Clone Sequence Records
BS05733.3prime Sequence
811 bp (810 high quality bases) assembled on 2005-12-03
> BS05733.3prime
ATGGTCTAGAAAGCTTCTAATTGTTCTGGGGTTTCGACCATTCGACGCTG
AGGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGC
CGCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTC
CGGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTC
TTCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGA
TATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCT
TTTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCA
TCGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGT
GTCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGT
TGCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCG
TTGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTC
GGACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGT
CGCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACC
TGCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTT
GTTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCG
TCGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAG
GATTTGATCGT
BS05733.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 16..810 | 811..17 | 3975 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 694..726 | 148..116 | 165 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 763..806 | 79..36 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 107..901 | 811..17 | 3975 | 100 | Minus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 232..26 | 570 | 85 | Minus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 727..402 | 385 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609373..2610167 | 17..811 | 3975 | 100 | Plus |
3R | 32079331 | 3R | 20408936..20409142 | 232..26 | 570 | 85 | Minus |
3R | 32079331 | 3R | 20408420..20408745 | 727..402 | 370 | 74.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:05:10 has no hits.
BS05733.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:38 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 16..810 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:29 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 16..810 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:56 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 107..901 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:50 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 107..901 | 17..811 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:50 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609373..2610167 | 17..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:56 Download gff for
BS05733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503406..2504200 | 17..811 | 100 | | Plus |
BS05733.5prime Sequence
839 bp (815 high quality bases) assembled on 2005-12-02
> BS05733.5prime
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACATTAGAAGCTTTCTAGACC
BS05733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
CG10881-PA | 822 | CG10881-RA | 694..726 | 695..727 | 165 | 100 | Plus |
CG10881-PA | 822 | CG10881-RA | 763..806 | 764..807 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..896 | 17..821 | 4025 | 100 | Plus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 116..441 | 385 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609378..2610182 | 821..17 | 4025 | 100 | Minus |
3R | 32079331 | 3R | 20408936..20409142 | 611..817 | 570 | 85 | Plus |
3R | 32079331 | 3R | 20408420..20408745 | 116..441 | 370 | 74.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:41:18 has no hits.
BS05733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:39 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:30 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:44 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..901 | 7..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:26 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..901 | 7..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:26 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609373..2610186 | 12..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:44 Download gff for
BS05733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503406..2504219 | 12..825 | 99 | | Minus |
BS05733.complete Sequence
842 bp (842 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635229
> BS05733.complete
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATTAGAAGCTTTCTAGACCAT
BS05733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 810 | CG8636-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG10881-RA | 822 | CG10881-PA | 610..816 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 822 | CG10881-PA | 94..419 | 116..441 | 370 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..901 | 17..826 | 4050 | 100 | Plus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 116..441 | 370 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609373..2610182 | 826..17 | 4050 | 100 | Minus |
3R | 32079331 | 3R | 20408936..20409142 | 611..817 | 570 | 85 | Plus |
3R | 32079331 | 3R | 20408420..20408745 | 116..441 | 370 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:44 has no hits.
BS05733.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:23 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:40 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 112..927 | 7..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:01 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 92..901 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:23 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 112..927 | 7..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:07 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 92..901 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:07 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609373..2610182 | 17..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:01 Download gff for
BS05733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503406..2504215 | 17..826 | 100 | | Minus |
BS05733.pep Sequence
Translation from 16 to 825
> BS05733.pep
MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKV
VRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFL
NSKEDEKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAMDTNMMEKKA
SAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT
EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILN
GHGYDHLILSVEWSKPQNN*
BS05733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 269 | CG8636-PA | 1..269 | 1..269 | 1417 | 100 | Plus |
CG10881-PA | 273 | CG10881-PA | 1..272 | 4..267 | 989 | 70 | Plus |