Clone BS05733 Report

Search the DGRC for BS05733

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG8636-RA
Protein status:BS05733.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05733.3prime Sequence

811 bp (810 high quality bases) assembled on 2005-12-03

> BS05733.3prime
ATGGTCTAGAAAGCTTCTAATTGTTCTGGGGTTTCGACCATTCGACGCTG
AGGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGC
CGCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTC
CGGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTC
TTCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGA
TATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCT
TTTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCA
TCGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGT
GTCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGT
TGCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCG
TTGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTC
GGACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGT
CGCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACC
TGCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTT
GTTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCG
TCGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAG
GATTTGATCGT

BS05733.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 16..810 811..17 3975 100 Minus
CG10881-PA 822 CG10881-RA 694..726 148..116 165 100 Minus
CG10881-PA 822 CG10881-RA 763..806 79..36 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 107..901 811..17 3975 100 Minus
CG10881-RA 979 CG10881-RA 672..878 232..26 570 85 Minus
CG10881-RA 979 CG10881-RA 156..481 727..402 385 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609373..2610167 17..811 3975 100 Plus
3R 32079331 3R 20408936..20409142 232..26 570 85 Minus
3R 32079331 3R 20408420..20408745 727..402 370 74.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:05:10 has no hits.

BS05733.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:38 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 16..810 17..811 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:29 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 16..810 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:56 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 107..901 17..811 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:50 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 107..901 17..811 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:50 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2609373..2610167 17..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:56 Download gff for BS05733.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503406..2504200 17..811 100   Plus

BS05733.5prime Sequence

839 bp (815 high quality bases) assembled on 2005-12-02

> BS05733.5prime
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACATTAGAAGCTTTCTAGACC

BS05733.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 1..805 17..821 4025 100 Plus
CG10881-PA 822 CG10881-RA 694..726 695..727 165 100 Plus
CG10881-PA 822 CG10881-RA 763..806 764..807 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..896 17..821 4025 100 Plus
CG10881-RA 979 CG10881-RA 672..878 611..817 570 85 Plus
CG10881-RA 979 CG10881-RA 156..481 116..441 385 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609378..2610182 821..17 4025 100 Minus
3R 32079331 3R 20408936..20409142 611..817 570 85 Plus
3R 32079331 3R 20408420..20408745 116..441 370 74.2 Plus
Blast to na_te.dros performed on 2015-02-11 09:41:18 has no hits.

BS05733.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:39 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 17..825 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:30 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:44 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..901 7..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:26 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..901 7..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:26 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2609373..2610186 12..825 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:44 Download gff for BS05733.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503406..2504219 12..825 99   Minus

BS05733.complete Sequence

842 bp (842 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635229

> BS05733.complete
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATTAGAAGCTTTCTAGACCAT

BS05733.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 810 CG8636-PA 1..810 17..826 4050 100 Plus
CG10881-RA 822 CG10881-PA 610..816 611..817 570 85 Plus
CG10881-RA 822 CG10881-PA 94..419 116..441 370 74.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..901 17..826 4050 100 Plus
CG10881-RA 979 CG10881-RA 672..878 611..817 570 85 Plus
CG10881-RA 979 CG10881-RA 156..481 116..441 370 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609373..2610182 826..17 4050 100 Minus
3R 32079331 3R 20408936..20409142 611..817 570 85 Plus
3R 32079331 3R 20408420..20408745 116..441 370 74.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:44 has no hits.

BS05733.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:23 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:40 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 112..927 7..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:01 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 92..901 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:23 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 112..927 7..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:07 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 92..901 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:07 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
X 2609373..2610182 17..826 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:01 Download gff for BS05733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503406..2504215 17..826 100   Minus

BS05733.pep Sequence

Translation from 16 to 825

> BS05733.pep
MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKV
VRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFL
NSKEDEKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAMDTNMMEKKA
SAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT
EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILN
GHGYDHLILSVEWSKPQNN*

BS05733.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 269 CG8636-PA 1..269 1..269 1417 100 Plus
CG10881-PA 273 CG10881-PA 1..272 4..267 989 70 Plus