Clone Sequence Records
BS05695.3prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-02
> BS05695.3prime
ATGGTCTAGAAAGCTTTCACCACTGGAAGATGGTCAGCATGGCGCGTAGC
AGCTCTGGGATGTCCCAGCCGTTCTTGCGCAGGGTGCGCAGTGGCTTCAC
CACGTCGCGCTTGTTAATGTTGGCCTTGAGCGTGGCCTGGAATTGCTTGG
AGACCACCGCCTTGGTGAAGTTGCCGAAGTTGGTGTGATTCGCCTGGGAC
TGTGCCACATAGTTGTGCACCTCCTGCTTCGGCATGATGGAGAGCAGATC
GCCGACGAAGGTGTGGTGCTTCACGGCCTTGCAGTCGCAGTTGCGATCGG
GCTGGCGGACGGGCAGTATGATGCAATGGAAGATATCCGCCACGGTCTCA
ATGTCGGCGGTATCCACGCTCTCCGACTGCAGTTCCTTGAGAACGGTCTT
GTAGGCATCCGTATCCGTGAGCTGCTGGGTGGTCCTCTCGAATCCGGCTG
TGTTGTAGTACCGCATGGCGCGGCGGAACTTCAGATCACAATTGTAGTGC
ACCTCGATCAGATTGAGCAGGGCCTCCTGATTGATCATAGCGCGAATGTG
CTGGAAGTTGGCGCACAGGGCGGAGTCGTGATCGGTTCTATTCGGATTGT
TATTATCGGTATTGTTATTTTCTGGTGGACACCATTCCTCTGATTCCTCG
GACACCTCAATGTAATGTGGCTGTGCGATCGTGTGGCAGGCGAATATGGC
CACGGCCACGGTCAACAGTATCAACGTCTTCGCGTCCATGTCGACTGATA
ACT
BS05695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-PA | 723 | CG3906-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-RA | 849 | CG3906-RA | 26..748 | 739..17 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23511577..23512200 | 116..739 | 3120 | 100 | Plus |
2R | 25286936 | 2R | 23511387..23511485 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:27:36 has no hits.
BS05695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:26 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:55 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:29 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 18..748 | 17..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:02 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 18..748 | 17..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:02 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23511387..23511485 | 17..115 | 100 | <- | Plus |
2R | 23511577..23512205 | 116..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:29 Download gff for
BS05695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19398910..19399008 | 17..115 | 100 | <- | Plus |
arm_2R | 19399100..19399728 | 116..746 | 99 | | Plus |
BS05695.5prime Sequence
753 bp (735 high quality bases) assembled on 2005-12-02
> BS05695.5prime
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGTGAAAGCTTTCTAG
ACC
BS05695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-PA | 723 | CG3906-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-RA | 849 | CG3906-RA | 26..748 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23511577..23512200 | 640..17 | 3120 | 100 | Minus |
2R | 25286936 | 2R | 23511387..23511485 | 739..641 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:50:20 has no hits.
BS05695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:27 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:56 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:38 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 18..748 | 10..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:35 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 18..748 | 10..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:35 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23511387..23511485 | 641..739 | 100 | <- | Minus |
2R | 23511577..23512205 | 10..640 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:38 Download gff for
BS05695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19398910..19399008 | 641..739 | 100 | <- | Minus |
arm_2R | 19399100..19399728 | 10..640 | 99 | | Minus |
BS05695.complete Sequence
755 bp (755 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635224
> BS05695.complete
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGTGAAAGCTTTCTAG
ACCAT
BS05695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-RA | 723 | CG3906-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-RA | 849 | CG3906-RA | 26..748 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23511577..23512200 | 640..17 | 3120 | 100 | Minus |
2R | 25286936 | 2R | 23511387..23511485 | 739..641 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:06:10 has no hits.
BS05695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:21 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:29 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 17..747 | 10..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:54:12 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 26..747 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:22 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 17..747 | 10..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:56 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3906-RA | 26..747 | 17..738 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:56 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23511388..23511485 | 641..738 | 100 | <- | Minus |
2R | 23511577..23512200 | 17..640 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:54:12 Download gff for
BS05695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19398911..19399008 | 641..738 | 100 | <- | Minus |
arm_2R | 19399100..19399723 | 17..640 | 100 | | Minus |
BS05695.pep Sequence
Translation from 16 to 738
> BS05695.pep
MDAKTLILLTVAVAIFACHTIAQPHYIEVSEESEEWCPPENNNTDNNNPN
RTDHDSALCANFQHIRAMINQEALLNLIEVHYNCDLKFRRAMRYYNTAGF
ERTTQQLTDTDAYKTVLKELQSESVDTADIETVADIFHCIILPVRQPDRN
CDCKAVKHHTFVGDLLSIMPKQEVHNYVAQSQANHTNFGNFTKAVVSKQF
QATLKANINKRDVVKPLRTLRKNGWDIPELLRAMLTIFQW*
BS05695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3906-PA | 240 | CG3906-PA | 1..240 | 1..240 | 1275 | 100 | Plus |