Clone BS05705 Report

Search the DGRC for BS05705

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptTrxr-1-RA
Protein status:BS05705.pep: full length peptide match
Sequenced Size:1508

Clone Sequence Records

BS05705.3prime Sequence

756 bp (755 high quality bases) assembled on 2005-12-03

> BS05705.3prime
ATGGTCTAGAAAGCTTTTAGCTGCAGCAGCTGGCCGGCGTGGGGTCCAGT
CCGGAGCGCTTGGTGATGGCCAGCCGGGTGAATTCTTCGGCGGTAGTGGG
ATGGATGCCCACGGTGTTGATCAGCGTGTTAATAGTCAGGCCAGACTTCA
AAGCGGCAGCGAATCCCTGGATAACCTCACCGGCCACCGGGCCAATATAG
TGCAGTCCATAGACGCGCTGGTCACCATGGCGCTCGGCCACAGCCTTCAA
GTAGCAGTAGCGCACGCTCTTCTGGGGAATGAAGAACTCCGTGGGCTTGT
AGTAGCCGTGGAACACCTCGATCTCATCGGCTCCGAACTGCTTGACGGCA
TCCTCCTCGCTCAGGCCGACGCAGGCGTACTCCAGGGGCGTGAAAACGGT
GGTGGCCACATCCTTGTAGTCCATGCGCTGGGTAGATCCTCCGTACAGGC
GGCGGGCCAGCAAACGGCCAGCCAAAACGGCGACGGGCGTCAGCTCTGGC
TTGCCATAGATGATATCGCCGACAGCGTAGATGTTTGCCACATTGGTAGC
CTCCTGGGAGTCCACTGGAATCTTGTCCTTCTGCACAGTCACGCCGGCAT
TGGGCAGGTTCAGATCGTCCACCAGACCCTTGCGGCCGATGGCCCACAGA
ACGGTGTCGTAAACATCCTCGGCCTCCTCGCCGGTCTCCACGTTCTTGTA
CTTCACGAGCAGCTTGCCATCATCCTGCTTTTCCACGGACAGCGGCACCG
TCTTGC

BS05705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 737..1476 756..17 3700 100 Minus
CG2151-PB 1791 Trxr-1-RB 1052..1791 756..17 3700 100 Minus
CG2151-PC 1527 Trxr-1-RC 788..1527 756..17 3700 100 Minus
CG11401-PA 1551 Trxr-2-RA 1246..1307 322..261 235 95.1 Minus
CG11401-PA 1551 Trxr-2-RA 1450..1511 118..57 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RC 2108 CG2151-RC 1030..1770 756..16 3705 100 Minus
Trxr-1-RB 2277 CG2151-RB 1199..1939 756..16 3705 100 Minus
Trxr-1-RA 2003 CG2151-RA 925..1665 756..16 3705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246955..8247695 756..16 3705 100 Minus
3L 28110227 3L 22551224..22551867 664..21 640 73.3 Minus
Blast to na_te.dros performed on 2015-02-10 19:09:50 has no hits.

BS05705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:40 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 788..1527 17..756 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:10 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 788..1527 17..756 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:46 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 925..1667 13..756 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:50 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 925..1667 13..756 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:50 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8246955..8247697 13..756 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:46 Download gff for BS05705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8140988..8141730 13..756 99   Minus

BS05705.5prime Sequence

831 bp (727 high quality bases) assembled on 2005-12-03

> BS05705.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCCTTCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGC
TCGTGAAAGTACAGAACGTGGAGACCGGCGA

BS05705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 1..791 17..807 3905 99.7 Plus
CG2151-PB 1791 Trxr-1-RB 330..1106 31..807 3835 99.7 Plus
CG2151-PC 1527 Trxr-1-RC 67..842 32..807 3830 99.7 Plus
CG32715-PA 183 CG32715-RA 1..183 253..71 915 100 Minus
CG11401-PA 1551 Trxr-2-RA 206..326 156..276 330 90.9 Plus
CG11401-PA 1551 Trxr-2-RA 373..444 320..391 235 93 Plus
CG11401-PA 1551 Trxr-2-RA 688..752 629..693 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2003 CG2151-RA 189..1003 17..831 4000 99.5 Plus
Trxr-1-RB 2277 CG2151-RB 477..1277 31..831 3930 99.5 Plus
Trxr-1-RC 2108 CG2151-RC 309..1108 32..831 3925 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246092..8246446 31..385 1760 99.7 Plus
X 23542271 X 8246510..8246736 379..605 1135 100 Plus
X 23542271 X 8246808..8247033 606..831 1025 96.9 Plus
3L 28110227 3L 22550410..22550764 37..391 715 81.3 Plus
3L 28110227 3L 22550864..22551124 485..745 465 78.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:58:48 has no hits.

BS05705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:19:41 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:12 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:16 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1002 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:45 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1002 17..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:45 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8242716..8242731 17..32 100 -> Plus
X 8246094..8246439 33..378 100 -> Plus
X 8246510..8246736 379..605 100 -> Plus
X 8246808..8247032 606..830 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:16 Download gff for BS05705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136749..8136764 17..32 100 -> Plus
arm_X 8140127..8140472 33..378 100 -> Plus
arm_X 8140543..8140769 379..605 100 -> Plus
arm_X 8140841..8141065 606..830 98   Plus

BS05705.complete Sequence

1508 bp assembled on 2008-08-14

GenBank Submission: FJ635226

> BS05705.complete
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGC
TCGTGAAGTACAAGAACGTGGAGACCGGCGAGGAGGCCGAGGATGTTTAC
GACACCGTTCTGTGGGCCATCGGCCGCAAGGGTCTGGTGGACGATCTGAA
CCTGCCCAATGCCGGCGTGACTGTGCAGAAGGACAAGATTCCAGTGGACT
CCCAGGAGGCTACCAATGTGGCAAACATCTACGCTGTCGGCGATATCATC
TATGGCAAGCCAGAGCTGACGCCCGTCGCCGTTTTGGCTGGCCGTTTGCT
GGCCCGCCGCCTGTACGGAGGATCTACCCAGCGCATGGACTACAAGGATG
TGGCCACCACCGTTTTCACGCCCCTGGAGTACGCCTGCGTCGGCCTGAGC
GAGGAGGATGCCGTCAAGCAGTTCGGAGCCGATGAGATCGAGGTGTTCCA
CGGCTACTACAAGCCCACGGAGTTCTTCATTCCCCAGAAGAGCGTGCGCT
ACTGCTACTTGAAGGCTGTGGCCGAGCGCCATGGTGACCAGCGCGTCTAT
GGACTGCACTATATTGGCCCGGTGGCCGGTGAGGTTATCCAGGGATTCGC
TGCCGCTTTGAAGTCTGGCCTGACTATTAACACGCTGATCAACACCGTGG
GCATCCATCCCACTACCGCCGAAGAATTCACCCGGCTGGCCATCACCAAG
CGCTCCGGACTGGACCCCACGCCGGCCAGCTGCTGCAGCTAAAAGCTTTC
TAGACCAT

BS05705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 1476 CG2151-PA 1..1476 17..1492 7380 100 Plus
Trxr-1-RB 1791 CG2151-PB 330..1791 31..1492 7310 100 Plus
Trxr-1-RC 1527 CG2151-PC 67..1527 32..1492 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2003 CG2151-RA 189..1665 17..1493 7385 100 Plus
Trxr-1-RB 2277 CG2151-RB 477..1939 31..1493 7315 100 Plus
Trxr-1-RC 2108 CG2151-RC 309..1770 32..1493 7310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246808..8247695 606..1493 4440 100 Plus
X 23542271 X 8246092..8246446 31..385 1760 99.7 Plus
X 23542271 X 8246510..8246736 379..605 1135 100 Plus
3L 28110227 3L 22550864..22551867 485..1488 955 73 Plus
3L 28110227 3L 22550410..22550764 37..391 715 81.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:13:24 has no hits.

BS05705.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:24 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 233..1711 17..1496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:55 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1662 17..1490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:50 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 233..1706 17..1490 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:34 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1662 17..1490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:34 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
X 8242716..8242731 17..32 100 -> Plus
X 8246094..8246439 33..378 100 -> Plus
X 8246510..8246736 379..605 100 -> Plus
X 8246808..8247692 606..1490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:55 Download gff for BS05705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136749..8136764 17..32 100 -> Plus
arm_X 8140543..8140769 379..605 100 -> Plus
arm_X 8140127..8140472 33..378 100 -> Plus
arm_X 8140841..8141725 606..1490 100   Plus

BS05705.pep Sequence

Translation from 16 to 1491

> BS05705.pep
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK
WGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLV
QSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTIT
AQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGL
ECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP
LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAG
VTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY
GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP
TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS
GLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCS*

BS05705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PA 491 CG2151-PA 1..491 1..491 2556 100 Plus
Trxr-1-PB 596 CG2151-PB 106..596 1..491 2532 99.2 Plus
Trxr-1-PC 508 CG2151-PC 23..508 6..491 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 24..516 1..491 1980 75.9 Plus
CG7430-PB 504 CG7430-PB 35..487 7..469 389 28.1 Plus