Clone Sequence Records
BS05718.3prime Sequence
753 bp (718 high quality bases) assembled on 2005-12-03
> BS05718.3prime
ATGGTCTAGAAAGCTTCTACACATCGTACAATTTCATGTTCTCGATCTCG
TCCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAG
GCACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGG
CGAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAA
ATGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTT
GCGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTG
ATATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGC
GAATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGAT
CATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCG
ATACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGA
AACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCAC
TTCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTA
GATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGC
ATAACACAGCGCANACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAG
GACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAGAA
AGC
BS05718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PC | 1128 | CG33156-RC | 392..1128 | 753..17 | 3666 | 99.8 | Minus |
CG33156-PA | 1365 | CG33156-RA | 629..1365 | 753..17 | 3666 | 99.8 | Minus |
CG33156-PE | 1473 | CG33156-RE | 737..1473 | 753..17 | 3666 | 99.8 | Minus |
CG33156-PB | 1362 | CG33156-RB | 626..1362 | 753..17 | 3666 | 99.8 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 481..299 | 465 | 90.1 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 481..299 | 465 | 90.1 | Minus |
CG6145-PB | 1263 | CG6145-RB | 799..981 | 481..299 | 465 | 90.1 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 149..84 | 155 | 89.3 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 149..84 | 155 | 89.3 | Minus |
CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 149..84 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RF | 1795 | CG33156-RF | 696..1432 | 753..17 | 3674 | 99.9 | Minus |
CG33156-RB | 1824 | CG33156-RB | 725..1461 | 753..17 | 3674 | 99.9 | Minus |
CG33156-RE | 2330 | CG33156-RE | 1231..1967 | 753..17 | 3674 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549402 | 305..753 | 2234 | 99.8 | Plus |
2R | 25286936 | 2R | 13548607..13548896 | 17..306 | 1450 | 100 | Plus |
2R | 25286936 | 2R | 13538198..13538468 | 305..575 | 770 | 85.6 | Plus |
2R | 25286936 | 2R | 13537799..13538051 | 54..306 | 545 | 81 | Plus |
2R | 25286936 | 2R | 13538625..13538719 | 657..751 | 224 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:08:53 has no hits.
BS05718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:09 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 737..1473 | 17..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:47 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 737..1473 | 17..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:48 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1231..1970 | 13..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:37 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1231..1970 | 13..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:37 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13548604..13548894 | 13..304 | 99 | <- | Plus |
2R | 13548954..13549402 | 305..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:48 Download gff for
BS05718.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436109..9436399 | 13..304 | 99 | <- | Plus |
arm_2R | 9436459..9436907 | 305..753 | 99 | | Plus |
BS05718.5prime Sequence
695 bp (673 high quality bases) assembled on 2005-12-03
> BS05718.5prime
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCC
BS05718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PB | 1362 | CG33156-RB | 1..679 | 17..695 | 3395 | 100 | Plus |
CG33156-PA | 1365 | CG33156-RA | 176..682 | 189..695 | 2535 | 100 | Plus |
CG33156-PE | 1473 | CG33156-RE | 285..790 | 190..695 | 2530 | 100 | Plus |
CG33156-PC | 1128 | CG33156-RC | 1..445 | 251..695 | 2225 | 100 | Plus |
CG6145-PA | 1563 | CG6145-RA | 272..392 | 222..342 | 330 | 90.9 | Plus |
CG6145-PC | 1647 | CG6145-RC | 356..476 | 222..342 | 330 | 90.9 | Plus |
CG6145-PB | 1263 | CG6145-RB | 1..92 | 251..342 | 260 | 91.3 | Plus |
CG6145-PA | 1563 | CG6145-RA | 601..689 | 491..579 | 195 | 88.7 | Plus |
CG6145-PC | 1647 | CG6145-RC | 685..773 | 491..579 | 195 | 88.7 | Plus |
CG6145-PB | 1263 | CG6145-RB | 301..389 | 491..579 | 195 | 88.7 | Plus |
CG6145-PA | 1563 | CG6145-RA | 430..485 | 383..438 | 155 | 91 | Plus |
CG6145-PC | 1647 | CG6145-RC | 514..569 | 383..438 | 155 | 91 | Plus |
CG6145-PB | 1263 | CG6145-RB | 130..185 | 383..438 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1824 | CG33156-RB | 100..778 | 17..695 | 3395 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 242..749 | 188..695 | 2540 | 100 | Plus |
CG33156-RA | 1874 | CG33156-RA | 322..828 | 189..695 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13549599..13549918 | 507..188 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 13549349..13549536 | 695..508 | 940 | 100 | Minus |
2R | 25286936 | 2R | 13549986..13550159 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 13539104..13539359 | 438..180 | 600 | 83 | Minus |
2R | 25286936 | 2R | 13538674..13538855 | 689..508 | 445 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:58:23 has no hits.
BS05718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:10 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PB | 1..679 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:49 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PB | 1..679 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:08 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 100..778 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:40 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 100..778 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:40 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549349..13549536 | 508..695 | 100 | <- | Minus |
2R | 13549599..13549916 | 190..507 | 100 | <- | Minus |
2R | 13549987..13550159 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:08 Download gff for
BS05718.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436854..9437041 | 508..695 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 190..507 | 100 | <- | Minus |
arm_2R | 9437492..9437664 | 17..189 | 100 | | Minus |
BS05718.complete Sequence
1394 bp (1394 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635227
> BS05718.complete
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTC
ATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGA
CGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACGC
CCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCAT
CCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTAG
CTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTAT
CCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAGG
CAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATCC
CGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCCC
TAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGAC
GAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGAT
CGAGAACATGAAATTGTACGATGTGTAGAAGCTTTCTAGACCAT
BS05718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1362 | CG33156-PB | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG33156-RF | 1353 | CG33156-PF | 163..1353 | 188..1378 | 5955 | 100 | Plus |
CG33156-RA | 1365 | CG33156-PA | 176..1365 | 189..1378 | 5950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1824 | CG33156-RB | 100..1461 | 17..1378 | 6810 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 242..1432 | 188..1378 | 5955 | 100 | Plus |
CG33156-RA | 1874 | CG33156-RA | 322..1511 | 189..1378 | 5950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549536 | 1090..508 | 2915 | 100 | Minus |
2R | 25286936 | 2R | 13549599..13549918 | 507..188 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 13548607..13548896 | 1378..1089 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 13549986..13550159 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 13538198..13538468 | 1090..820 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13539104..13539359 | 438..180 | 600 | 83 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 738..508 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13537799..13538051 | 1341..1089 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:41:03 has no hits.
BS05718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:27 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 1..1362 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:28 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 117..1481 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:14 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 106..1461 | 23..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:28 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 117..1481 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:14 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 106..1461 | 23..1378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:14 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549599..13549916 | 190..507 | 100 | <- | Minus |
2R | 13549987..13550153 | 23..189 | 100 | | Minus |
2R | 13548607..13548894 | 1091..1378 | 100 | <- | Minus |
2R | 13548954..13549536 | 508..1090 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:14 Download gff for
BS05718.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436112..9436399 | 1091..1378 | 100 | <- | Minus |
arm_2R | 9436459..9437041 | 508..1090 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 190..507 | 100 | <- | Minus |
arm_2R | 9437492..9437658 | 23..189 | 100 | | Minus |
BS05718.pep Sequence
Translation from 16 to 1377
> BS05718.pep
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDV*
BS05718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PB | 453 | CG33156-PB | 1..453 | 1..453 | 2358 | 100 | Plus |
CG33156-PF | 450 | CG33156-PF | 11..450 | 10..453 | 2052 | 90.5 | Plus |
CG33156-PA | 454 | CG33156-PA | 60..454 | 59..453 | 2041 | 100 | Plus |
CG33156-PE | 490 | CG33156-PE | 96..490 | 59..453 | 2041 | 100 | Plus |
CG33156-PC | 375 | CG33156-PC | 1..375 | 79..453 | 1933 | 100 | Plus |