Clone BS05718 Report

Search the DGRC for BS05718

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG33156-RB
Protein status:BS05718.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05718.3prime Sequence

753 bp (718 high quality bases) assembled on 2005-12-03

> BS05718.3prime
ATGGTCTAGAAAGCTTCTACACATCGTACAATTTCATGTTCTCGATCTCG
TCCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAG
GCACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGG
CGAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAA
ATGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTT
GCGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTG
ATATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGC
GAATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGAT
CATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCG
ATACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGA
AACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCAC
TTCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTA
GATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGC
ATAACACAGCGCANACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAG
GACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAGAA
AGC

BS05718.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PC 1128 CG33156-RC 392..1128 753..17 3666 99.8 Minus
CG33156-PA 1365 CG33156-RA 629..1365 753..17 3666 99.8 Minus
CG33156-PE 1473 CG33156-RE 737..1473 753..17 3666 99.8 Minus
CG33156-PB 1362 CG33156-RB 626..1362 753..17 3666 99.8 Minus
CG6145-PA 1563 CG6145-RA 1099..1281 481..299 465 90.1 Minus
CG6145-PC 1647 CG6145-RC 1183..1365 481..299 465 90.1 Minus
CG6145-PB 1263 CG6145-RB 799..981 481..299 465 90.1 Minus
CG6145-PA 1563 CG6145-RA 1431..1496 149..84 155 89.3 Minus
CG6145-PC 1647 CG6145-RC 1515..1580 149..84 155 89.3 Minus
CG6145-PB 1263 CG6145-RB 1131..1196 149..84 155 89.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RF 1795 CG33156-RF 696..1432 753..17 3674 99.9 Minus
CG33156-RB 1824 CG33156-RB 725..1461 753..17 3674 99.9 Minus
CG33156-RE 2330 CG33156-RE 1231..1967 753..17 3674 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548954..13549402 305..753 2234 99.8 Plus
2R 25286936 2R 13548607..13548896 17..306 1450 100 Plus
2R 25286936 2R 13538198..13538468 305..575 770 85.6 Plus
2R 25286936 2R 13537799..13538051 54..306 545 81 Plus
2R 25286936 2R 13538625..13538719 657..751 224 82.1 Plus
Blast to na_te.dros performed on 2015-02-11 11:08:53 has no hits.

BS05718.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:09 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PE 737..1473 17..753 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:47 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PE 737..1473 17..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:48 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 1231..1970 13..753 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:37 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 1231..1970 13..753 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:37 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13548604..13548894 13..304 99 <- Plus
2R 13548954..13549402 305..753 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:48 Download gff for BS05718.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436109..9436399 13..304 99 <- Plus
arm_2R 9436459..9436907 305..753 99   Plus

BS05718.5prime Sequence

695 bp (673 high quality bases) assembled on 2005-12-03

> BS05718.5prime
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCC

BS05718.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 1362 CG33156-RB 1..679 17..695 3395 100 Plus
CG33156-PA 1365 CG33156-RA 176..682 189..695 2535 100 Plus
CG33156-PE 1473 CG33156-RE 285..790 190..695 2530 100 Plus
CG33156-PC 1128 CG33156-RC 1..445 251..695 2225 100 Plus
CG6145-PA 1563 CG6145-RA 272..392 222..342 330 90.9 Plus
CG6145-PC 1647 CG6145-RC 356..476 222..342 330 90.9 Plus
CG6145-PB 1263 CG6145-RB 1..92 251..342 260 91.3 Plus
CG6145-PA 1563 CG6145-RA 601..689 491..579 195 88.7 Plus
CG6145-PC 1647 CG6145-RC 685..773 491..579 195 88.7 Plus
CG6145-PB 1263 CG6145-RB 301..389 491..579 195 88.7 Plus
CG6145-PA 1563 CG6145-RA 430..485 383..438 155 91 Plus
CG6145-PC 1647 CG6145-RC 514..569 383..438 155 91 Plus
CG6145-PB 1263 CG6145-RB 130..185 383..438 155 91 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1824 CG33156-RB 100..778 17..695 3395 100 Plus
CG33156-RF 1795 CG33156-RF 242..749 188..695 2540 100 Plus
CG33156-RA 1874 CG33156-RA 322..828 189..695 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13549599..13549918 507..188 1600 100 Minus
2R 25286936 2R 13549349..13549536 695..508 940 100 Minus
2R 25286936 2R 13549986..13550159 190..17 870 100 Minus
2R 25286936 2R 13539104..13539359 438..180 600 83 Minus
2R 25286936 2R 13538674..13538855 689..508 445 83 Minus
Blast to na_te.dros performed on 2015-02-12 04:58:23 has no hits.

BS05718.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:10 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PB 1..679 17..695 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:49 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PB 1..679 17..695 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:13:08 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 100..778 17..695 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:40 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 100..778 17..695 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:40 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13549349..13549536 508..695 100 <- Minus
2R 13549599..13549916 190..507 100 <- Minus
2R 13549987..13550159 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:13:08 Download gff for BS05718.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436854..9437041 508..695 100 <- Minus
arm_2R 9437104..9437421 190..507 100 <- Minus
arm_2R 9437492..9437664 17..189 100   Minus

BS05718.complete Sequence

1394 bp (1394 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635227

> BS05718.complete
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTC
ATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGA
CGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACGC
CCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCAT
CCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTAG
CTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTAT
CCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAGG
CAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATCC
CGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCCC
TAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGAC
GAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGAT
CGAGAACATGAAATTGTACGATGTGTAGAAGCTTTCTAGACCAT

BS05718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1362 CG33156-PB 1..1362 17..1378 6810 100 Plus
CG33156-RF 1353 CG33156-PF 163..1353 188..1378 5955 100 Plus
CG33156-RA 1365 CG33156-PA 176..1365 189..1378 5950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1824 CG33156-RB 100..1461 17..1378 6810 100 Plus
CG33156-RF 1795 CG33156-RF 242..1432 188..1378 5955 100 Plus
CG33156-RA 1874 CG33156-RA 322..1511 189..1378 5950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548954..13549536 1090..508 2915 100 Minus
2R 25286936 2R 13549599..13549918 507..188 1600 100 Minus
2R 25286936 2R 13548607..13548896 1378..1089 1450 100 Minus
2R 25286936 2R 13549986..13550159 190..17 870 100 Minus
2R 25286936 2R 13538198..13538468 1090..820 770 85.6 Minus
2R 25286936 2R 13539104..13539359 438..180 600 83 Minus
2R 25286936 2R 13538625..13538855 738..508 585 83.5 Minus
2R 25286936 2R 13537799..13538051 1341..1089 545 81 Minus
Blast to na_te.dros performed on 2014-11-27 16:41:03 has no hits.

BS05718.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:27 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:28 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 117..1481 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:14 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 106..1461 23..1378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:28 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 117..1481 17..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:14 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 106..1461 23..1378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:14 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13549599..13549916 190..507 100 <- Minus
2R 13549987..13550153 23..189 100   Minus
2R 13548607..13548894 1091..1378 100 <- Minus
2R 13548954..13549536 508..1090 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:14 Download gff for BS05718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436112..9436399 1091..1378 100 <- Minus
arm_2R 9436459..9437041 508..1090 100 <- Minus
arm_2R 9437104..9437421 190..507 100 <- Minus
arm_2R 9437492..9437658 23..189 100   Minus

BS05718.pep Sequence

Translation from 16 to 1377

> BS05718.pep
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDV*

BS05718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 453 CG33156-PB 1..453 1..453 2358 100 Plus
CG33156-PF 450 CG33156-PF 11..450 10..453 2052 90.5 Plus
CG33156-PA 454 CG33156-PA 60..454 59..453 2041 100 Plus
CG33156-PE 490 CG33156-PE 96..490 59..453 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 79..453 1933 100 Plus