Clone BS05696 Report

Search the DGRC for BS05696

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG42271-RB
Protein status:BS05696.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05696.3prime Sequence

630 bp (582 high quality bases) assembled on 2005-12-02

> BS05696.3prime
ATGGTCTAGAAAGCTTTTAGAACTGTATAAGATCACCTTCAAACGGCGCC
ACCACCTCCGTGGGCACGGGCACGGACAACTCCTCCGCCGGCTGGCCGTG
CAGCTGTAGCTGCTCCTGCATTTGCTGCTCCAGCGGCATGCCGAGGTCAA
TGTGATTGCCCATGGAGGATGACGCCCCGCTGCTGGGCTGGCGGCTCTGG
CTAACAATCTGTTCCTTTAGCTGGCGTATGAGCGCGTTTAGCTTCTCGCT
GGATGCGTGCTCGATGCACTGCACCCAGGCCAGGCGTTCGGCCGACGAAC
GTGTAATGAAACGTTCCGATGGGCTGTCCTTGAAGTCTAAATCGAATACG
TAGCCCTCGGAATCACGCTCCTCATTCTGAATGCGCGCACGACAGTTCTC
CAGCACCAGGAGGCCGGCCACCGCTGACTTGGGGTCCTTATCCTTGAGGT
AGAACAGTAAATTTCCACGCAGTTTACACCAACGTTCAACTCTGACTTCG
CTAGAGCGCCACAGGAAGCCCTCCTGGCGATCGGTGATGATGAGCAGGCC
CTCCTTGTCGAATCGCGTTGCTGGATTGCTGGCCAGGGAGTTCAGTTCCG
GCTTGTTAAAGCGCATGTCGACTGATAACT

BS05696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33248-PA 600 CG33248-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-RB 1352 CG42271-RB 313..913 617..17 3005 100 Minus
CG42271-RC 4403 CG42271-RC 313..893 617..37 2905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14232721..14233042 17..338 1610 100 Plus
X 23542271 X 14233105..14233265 337..497 805 100 Plus
X 23542271 X 14233421..14233542 496..617 610 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:40:18 has no hits.

BS05696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:28 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33248-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:57 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33248-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:11:26 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 309..913 17..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:54:15 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 309..913 17..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:54:15 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14232721..14233040 17..336 100 <- Plus
X 14233105..14233263 337..495 100 <- Plus
X 14233421..14233546 496..624 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:11:26 Download gff for BS05696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14127138..14127296 337..495 100 <- Plus
arm_X 14127454..14127579 496..624 97   Plus
arm_X 14126754..14127073 17..336 100 <- Plus

BS05696.5prime Sequence

630 bp (629 high quality bases) assembled on 2005-12-02

> BS05696.5prime
GAAGTTATCAGTCGACATGCGCTTTAACAAGCCGGAACTGAACTCCCTGG
CCAGCAATCCAGCAACGCGATTCGACAAGGAGGGCCTGCTCATCATCACC
GATCGCCAGGAGGGCTTCCTGTGGCGCTCTAGCGAAGTCAGAGTTGAACG
TTGGTGTAAACTGCGTGGAAATTTACTGTTCTACCTCAAGGATAAGGACC
CCAAGTCAGCGGTGGCCGGCCTCCTGGTGCTGGAGAACTGTCGTGCGCGC
ATTCAGAATGAGGAGCGTGATTCCGAGGGCTACGTATTCGATTTAGACTT
CAAGGACAGCCCATCGGAACGTTTCATTACACGTTCGTCGGCCGAACGCC
TGGCCTGGGTGCAGTGCATCGAGCACGCATCCAGCGAGAAGCTAAACGCG
CTCATACGCCAGCTAAAGGAACAGATTGTTAGCCAGAGCCGCCAGCCCAG
CAGCGGGGCGTCATCCTCCATGGGCAATCACATTGACCTCGGCATGCCGC
TGGAGCAGCAAATGCAGGAGCAGCTACAGCTGCACGGCCAGCCGGCGGAG
GAGTTGTCCGTGCCCGTGCCCACGGAGGTGGTGGCGCCGTTTGAAGGTGA
TCTTATACAGTTCTAAAAGCTTTCTAGACC

BS05696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33248-PA 600 CG33248-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-RB 1352 CG42271-RB 313..913 16..616 3005 100 Plus
CG42271-RC 4403 CG42271-RC 313..893 16..596 2905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14232721..14233042 616..295 1610 100 Minus
X 23542271 X 14233105..14233265 296..136 805 100 Minus
X 23542271 X 14233421..14233542 137..16 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:01 has no hits.

BS05696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:29 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33248-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:50:59 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33248-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:33 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 309..913 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:04 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 309..913 9..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:04 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14232721..14233040 297..616 100 <- Minus
X 14233105..14233263 138..296 100 <- Minus
X 14233421..14233546 9..137 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:33 Download gff for BS05696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14126754..14127073 297..616 100 <- Minus
arm_X 14127138..14127296 138..296 100 <- Minus
arm_X 14127454..14127579 9..137 97   Minus

BS05696.complete Sequence

632 bp (632 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ635225

> BS05696.complete
GAAGTTATCAGTCGACATGCGCTTTAACAAGCCGGAACTGAACTCCCTGG
CCAGCAATCCAGCAACGCGATTCGACAAGGAGGGCCTGCTCATCATCACC
GATCGCCAGGAGGGCTTCCTGTGGCGCTCTAGCGAAGTCAGAGTTGAACG
TTGGTGTAAACTGCGTGGAAATTTACTGTTCTACCTCAAGGATAAGGACC
CCAAGTCAGCGGTGGCCGGCCTCCTGGTGCTGGAGAACTGTCGTGCGCGC
ATTCAGAATGAGGAGCGTGATTCCGAGGGCTACGTATTCGATTTAGACTT
CAAGGACAGCCCATCGGAACGTTTCATTACACGTTCGTCGGCCGAACGCC
TGGCCTGGGTGCAGTGCATCGAGCACGCATCCAGCGAGAAGCTAAACGCG
CTCATACGCCAGCTAAAGGAACAGATTGTTAGCCAGAGCCGCCAGCCCAG
CAGCGGGGCGTCATCCTCCATGGGCAATCACATTGACCTCGGCATGCCGC
TGGAGCAGCAAATGCAGGAGCAGCTACAGCTGCACGGCCAGCCGGCGGAG
GAGTTGTCCGTGCCCGTGCCCACGGAGGTGGTGGCGCCGTTTGAAGGTGA
TCTTATACAGTTCTAAAAGCTTTCTAGACCAT

BS05696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-RB 600 CG42271-PB 1..600 17..616 3000 100 Plus
CG42271-RC 3843 CG42271-PC 1..580 17..596 2900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-RB 1352 CG42271-RB 313..913 16..616 3005 100 Plus
CG42271-RC 4403 CG42271-RC 313..893 16..596 2905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14232721..14233042 616..295 1610 100 Minus
X 23542271 X 14233105..14233265 296..136 805 100 Minus
X 23542271 X 14233421..14233542 137..16 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:00:22 has no hits.

BS05696.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:13 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:50 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 295..899 9..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:30 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 314..911 17..614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:13 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 295..899 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:03 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
CG42271-RB 314..911 17..614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:03 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
X 14233421..14233541 17..137 100   Minus
X 14232723..14233040 297..614 100 <- Minus
X 14233105..14233263 138..296 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:30 Download gff for BS05696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14127454..14127574 17..137 100   Minus
arm_X 14126756..14127073 297..614 100 <- Minus
arm_X 14127138..14127296 138..296 100 <- Minus

BS05696.pep Sequence

Translation from 16 to 615

> BS05696.pep
MRFNKPELNSLASNPATRFDKEGLLIITDRQEGFLWRSSEVRVERWCKLR
GNLLFYLKDKDPKSAVAGLLVLENCRARIQNEERDSEGYVFDLDFKDSPS
ERFITRSSAERLAWVQCIEHASSEKLNALIRQLKEQIVSQSRQPSSGASS
SMGNHIDLGMPLEQQMQEQLQLHGQPAEELSVPVPTEVVAPFEGDLIQF*

BS05696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42271-PB 199 CG33248-PA 1..199 1..199 1020 100 Plus
CG42271-PC 1280 CG42271-PC 1..193 1..193 989 100 Plus