Clone Sequence Records
BS05696.3prime Sequence
630 bp (582 high quality bases) assembled on 2005-12-02
> BS05696.3prime
ATGGTCTAGAAAGCTTTTAGAACTGTATAAGATCACCTTCAAACGGCGCC
ACCACCTCCGTGGGCACGGGCACGGACAACTCCTCCGCCGGCTGGCCGTG
CAGCTGTAGCTGCTCCTGCATTTGCTGCTCCAGCGGCATGCCGAGGTCAA
TGTGATTGCCCATGGAGGATGACGCCCCGCTGCTGGGCTGGCGGCTCTGG
CTAACAATCTGTTCCTTTAGCTGGCGTATGAGCGCGTTTAGCTTCTCGCT
GGATGCGTGCTCGATGCACTGCACCCAGGCCAGGCGTTCGGCCGACGAAC
GTGTAATGAAACGTTCCGATGGGCTGTCCTTGAAGTCTAAATCGAATACG
TAGCCCTCGGAATCACGCTCCTCATTCTGAATGCGCGCACGACAGTTCTC
CAGCACCAGGAGGCCGGCCACCGCTGACTTGGGGTCCTTATCCTTGAGGT
AGAACAGTAAATTTCCACGCAGTTTACACCAACGTTCAACTCTGACTTCG
CTAGAGCGCCACAGGAAGCCCTCCTGGCGATCGGTGATGATGAGCAGGCC
CTCCTTGTCGAATCGCGTTGCTGGATTGCTGGCCAGGGAGTTCAGTTCCG
GCTTGTTAAAGCGCATGTCGACTGATAACT
BS05696.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33248-PA | 600 | CG33248-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42271-RB | 1352 | CG42271-RB | 313..913 | 617..17 | 3005 | 100 | Minus |
CG42271-RC | 4403 | CG42271-RC | 313..893 | 617..37 | 2905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14232721..14233042 | 17..338 | 1610 | 100 | Plus |
X | 23542271 | X | 14233105..14233265 | 337..497 | 805 | 100 | Plus |
X | 23542271 | X | 14233421..14233542 | 496..617 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:40:18 has no hits.
BS05696.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:28 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33248-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:57 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33248-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:11:26 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 309..913 | 17..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:54:15 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 309..913 | 17..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:54:15 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14232721..14233040 | 17..336 | 100 | <- | Plus |
X | 14233105..14233263 | 337..495 | 100 | <- | Plus |
X | 14233421..14233546 | 496..624 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:11:26 Download gff for
BS05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14127138..14127296 | 337..495 | 100 | <- | Plus |
arm_X | 14127454..14127579 | 496..624 | 97 | | Plus |
arm_X | 14126754..14127073 | 17..336 | 100 | <- | Plus |
BS05696.5prime Sequence
630 bp (629 high quality bases) assembled on 2005-12-02
> BS05696.5prime
GAAGTTATCAGTCGACATGCGCTTTAACAAGCCGGAACTGAACTCCCTGG
CCAGCAATCCAGCAACGCGATTCGACAAGGAGGGCCTGCTCATCATCACC
GATCGCCAGGAGGGCTTCCTGTGGCGCTCTAGCGAAGTCAGAGTTGAACG
TTGGTGTAAACTGCGTGGAAATTTACTGTTCTACCTCAAGGATAAGGACC
CCAAGTCAGCGGTGGCCGGCCTCCTGGTGCTGGAGAACTGTCGTGCGCGC
ATTCAGAATGAGGAGCGTGATTCCGAGGGCTACGTATTCGATTTAGACTT
CAAGGACAGCCCATCGGAACGTTTCATTACACGTTCGTCGGCCGAACGCC
TGGCCTGGGTGCAGTGCATCGAGCACGCATCCAGCGAGAAGCTAAACGCG
CTCATACGCCAGCTAAAGGAACAGATTGTTAGCCAGAGCCGCCAGCCCAG
CAGCGGGGCGTCATCCTCCATGGGCAATCACATTGACCTCGGCATGCCGC
TGGAGCAGCAAATGCAGGAGCAGCTACAGCTGCACGGCCAGCCGGCGGAG
GAGTTGTCCGTGCCCGTGCCCACGGAGGTGGTGGCGCCGTTTGAAGGTGA
TCTTATACAGTTCTAAAAGCTTTCTAGACC
BS05696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33248-PA | 600 | CG33248-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42271-RB | 1352 | CG42271-RB | 313..913 | 16..616 | 3005 | 100 | Plus |
CG42271-RC | 4403 | CG42271-RC | 313..893 | 16..596 | 2905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14232721..14233042 | 616..295 | 1610 | 100 | Minus |
X | 23542271 | X | 14233105..14233265 | 296..136 | 805 | 100 | Minus |
X | 23542271 | X | 14233421..14233542 | 137..16 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:01 has no hits.
BS05696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:29 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33248-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:59 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33248-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:33 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 309..913 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:04 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 309..913 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:04 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14232721..14233040 | 297..616 | 100 | <- | Minus |
X | 14233105..14233263 | 138..296 | 100 | <- | Minus |
X | 14233421..14233546 | 9..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:33 Download gff for
BS05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14126754..14127073 | 297..616 | 100 | <- | Minus |
arm_X | 14127138..14127296 | 138..296 | 100 | <- | Minus |
arm_X | 14127454..14127579 | 9..137 | 97 | | Minus |
BS05696.complete Sequence
632 bp (632 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ635225
> BS05696.complete
GAAGTTATCAGTCGACATGCGCTTTAACAAGCCGGAACTGAACTCCCTGG
CCAGCAATCCAGCAACGCGATTCGACAAGGAGGGCCTGCTCATCATCACC
GATCGCCAGGAGGGCTTCCTGTGGCGCTCTAGCGAAGTCAGAGTTGAACG
TTGGTGTAAACTGCGTGGAAATTTACTGTTCTACCTCAAGGATAAGGACC
CCAAGTCAGCGGTGGCCGGCCTCCTGGTGCTGGAGAACTGTCGTGCGCGC
ATTCAGAATGAGGAGCGTGATTCCGAGGGCTACGTATTCGATTTAGACTT
CAAGGACAGCCCATCGGAACGTTTCATTACACGTTCGTCGGCCGAACGCC
TGGCCTGGGTGCAGTGCATCGAGCACGCATCCAGCGAGAAGCTAAACGCG
CTCATACGCCAGCTAAAGGAACAGATTGTTAGCCAGAGCCGCCAGCCCAG
CAGCGGGGCGTCATCCTCCATGGGCAATCACATTGACCTCGGCATGCCGC
TGGAGCAGCAAATGCAGGAGCAGCTACAGCTGCACGGCCAGCCGGCGGAG
GAGTTGTCCGTGCCCGTGCCCACGGAGGTGGTGGCGCCGTTTGAAGGTGA
TCTTATACAGTTCTAAAAGCTTTCTAGACCAT
BS05696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42271-RB | 600 | CG42271-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
CG42271-RC | 3843 | CG42271-PC | 1..580 | 17..596 | 2900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42271-RB | 1352 | CG42271-RB | 313..913 | 16..616 | 3005 | 100 | Plus |
CG42271-RC | 4403 | CG42271-RC | 313..893 | 16..596 | 2905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14232721..14233042 | 616..295 | 1610 | 100 | Minus |
X | 23542271 | X | 14233105..14233265 | 296..136 | 805 | 100 | Minus |
X | 23542271 | X | 14233421..14233542 | 137..16 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:00:22 has no hits.
BS05696.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:13 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:50 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 295..899 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:30 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 314..911 | 17..614 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:13 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 295..899 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:03 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42271-RB | 314..911 | 17..614 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:03 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14233421..14233541 | 17..137 | 100 | | Minus |
X | 14232723..14233040 | 297..614 | 100 | <- | Minus |
X | 14233105..14233263 | 138..296 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:30 Download gff for
BS05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14127454..14127574 | 17..137 | 100 | | Minus |
arm_X | 14126756..14127073 | 297..614 | 100 | <- | Minus |
arm_X | 14127138..14127296 | 138..296 | 100 | <- | Minus |
BS05696.pep Sequence
Translation from 16 to 615
> BS05696.pep
MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR
GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS
ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS
SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*
BS05696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42271-PB | 199 | CG33248-PA | 1..199 | 1..199 | 1020 | 100 | Plus |
CG42271-PC | 1280 | CG42271-PC | 1..193 | 1..193 | 989 | 100 | Plus |