Clone BS05742 Report

Search the DGRC for BS05742

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptpch2-RA
Protein status:BS05742.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05742.3prime Sequence

841 bp (819 high quality bases) assembled on 2005-12-03

> BS05742.3prime
ATGGTCTAGAAAGCTTTTACAGCTGCTCCATGGACTCCAATTTTAGTAGG
CGTTGCTCGCCTAAATGCTGCTCCAGGGCCTCCAGCATGGCGTCCAGAAA
GTCCGATAGACTGATCTTCTGGTCCAACTCGAACAGAGTGCTGCTGGTGT
ACTGGGCATGGGCCAAAAGCGGCAGCTTCCGCAATGTGCGGCCACTTAGC
CCAACGCTGCGCTCAGCCAATTGCGTCAGCAAACCTTCCTCGGCGTCCTC
CGACTCCAGAACTTCGCGCTGCAGAACTCCCGCCGACATTAGTTCAGCCA
GCATGCCCTTGTATATTTCTCGGATAGCGGAAATGCCGGGATAACCAATG
AAGAGTCGGATATCGGCGCGATCCACGAAGGCCAGATCAATGCTTTGAGC
CAGGTTAGATGTGGCCAGGATCAGTACGTTGGGACAAGTCTTAAGGGAAT
CCAGCTGGGTGAGTACCGCATTTACCACACGCATGGCATCCCTTGGTTCA
TTACTAGACATGGCACTCCTGGCGTATGCCAGCGACTCAACCTCGTCGAT
CAGCACGCACACCAGGTTGTTGGGATCGGAGACTAGCTCTGCAATCTTAT
TAAACAGTTGCGCCACTAGCTTGCCGCTCTCAGAGAACCACTTCGAGAAC
AGGCTGTGGCTGTTTATCTCCACCAGGTGCGTGTAAGCATAGCTGCCTTG
GGTACGGATAGACAACTTCTGGGCCAGGGCCTTGCAAAGGCTCGTCTTTC
CTGTTCCAGGTGGTCCGTGGAGCAGTATCAGTCGGTTACAGGCAATCACA
TTCGTGTCCACACGGTGTTCAGAGAACATCAGTGCCGAAAG

BS05742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31453-PA 1266 CG31453-RA 442..1266 841..17 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-RB 2108 CG31453-RB 534..1359 841..16 4130 100 Minus
pch2-RA 1490 CG31453-RA 534..1359 841..16 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8560289..8561114 16..841 4130 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:44:58 has no hits.

BS05742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:57 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31453-PA 442..1266 17..841 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:55 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31453-PA 442..1266 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:03:25 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 534..1359 16..841 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:51:57 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 534..1359 16..841 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:51:57 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8560289..8561114 16..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:03:25 Download gff for BS05742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4386011..4386836 16..841 100   Plus

BS05742.5prime Sequence

890 bp (803 high quality bases) assembled on 2005-12-03

> BS05742.5prime
GAAGTTATCAGTCGACATGAGTTTTTTAAGCAACAGCGACACAGTTCATG
TGGAAGTTTGCCTGCGAGGTAACGATCTTCGCTCTAATGCAATTCGCAAC
AATGTGGAGACAGCCCTAAAGGCCTATTTTCAGACGGCTAGAAAATTGCC
CAGAAATGTGTCATTCCTGCCGGATCTCACAGCTGAGCAAACTGAACATG
TGCACTCTGTTCTCCTGGAGCGCGACAATGGCGGTGTGCAGCCTCTAAAG
GTCGCCGAGACCAAATTTCGCTTCCATTTCTATGCCACTAGGCCAGAGGA
AGGGCAACTTGGTCTGTTTTCGGGCGAAGAAGGCTCGGATGGCATCGATA
GCATCGTGGCGGCCAGTCATGCGCTCCTGCCAGCCGCTCAGTTTGTGGGT
CTGTGGGAGAACCTCATCTACGAGACAGGACTCAAGGAAAAGCTTCTAAA
GTTTGCTCTTTCGGCACTGATGTTCTCTGAACACCGTGTGGACACGAATG
TGATTGCCTGTAACCGACTGATACTGCTCCACGGACCACCTGGAACAGGA
AAGACGAGCCTTTGCAAGGCCCTGGCCCAGAAGTTGTCTATCCGTACCCA
AGGCAGCTATGCTTACACGCACCTGGTGGAGATAAACAGCCACAGCCTGT
TCTCGAAGTGGTTCTCTGAGAGCGGCAAGCTAGTGGCGCAACTGTTTAAT
AAGATTGCAGAGCTAGTCTCCGATCCCAACAACCTGGTGTGCGTGCTGAT
CGACGAGGTTGAGTCGCTGGCATACGCCAGGAGTGCCATGTCTAGTAATG
AACCAAGGGATGCCATGCGTGTGGGTAATGCGGTACTCACCCAGCTGGAT
TCCCTAAGACTTGTCCCAACGTACTGATCCTGGCCACATC

BS05742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31453-PA 1266 CG31453-RA 1..839 17..855 4145 99.7 Plus
CG31453-PA 1266 CG31453-RA 840..875 855..890 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-RB 2108 CG31453-RB 93..967 17..890 4320 99.7 Plus
pch2-RA 1490 CG31453-RA 93..967 17..890 4320 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8560681..8561131 890..441 2175 99.3 Minus
3R 32079331 3R 8561193..8561556 442..79 1820 100 Minus
3R 32079331 3R 8561611..8561672 78..17 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:17:33 has no hits.

BS05742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:58 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31453-PA 1..875 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:57 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31453-PA 1..875 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:21 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 86..967 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:47:08 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 86..967 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:47:08 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8560681..8561129 443..890 99 <- Minus
3R 8561193..8561556 79..442 100 <- Minus
3R 8561611..8561679 9..78 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:21 Download gff for BS05742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4386403..4386851 443..890 99 <- Minus
arm_3R 4386915..4387278 79..442 100 <- Minus
arm_3R 4387333..4387401 9..78 94   Minus

BS05742.complete Sequence

1298 bp (1298 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635230

> BS05742.complete
GAAGTTATCAGTCGACATGAGTTTTTTAAGCAACAGCGACACAGTTCATG
TGGAAGTTTGCCTGCGAGGTAACGATCTTCGCTCTAATGCAATTCGCAAC
AATGTGGAGACAGCCCTAAAGGCCTATTTTCAGACGGCTAGAAAATTGCC
CAGAAATGTGTCATTCCTGCCGGATCTCACAGCTGAGCAAACTGAACATG
TGCACTCTGTTCTCCTGGAGCGCGACAATGGCGGTGTGCAGCCTCTAAAG
GTCGCCGAGACCAAATTTCGCTTCCATTTCTATGCCACTAGGCCAGAGGA
AGGGCAACTTGGTCTGTTTTCGGGCGAAGAAGGCTCGGATGGCATCGATA
GCATCGTGGCGGCCAGTCATGCGCTCCTGCCAGCCGCTCAGTTTGTGGGT
CTGTGGGAGAACCTCATCTACGAGACAGGACTCAAGGAAAAGCTTCTAAA
GTTTGCTCTTTCGGCACTGATGTTCTCTGAACACCGTGTGGACACGAATG
TGATTGCCTGTAACCGACTGATACTGCTCCACGGACCACCTGGAACAGGA
AAGACGAGCCTTTGCAAGGCCCTGGCCCAGAAGTTGTCTATCCGTACCCA
AGGCAGCTATGCTTACACGCACCTGGTGGAGATAAACAGCCACAGCCTGT
TCTCGAAGTGGTTCTCTGAGAGCGGCAAGCTAGTGGCGCAACTGTTTAAT
AAGATTGCAGAGCTAGTCTCCGATCCCAACAACCTGGTGTGCGTGCTGAT
CGACGAGGTTGAGTCGCTGGCATACGCCAGGAGTGCCATGTCTAGTAATG
AACCAAGGGATGCCATGCGTGTGGTAAATGCGGTACTCACCCAGCTGGAT
TCCCTTAAGACTTGTCCCAACGTACTGATCCTGGCCACATCTAACCTGGC
TCAAAGCATTGATCTGGCCTTCGTGGATCGCGCCGATATCCGACTCTTCA
TTGGTTATCCCGGCATTTCCGCTATCCGAGAAATATACAAGGGCATGCTG
GCTGAACTAATGTCGGCGGGAGTTCTGCAGCGCGAAGTTCTGGAGTCGGA
GGACGCCGAGGAAGGTTTGCTGACGCAATTGGCTGAGCGCAGCGTTGGGC
TAAGTGGCCGCACATTGCGGAAGCTGCCGCTTTTGGCCCATGCCCAGTAC
ACCAGCAGCACTCTGTTCGAGTTGGACCAGAAGATCAGTCTATCGGACTT
TCTGGACGCCATGCTGGAGGCCCTGGAGCAGCATTTAGGCGAGCAACGCC
TACTAAAATTGGAGTCCATGGAGCAGCTGTAAAAGCTTTCTAGACCAT

BS05742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-RB 1266 CG31453-PB 1..1266 17..1282 6330 100 Plus
pch2-RA 1266 CG31453-PA 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-RB 2108 CG31453-RB 93..1359 17..1283 6335 100 Plus
pch2-RA 1490 CG31453-RA 93..1359 17..1283 6335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8560289..8561131 1283..441 4215 100 Minus
3R 32079331 3R 8561193..8561556 442..79 1820 100 Minus
3R 32079331 3R 8561611..8561672 78..17 310 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:45:52 has no hits.

BS05742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:14 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 1..1266 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:11 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 51..1324 9..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:19 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 93..1356 17..1280 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:14 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
CG31453-RA 51..1324 9..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:59 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
pch2-RA 93..1356 17..1280 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:59 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8560292..8561129 443..1280 100 <- Minus
3R 8561193..8561556 79..442 100 <- Minus
3R 8561611..8561672 17..78 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:19 Download gff for BS05742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4386014..4386851 443..1280 100 <- Minus
arm_3R 4386915..4387278 79..442 100 <- Minus
arm_3R 4387333..4387394 17..78 100   Minus

BS05742.pep Sequence

Translation from 16 to 1281

> BS05742.pep
MSFLSNSDTVHVEVCLRGNDLRSNAIRNNVETALKAYFQTARKLPRNVSF
LPDLTAEQTEHVHSVLLERDNGGVQPLKVAETKFRFHFYATRPEEGQLGL
FSGEEGSDGIDSIVAASHALLPAAQFVGLWENLIYETGLKEKLLKFALSA
LMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQKLSIRTQGSYAY
THLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVES
LAYARSAMSSNEPRDAMRVVNAVLTQLDSLKTCPNVLILATSNLAQSIDL
AFVDRADIRLFIGYPGISAIREIYKGMLAELMSAGVLQREVLESEDAEEG
LLTQLAERSVGLSGRTLRKLPLLAHAQYTSSTLFELDQKISLSDFLDAML
EALEQHLGEQRLLKLESMEQL*

BS05742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
pch2-PB 421 CG31453-PB 1..421 1..421 2101 100 Plus
pch2-PA 421 CG31453-PA 1..421 1..421 2101 100 Plus
TER94-PD 759 CG2331-PD 466..645 166..370 182 28.4 Plus
TER94-PA 801 CG2331-PA 508..687 166..370 182 28.4 Plus
TER94-PE 825 CG2331-PE 533..712 166..370 182 28.4 Plus
TER94-PD 759 CG2331-PD 194..394 167..402 160 25.6 Plus
TER94-PA 801 CG2331-PA 236..436 167..402 160 25.6 Plus