Clone Sequence Records
BS05742.3prime Sequence
841 bp (819 high quality bases) assembled on 2005-12-03
> BS05742.3prime
ATGGTCTAGAAAGCTTTTACAGCTGCTCCATGGACTCCAATTTTAGTAGG
CGTTGCTCGCCTAAATGCTGCTCCAGGGCCTCCAGCATGGCGTCCAGAAA
GTCCGATAGACTGATCTTCTGGTCCAACTCGAACAGAGTGCTGCTGGTGT
ACTGGGCATGGGCCAAAAGCGGCAGCTTCCGCAATGTGCGGCCACTTAGC
CCAACGCTGCGCTCAGCCAATTGCGTCAGCAAACCTTCCTCGGCGTCCTC
CGACTCCAGAACTTCGCGCTGCAGAACTCCCGCCGACATTAGTTCAGCCA
GCATGCCCTTGTATATTTCTCGGATAGCGGAAATGCCGGGATAACCAATG
AAGAGTCGGATATCGGCGCGATCCACGAAGGCCAGATCAATGCTTTGAGC
CAGGTTAGATGTGGCCAGGATCAGTACGTTGGGACAAGTCTTAAGGGAAT
CCAGCTGGGTGAGTACCGCATTTACCACACGCATGGCATCCCTTGGTTCA
TTACTAGACATGGCACTCCTGGCGTATGCCAGCGACTCAACCTCGTCGAT
CAGCACGCACACCAGGTTGTTGGGATCGGAGACTAGCTCTGCAATCTTAT
TAAACAGTTGCGCCACTAGCTTGCCGCTCTCAGAGAACCACTTCGAGAAC
AGGCTGTGGCTGTTTATCTCCACCAGGTGCGTGTAAGCATAGCTGCCTTG
GGTACGGATAGACAACTTCTGGGCCAGGGCCTTGCAAAGGCTCGTCTTTC
CTGTTCCAGGTGGTCCGTGGAGCAGTATCAGTCGGTTACAGGCAATCACA
TTCGTGTCCACACGGTGTTCAGAGAACATCAGTGCCGAAAG
BS05742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31453-PA | 1266 | CG31453-RA | 442..1266 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pch2-RB | 2108 | CG31453-RB | 534..1359 | 841..16 | 4130 | 100 | Minus |
pch2-RA | 1490 | CG31453-RA | 534..1359 | 841..16 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8560289..8561114 | 16..841 | 4130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:44:58 has no hits.
BS05742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:57 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-PA | 442..1266 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:55 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-PA | 442..1266 | 17..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:03:25 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 534..1359 | 16..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:57 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 534..1359 | 16..841 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:57 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8560289..8561114 | 16..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:03:25 Download gff for
BS05742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4386011..4386836 | 16..841 | 100 | | Plus |
BS05742.5prime Sequence
890 bp (803 high quality bases) assembled on 2005-12-03
> BS05742.5prime
GAAGTTATCAGTCGACATGAGTTTTTTAAGCAACAGCGACACAGTTCATG
TGGAAGTTTGCCTGCGAGGTAACGATCTTCGCTCTAATGCAATTCGCAAC
AATGTGGAGACAGCCCTAAAGGCCTATTTTCAGACGGCTAGAAAATTGCC
CAGAAATGTGTCATTCCTGCCGGATCTCACAGCTGAGCAAACTGAACATG
TGCACTCTGTTCTCCTGGAGCGCGACAATGGCGGTGTGCAGCCTCTAAAG
GTCGCCGAGACCAAATTTCGCTTCCATTTCTATGCCACTAGGCCAGAGGA
AGGGCAACTTGGTCTGTTTTCGGGCGAAGAAGGCTCGGATGGCATCGATA
GCATCGTGGCGGCCAGTCATGCGCTCCTGCCAGCCGCTCAGTTTGTGGGT
CTGTGGGAGAACCTCATCTACGAGACAGGACTCAAGGAAAAGCTTCTAAA
GTTTGCTCTTTCGGCACTGATGTTCTCTGAACACCGTGTGGACACGAATG
TGATTGCCTGTAACCGACTGATACTGCTCCACGGACCACCTGGAACAGGA
AAGACGAGCCTTTGCAAGGCCCTGGCCCAGAAGTTGTCTATCCGTACCCA
AGGCAGCTATGCTTACACGCACCTGGTGGAGATAAACAGCCACAGCCTGT
TCTCGAAGTGGTTCTCTGAGAGCGGCAAGCTAGTGGCGCAACTGTTTAAT
AAGATTGCAGAGCTAGTCTCCGATCCCAACAACCTGGTGTGCGTGCTGAT
CGACGAGGTTGAGTCGCTGGCATACGCCAGGAGTGCCATGTCTAGTAATG
AACCAAGGGATGCCATGCGTGTGGGTAATGCGGTACTCACCCAGCTGGAT
TCCCTAAGACTTGTCCCAACGTACTGATCCTGGCCACATC
BS05742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31453-PA | 1266 | CG31453-RA | 1..839 | 17..855 | 4145 | 99.7 | Plus |
CG31453-PA | 1266 | CG31453-RA | 840..875 | 855..890 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pch2-RB | 2108 | CG31453-RB | 93..967 | 17..890 | 4320 | 99.7 | Plus |
pch2-RA | 1490 | CG31453-RA | 93..967 | 17..890 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8560681..8561131 | 890..441 | 2175 | 99.3 | Minus |
3R | 32079331 | 3R | 8561193..8561556 | 442..79 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 8561611..8561672 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:33 has no hits.
BS05742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:58 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-PA | 1..875 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:57 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-PA | 1..875 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:21 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 86..967 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:47:08 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 86..967 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:47:08 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8560681..8561129 | 443..890 | 99 | <- | Minus |
3R | 8561193..8561556 | 79..442 | 100 | <- | Minus |
3R | 8561611..8561679 | 9..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:21 Download gff for
BS05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4386403..4386851 | 443..890 | 99 | <- | Minus |
arm_3R | 4386915..4387278 | 79..442 | 100 | <- | Minus |
arm_3R | 4387333..4387401 | 9..78 | 94 | | Minus |
BS05742.complete Sequence
1298 bp (1298 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635230
> BS05742.complete
GAAGTTATCAGTCGACATGAGTTTTTTAAGCAACAGCGACACAGTTCATG
TGGAAGTTTGCCTGCGAGGTAACGATCTTCGCTCTAATGCAATTCGCAAC
AATGTGGAGACAGCCCTAAAGGCCTATTTTCAGACGGCTAGAAAATTGCC
CAGAAATGTGTCATTCCTGCCGGATCTCACAGCTGAGCAAACTGAACATG
TGCACTCTGTTCTCCTGGAGCGCGACAATGGCGGTGTGCAGCCTCTAAAG
GTCGCCGAGACCAAATTTCGCTTCCATTTCTATGCCACTAGGCCAGAGGA
AGGGCAACTTGGTCTGTTTTCGGGCGAAGAAGGCTCGGATGGCATCGATA
GCATCGTGGCGGCCAGTCATGCGCTCCTGCCAGCCGCTCAGTTTGTGGGT
CTGTGGGAGAACCTCATCTACGAGACAGGACTCAAGGAAAAGCTTCTAAA
GTTTGCTCTTTCGGCACTGATGTTCTCTGAACACCGTGTGGACACGAATG
TGATTGCCTGTAACCGACTGATACTGCTCCACGGACCACCTGGAACAGGA
AAGACGAGCCTTTGCAAGGCCCTGGCCCAGAAGTTGTCTATCCGTACCCA
AGGCAGCTATGCTTACACGCACCTGGTGGAGATAAACAGCCACAGCCTGT
TCTCGAAGTGGTTCTCTGAGAGCGGCAAGCTAGTGGCGCAACTGTTTAAT
AAGATTGCAGAGCTAGTCTCCGATCCCAACAACCTGGTGTGCGTGCTGAT
CGACGAGGTTGAGTCGCTGGCATACGCCAGGAGTGCCATGTCTAGTAATG
AACCAAGGGATGCCATGCGTGTGGTAAATGCGGTACTCACCCAGCTGGAT
TCCCTTAAGACTTGTCCCAACGTACTGATCCTGGCCACATCTAACCTGGC
TCAAAGCATTGATCTGGCCTTCGTGGATCGCGCCGATATCCGACTCTTCA
TTGGTTATCCCGGCATTTCCGCTATCCGAGAAATATACAAGGGCATGCTG
GCTGAACTAATGTCGGCGGGAGTTCTGCAGCGCGAAGTTCTGGAGTCGGA
GGACGCCGAGGAAGGTTTGCTGACGCAATTGGCTGAGCGCAGCGTTGGGC
TAAGTGGCCGCACATTGCGGAAGCTGCCGCTTTTGGCCCATGCCCAGTAC
ACCAGCAGCACTCTGTTCGAGTTGGACCAGAAGATCAGTCTATCGGACTT
TCTGGACGCCATGCTGGAGGCCCTGGAGCAGCATTTAGGCGAGCAACGCC
TACTAAAATTGGAGTCCATGGAGCAGCTGTAAAAGCTTTCTAGACCAT
BS05742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pch2-RB | 1266 | CG31453-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
pch2-RA | 1266 | CG31453-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pch2-RB | 2108 | CG31453-RB | 93..1359 | 17..1283 | 6335 | 100 | Plus |
pch2-RA | 1490 | CG31453-RA | 93..1359 | 17..1283 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8560289..8561131 | 1283..441 | 4215 | 100 | Minus |
3R | 32079331 | 3R | 8561193..8561556 | 442..79 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 8561611..8561672 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:45:52 has no hits.
BS05742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:14 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:11 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-RA | 51..1324 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:19 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 93..1356 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:14 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31453-RA | 51..1324 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:59 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pch2-RA | 93..1356 | 17..1280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:59 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8560292..8561129 | 443..1280 | 100 | <- | Minus |
3R | 8561193..8561556 | 79..442 | 100 | <- | Minus |
3R | 8561611..8561672 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:19 Download gff for
BS05742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4386014..4386851 | 443..1280 | 100 | <- | Minus |
arm_3R | 4386915..4387278 | 79..442 | 100 | <- | Minus |
arm_3R | 4387333..4387394 | 17..78 | 100 | | Minus |
BS05742.pep Sequence
Translation from 16 to 1281
> BS05742.pep
MSFLSNSDTVHVEVCLRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSF
LPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQLGL
FSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSA
LMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAY
THLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVES
LAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDL
AFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG
LLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAML
EALEQHLGEQRLLKLESMEQL*
BS05742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pch2-PB | 421 | CG31453-PB | 1..421 | 1..421 | 2101 | 100 | Plus |
pch2-PA | 421 | CG31453-PA | 1..421 | 1..421 | 2101 | 100 | Plus |
TER94-PD | 759 | CG2331-PD | 466..645 | 166..370 | 182 | 28.4 | Plus |
TER94-PA | 801 | CG2331-PA | 508..687 | 166..370 | 182 | 28.4 | Plus |
TER94-PE | 825 | CG2331-PE | 533..712 | 166..370 | 182 | 28.4 | Plus |
TER94-PD | 759 | CG2331-PD | 194..394 | 167..402 | 160 | 25.6 | Plus |
TER94-PA | 801 | CG2331-PA | 236..436 | 167..402 | 160 | 25.6 | Plus |