Clone Sequence Records
BS05719.3prime Sequence
821 bp (700 high quality bases) assembled on 2005-12-03
> BS05719.3prime
ATGGTCTAGAAAGCTTTTACCAGCCGAATATCAGGTCCATGGCCTTGTCC
ATCAGACCGGAGCTCTTTTGCGGCACATCCTTCTGCGGCGATATGATGTT
ATCTTTGCGGGCCAGCTTGTACGACTGCTGGGAAAACGGTCGAATCGCAC
TGGGGCTGGTGGGGGGATCTCCTATCTCTGCATTGGGCACAGAGCCGATG
TTCTCCTTATCGATCACCGACCTATCCGTGCAGCGCGACACGCCCACCAT
CACATTGCCGGCGATGATTTTTTCGTTGTAGTTCAGCGCCTTGTCGCTCT
CGATGCGCGAGGAGTAGCGCACATACATCCAGTTGCCGTTCTGCGGGGCA
TGCACCACGTCCACAATGGTGCCGCAGACGGTGAAGTGCTGCAGCACCAT
GGAGCCGGCCCCCGGCGGGAACCCGAAGATGGTAACCCAAAAGTCGGATA
GGCGCGAGTTGCCGCCCGTCGTCACGGATGTGCCCAGGCCTCCAGCTGGC
GAGGCAGTGGCTCCAAGTGGCGAGCACAGTGCTCGCATCGAGGCATTGAT
GGCATTGGGCGCCCCGGGTGCGAACGAGTCATTCGTGTGATAGCTGCTCT
GGTAGCTCTGGTTCGGTGACTGCAACTGCAGCATGCCAAGATGGTTCTTC
TTCTTCGGGGTGACGGACTGTTCGCGCAGCGAGTCGAAGAGTCCCTGGGT
GGGCGGTCCCGTCTGGTGGTGGCTGTGCGTCTGGCCGTGCGCGGTCGTTG
AGCTGTTGGCGCCCACAGCCGTGTGGGCGCCCTCTTGGGCGGCGAACAGA
GTGCGTGTGCTCAGAGCGGAG
BS05719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-PA | 996 | CG6540-RA | 192..996 | 821..17 | 3975 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 1249 | CG6540-RA | 316..1120 | 821..17 | 3995 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18648556..18649360 | 821..17 | 3995 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:05:51 has no hits.
BS05719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:11 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-PA | 192..996 | 17..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:51 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-PA | 192..996 | 17..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:22:01 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 316..1124 | 14..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:52 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 316..1124 | 14..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:52 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18648556..18649364 | 14..821 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:22:01 Download gff for
BS05719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18542589..18543397 | 14..821 | 99 | | Minus |
BS05719.5prime Sequence
895 bp (814 high quality bases) assembled on 2005-12-02
> BS05719.5prime
GAAGTTATCAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACA
GTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGAT
CCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCG
CTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGC
TCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGC
GCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGAC
GCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGC
TGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTG
CAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGA
CTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCAC
TGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACA
TCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCAT
CTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCG
TCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGG
ATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAACTA
CAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTGCA
CGGATAGGTCGGTGATCGATAAGGAGAACATCGGCTCTGTGCCAATGCAG
AGATAGGAGATCCCCCCACAGCCCCAGTGCGATTCGACCGTTTTC
BS05719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-PA | 996 | CG6540-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG6540-PA | 996 | CG6540-RA | 827..854 | 842..869 | 140 | 100 | Plus |
| CG6540-PA | 996 | CG6540-RA | 855..881 | 869..895 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 1249 | CG6540-RA | 120..1005 | 12..895 | 4365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18648515..18649245 | 167..895 | 3555 | 99.7 | Plus |
| X | 23542271 | X | 18648301..18648456 | 12..167 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:08:14 has no hits.
BS05719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:12 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-PA | 1..881 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:51:52 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-PA | 1..881 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:29 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 113..1005 | 5..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:54 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 113..1005 | 5..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:54 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18648294..18648456 | 5..167 | 97 | -> | Plus |
| X | 18648516..18649245 | 168..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:29 Download gff for
BS05719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18542327..18542489 | 5..167 | 97 | -> | Plus |
| arm_X | 18542549..18543278 | 168..895 | 99 | | Plus |
BS05719.complete Sequence
1028 bp (1028 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635228
> BS05719.complete
GAAGTTATCAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACA
GTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGAT
CCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCG
CTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGC
TCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGC
GCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGAC
GCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGC
TGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTG
CAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGA
CTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCAC
TGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACA
TCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCAT
CTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCG
TCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGG
ATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAACTA
CAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTGCA
CGGATAGGTCGGTGATCGATAAGGAGAACATCGGCTCTGTGCCCAATGCA
GAGATAGGAGATCCCCCCACCAGCCCCAGTGCGATTCGACCGTTTTCCCA
GCAGTCGTACAAGCTGGCCCGCAAAGATAACATCATATCGCCGCAGAAGG
ATGTGCCGCAAAAGAGCTCCGGTCTGATGGACAAGGCCATGGACCTGATA
TTCGGCTGGTAAAAGCTTTCTAGACCAT
BS05719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 996 | CG6540-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-RA | 1249 | CG6540-RA | 120..1120 | 12..1012 | 4990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18648515..18649360 | 167..1012 | 4230 | 100 | Plus |
| X | 23542271 | X | 18648301..18648456 | 12..167 | 765 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:09:47 has no hits.
BS05719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:29 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 1..996 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:29 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 108..1119 | 5..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:24 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 125..1118 | 17..1010 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:29 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 108..1119 | 5..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:15 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6540-RA | 125..1118 | 17..1010 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:15 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18648306..18648456 | 17..167 | 100 | -> | Plus |
| X | 18648516..18649358 | 168..1010 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:24 Download gff for
BS05719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18542339..18542489 | 17..167 | 100 | -> | Plus |
| arm_X | 18542549..18543391 | 168..1010 | 100 | | Plus |
BS05719.pep Sequence
Translation from 16 to 1011
> BS05719.pep
MEPMNLGSPVNSPGSNQTQYLPPFLLGDPQGITPHKNTLSPKTGRSNISF
ATSPGGSSPHELNRSALSTRTLFAAQGGAHTAVGANSSTTAHGQTHSHHQ
TGPPTQGLFDSLREQSVTPKKKNHLGMLQLQSPNQSYQSSYHTNDSFAPG
APNAINASMRALCSPLGATASPAGGLGTSVTTGGNSRLSDFWVTIFGFPP
GAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKII
AGNVMVGVSRCTDRSVIDKENIGSVPNAEIGDPPTSPSAIRPFSQQSYKL
ARKDNIISPQKDVPQKSSGLMDKAMDLIFGW*
BS05719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6540-PA | 331 | CG6540-PA | 1..331 | 1..331 | 1746 | 100 | Plus |
