Clone BS05743 Report

Search the DGRC for BS05743

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5522-RC
Protein status:BS05743.pep: full length peptide match
Sequenced Size:2030

Clone Sequence Records

BS05743.3prime Sequence

928 bp (816 high quality bases) assembled on 2005-12-03

> BS05743.3prime
ATGGTCTAGAAAGCTTTTATTCAAAGGACATTAGGTTGGTGGGCAGAGGT
TTGGGCACTCGCATGGTGGCCAATTTGCAAATGGCATTCGACCAGAGATG
CGTCATCTGGGGACTGTCCGTCCGGAAGCGATAGACGGTGCCCAGAGTTC
GGTGGCACAGTTCGAAGGTGTTCTTGTGCTTGGTGTTATCGCTCACGTGG
GCATACCATCCATCCAATGGACACACTTTGCACGGTTCCCGCTTAAAGTC
GTTGCGTTCGCTTCCTTTAAAGGATTTGGGTGGGAAATACACCAGCGAGT
TGGCCCAAATCTGTAGCCAGTATCGTTGCCAAGATGCCACCGCTGGCTTC
CTTCCCTCCTTTTGAACTGTTTTACGCCGGACACATCCGTGCATGGCGGC
TGCTGCCTCTGGTGACATCAAATCGCAATCGCTGCCGGTAAAATCACACA
TAATTCCCTCTGCACTTTCCAACGATGTTAGATCTGCTTGGGATAGGGCA
TCGCTGTGCTCCAAGACCGAATCATCTAGCAGGTGGTGACGAGGCTGCAC
TTGACTCGGATCAAGTTCCAGGTGCAGGTGGTGAGGATGTCCATCGCTGT
GGTTGTGCGTTGCAATCTTGCCAAAAATGTTGGTGCCCAGACTGCGACAC
TTGCGATGGCCTGGCACAAATTTTGTGCCGCTTGCCATTCGCATGGAGCC
AATGGTTTTGGCCGGCGAGAGATTTAGGCATCCAAGGGCCGGAGTAACTA
CTTCCACATTGAAGGACTCTTTTGAGCTGCAGGACGAAGAACTGGGTCCA
GAGGGCGACGCAGGTTCCAGGTTTAGAGAGCGCTTGTACTGATCCTCCTC
GAATATGTTTCTGCACTCCTCTATATACCTTATCGAAGTCAAATACTTTT
GTGTCGCCTCATGCTTCTGCAAATGCTT

BS05743.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PD 1998 CG5522-RD 1156..1998 859..17 4215 100 Minus
CG5522-PC 1998 CG5522-RC 1156..1998 859..17 4215 100 Minus
CG5522-PF 1998 CG5522-RF 1156..1998 859..17 4215 100 Minus
CG5522-PA 2109 CG5522-RA 1497..2109 629..17 3065 100 Minus
CG5522-PE 2109 CG5522-RE 1497..2109 629..17 3065 100 Minus
CG5522-PB 2109 CG5522-RB 1497..2109 629..17 3065 100 Minus
CG5522-PA 2109 CG5522-RA 1156..1385 859..630 1150 100 Minus
CG5522-PE 2109 CG5522-RE 1156..1385 859..630 1150 100 Minus
CG5522-PB 2109 CG5522-RB 1156..1385 859..630 1150 100 Minus
CG5522-PD 1998 CG5522-RD 1087..1150 928..865 320 100 Minus
CG5522-PC 1998 CG5522-RC 1087..1150 928..865 320 100 Minus
CG5522-PF 1998 CG5522-RF 1087..1150 928..865 320 100 Minus
CG5522-PA 2109 CG5522-RA 1087..1150 928..865 320 100 Minus
CG5522-PE 2109 CG5522-RE 1087..1150 928..865 320 100 Minus
CG5522-PB 2109 CG5522-RB 1087..1150 928..865 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 1446..2357 928..17 4515 99.8 Minus
CG5522-RC 3516 CG5522-RC 1484..2395 928..17 4515 99.8 Minus
CG5522-RD 2358 CG5522-RD 1345..2256 928..17 4515 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16790739..16791351 629..17 3065 100 Minus
2R 25286936 2R 16789712..16789915 833..630 1020 100 Minus
2R 25286936 2R 16789541..16789636 928..833 405 94.8 Minus
Blast to na_te.dros performed on 2015-02-12 01:28:28 has no hits.

BS05743.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:59 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PF 1087..1998 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:58 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PC 1087..1998 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:48 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 1345..2258 13..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:44 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 1345..2258 13..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:44 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16789541..16789635 834..928 97 -> Minus
2R 16789712..16789915 630..833 100 -> Minus
2R 16790739..16791353 13..629 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:48 Download gff for BS05743.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12677046..12677140 834..928 97 -> Minus
arm_2R 12677217..12677420 630..833 100 -> Minus
arm_2R 12678244..12678858 13..629 99   Minus

BS05743.5prime Sequence

907 bp (840 high quality bases) assembled on 2005-12-02

> BS05743.5prime
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAG

BS05743.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PA 2109 CG5522-RA 1..891 17..907 4455 100 Plus
CG5522-PD 1998 CG5522-RD 1..891 17..907 4455 100 Plus
CG5522-PC 1998 CG5522-RC 1..891 17..907 4455 100 Plus
CG5522-PE 2109 CG5522-RE 1..891 17..907 4455 100 Plus
CG5522-PB 2109 CG5522-RB 1..891 17..907 4455 100 Plus
CG5522-PF 1998 CG5522-RF 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 359..1250 16..907 4460 100 Plus
CG5522-RB 3589 CG5522-RB 359..1250 16..907 4460 100 Plus
CG5522-RE 3627 CG5522-RE 397..1288 16..907 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16788324..16788666 75..417 1715 100 Plus
2R 25286936 2R 16788791..16789121 418..748 1655 100 Plus
2R 25286936 2R 16789182..16789345 744..907 820 100 Plus
2R 25286936 2R 16788200..16788260 16..76 305 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:05:05 has no hits.

BS05743.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:00 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PD 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:00 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PF 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:58 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RE 397..1288 16..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:31 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RE 397..1288 16..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:31 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16788200..16788260 16..76 100 -> Plus
2R 16788326..16788666 77..417 100 -> Plus
2R 16788791..16789118 418..745 100 -> Plus
2R 16789184..16789345 746..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:58 Download gff for BS05743.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12675831..12676171 77..417 100 -> Plus
arm_2R 12675705..12675765 16..76 100 -> Plus
arm_2R 12676296..12676623 418..745 100 -> Plus
arm_2R 12676689..12676850 746..907 100   Plus

BS05743.complete Sequence

2030 bp assembled on 2010-05-10

GenBank Submission: KX794911

> BS05743.complete
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAGGACAACTGGGCGAATCTGCGCTCCTACCTCGAGAGCCTCCGCC
TGCCCTGCATCCCCTATCTGGGTCTCTTTCTCACCGATCTGATCTACATC
GATTTGGCCCACCCACATAAGGGCGGATTGGAGCCAGAGCAGCGTCGCAA
TAAGATGAACAATATATTGCGTGTAATTTCGAACTATCAACAGTCGAACT
ATAAGCATTTGCAGAAGCATGAGGCGACACAAAAGTATTTGACTTCGATA
AGGTATATAGAGGAGTTGCAGAACATATTCGAGGAGGATCAGTACAAGCG
CTCTCTAAACCTGGAACCTGCGTCGCCCTCTGGACCCAGTTCTTCGTCCT
GCAGCTCAAAAGAGTCCTTCAATGTGGAAGTAGTTACTCCGGCCCTTGGA
TGCCTAAATCTCTCGCCGGCCAAAACCATTGGCTCCATGCGAATGGCAAG
CGGCACAAAATTTGTGCCAGGCCATCGCAAGTGTCGCAGTCTGGGCACCA
ACATTTTTGGCAAGATTGCAACGCACAACCACAGCGATGGACATCCTCAC
CACCTGCACCTGGAACTTGATCCGAGTCAAGTGCAGCCTCGTCACCACCT
GCTAGATGATTCGGTCTTGGAGCACAGCGATGCCCTATCCCAAGCAGATC
TAACATCGTTGGAAAGTGCAGAGGGAATTATGTGTGATTTTACCGGCAGC
GATTGCGATTTGATGTCACCAGAGGCAGCAGCCGCCATGCACGGATGTGT
CCGGCGTAAAACAGTTCAAAAGGAGGGAAGGAAGCCAGCGGTGGCATCTT
GGCAACGATACTGGCTACAGATTTGGGCCAACTCGCTGGTGTATTTCCCA
CCCAAATCCTTTAAAGGAAGCGAACGCAACGACTTTAAGCGGGAACCGTG
CAAAGTGTGTCCATTGGATGGATGGTATGCCCACGTGAGCGATAACACCA
AGCACAAGAACACCTTCGAACTGTGCCACCGAACTCTGGGCACCGTCTAT
CGCTTCCGGACGGACAGTCCCCAGATGACGCATCTCTGGTCGAATGCCAT
TTGCAAATTGGCCACCATGCGAGTGCCCAAACCTCTGCCCACCAACCTAA
TGTCCTTTGAATAAAAGCTTTCTAGACCAT

BS05743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 1998 CG5522-PF 1..1998 17..2014 9990 100 Plus
CG5522-RC 1998 CG5522-PC 1..1998 17..2014 9990 100 Plus
CG5522-RD 1998 CG5522-PD 1..1998 17..2014 9990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 359..2357 16..2014 9995 100 Plus
CG5522-RC 3516 CG5522-RC 397..2395 16..2014 9995 100 Plus
CG5522-RD 2358 CG5522-RD 258..2256 16..2014 9995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16790739..16791351 1402..2014 3065 100 Plus
2R 25286936 2R 16789182..16789636 744..1198 2275 100 Plus
2R 25286936 2R 16788324..16788666 75..417 1715 100 Plus
2R 25286936 2R 16788791..16789121 418..748 1655 100 Plus
2R 25286936 2R 16789712..16789915 1198..1401 1020 100 Plus
2R 25286936 2R 16788200..16788260 16..76 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:56:53 has no hits.

BS05743.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:46 Download gff for BS05743.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RF 360..2355 17..2012 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:31 Download gff for BS05743.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 259..2254 17..2012 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:01 Download gff for BS05743.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 259..2254 17..2012 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:01 Download gff for BS05743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16788201..16788260 17..76 100 -> Plus
2R 16788326..16788666 77..417 100 -> Plus
2R 16788791..16789118 418..745 100 -> Plus
2R 16789184..16789635 746..1197 100 -> Plus
2R 16789712..16789915 1198..1401 100 -> Plus
2R 16790739..16791349 1402..2012 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:31 Download gff for BS05743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12675706..12675765 17..76 100 -> Plus
arm_2R 12675831..12676171 77..417 100 -> Plus
arm_2R 12676296..12676623 418..745 100 -> Plus
arm_2R 12676689..12677140 746..1197 100 -> Plus
arm_2R 12677217..12677420 1198..1401 100 -> Plus
arm_2R 12678244..12678854 1402..2012 100   Plus

BS05743.pep Sequence

Translation from 16 to 2013

> BS05743.pep
MMRYSEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPP
PSQQQQQPTRVSKQRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQAS
KTLNIKSTRRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHA
SIKQLDAVILSALRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDK
HVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHE
LNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNW
ANLRSYLESLRLPCIPYLGLFLTDLIYIDLAHPHKGGLEPEQRRNKMNNI
LRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLE
PASPSGPSSSSCSSKESFNVEVVTPALGCLNLSPAKTIGSMRMASGTKFV
PGHRKCRSLGTNIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSV
LEHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAAMHGCVRRKTV
QKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPL
DGWYAHVSDNTKHKNTFELCHRTLGTVYRFRTDSPQMTHLWSNAICKLAT
MRVPKPLPTNLMSFE*

BS05743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PF 665 CG5522-PF 1..665 1..665 3525 100 Plus
CG5522-PC 665 CG5522-PC 1..665 1..665 3525 100 Plus
CG5522-PD 665 CG5522-PD 1..665 1..665 3525 100 Plus
CG5522-PB 702 CG5522-PB 1..702 1..665 3471 94.6 Plus
CG5522-PE 702 CG5522-PE 1..702 1..665 3471 94.6 Plus