Clone BS05695 Report

Search the DGRC for BS05695

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG3906-RA
Protein status:BS05695.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05695.3prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-02

> BS05695.3prime
ATGGTCTAGAAAGCTTTCACCACTGGAAGATGGTCAGCATGGCGCGTAGC
AGCTCTGGGATGTCCCAGCCGTTCTTGCGCAGGGTGCGCAGTGGCTTCAC
CACGTCGCGCTTGTTAATGTTGGCCTTGAGCGTGGCCTGGAATTGCTTGG
AGACCACCGCCTTGGTGAAGTTGCCGAAGTTGGTGTGATTCGCCTGGGAC
TGTGCCACATAGTTGTGCACCTCCTGCTTCGGCATGATGGAGAGCAGATC
GCCGACGAAGGTGTGGTGCTTCACGGCCTTGCAGTCGCAGTTGCGATCGG
GCTGGCGGACGGGCAGTATGATGCAATGGAAGATATCCGCCACGGTCTCA
ATGTCGGCGGTATCCACGCTCTCCGACTGCAGTTCCTTGAGAACGGTCTT
GTAGGCATCCGTATCCGTGAGCTGCTGGGTGGTCCTCTCGAATCCGGCTG
TGTTGTAGTACCGCATGGCGCGGCGGAACTTCAGATCACAATTGTAGTGC
ACCTCGATCAGATTGAGCAGGGCCTCCTGATTGATCATAGCGCGAATGTG
CTGGAAGTTGGCGCACAGGGCGGAGTCGTGATCGGTTCTATTCGGATTGT
TATTATCGGTATTGTTATTTTCTGGTGGACACCATTCCTCTGATTCCTCG
GACACCTCAATGTAATGTGGCTGTGCGATCGTGTGGCAGGCGAATATGGC
CACGGCCACGGTCAACAGTATCAACGTCTTCGCGTCCATGTCGACTGATA
ACT

BS05695.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-PA 723 CG3906-RA 1..723 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-RA 849 CG3906-RA 26..748 739..17 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23511577..23512200 116..739 3120 100 Plus
2R 25286936 2R 23511387..23511485 17..115 495 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:27:36 has no hits.

BS05695.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:26 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:55 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:29 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 18..748 17..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:02 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 18..748 17..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:02 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23511387..23511485 17..115 100 <- Plus
2R 23511577..23512205 116..746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:29 Download gff for BS05695.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19398910..19399008 17..115 100 <- Plus
arm_2R 19399100..19399728 116..746 99   Plus

BS05695.5prime Sequence

753 bp (735 high quality bases) assembled on 2005-12-02

> BS05695.5prime
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGTGAAAGCTTTCTAG
ACC

BS05695.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-PA 723 CG3906-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-RA 849 CG3906-RA 26..748 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23511577..23512200 640..17 3120 100 Minus
2R 25286936 2R 23511387..23511485 739..641 495 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:50:20 has no hits.

BS05695.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:27 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:56 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:38 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 18..748 10..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:35 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 18..748 10..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:35 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23511387..23511485 641..739 100 <- Minus
2R 23511577..23512205 10..640 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:38 Download gff for BS05695.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19398910..19399008 641..739 100 <- Minus
arm_2R 19399100..19399728 10..640 99   Minus

BS05695.complete Sequence

755 bp (755 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635224

> BS05695.complete
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGTGAAAGCTTTCTAG
ACCAT

BS05695.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-RA 723 CG3906-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-RA 849 CG3906-RA 26..748 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23511577..23512200 640..17 3120 100 Minus
2R 25286936 2R 23511387..23511485 739..641 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:06:10 has no hits.

BS05695.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:21 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:29 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 17..747 10..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:54:12 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 26..747 17..738 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:22 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 17..747 10..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:56 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
CG3906-RA 26..747 17..738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:56 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23511388..23511485 641..738 100 <- Minus
2R 23511577..23512200 17..640 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:54:12 Download gff for BS05695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19398911..19399008 641..738 100 <- Minus
arm_2R 19399100..19399723 17..640 100   Minus

BS05695.pep Sequence

Translation from 16 to 738

> BS05695.pep
MDAKTLILLTVAVAIFACHTIAQPHYIEVSEESEEWCPPENNNTDNNNPN
RTDHDSALCANFQHIRAMINQEALLNLIEVHYNCDLKFRRAMRYYNTAGF
ERTTQQLTDTDAYKTVLKELQSESVDTADIETVADIFHCIILPVRQPDRN
CDCKAVKHHTFVGDLLSIMPKQEVHNYVAQSQANHTNFGNFTKAVVSKQF
QATLKANINKRDVVKPLRTLRKNGWDIPELLRAMLTIFQW*

BS05695.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3906-PA 240 CG3906-PA 1..240 1..240 1275 100 Plus