Clone Sequence Records
BS05743.3prime Sequence
928 bp (816 high quality bases) assembled on 2005-12-03
> BS05743.3prime
ATGGTCTAGAAAGCTTTTATTCAAAGGACATTAGGTTGGTGGGCAGAGGT
TTGGGCACTCGCATGGTGGCCAATTTGCAAATGGCATTCGACCAGAGATG
CGTCATCTGGGGACTGTCCGTCCGGAAGCGATAGACGGTGCCCAGAGTTC
GGTGGCACAGTTCGAAGGTGTTCTTGTGCTTGGTGTTATCGCTCACGTGG
GCATACCATCCATCCAATGGACACACTTTGCACGGTTCCCGCTTAAAGTC
GTTGCGTTCGCTTCCTTTAAAGGATTTGGGTGGGAAATACACCAGCGAGT
TGGCCCAAATCTGTAGCCAGTATCGTTGCCAAGATGCCACCGCTGGCTTC
CTTCCCTCCTTTTGAACTGTTTTACGCCGGACACATCCGTGCATGGCGGC
TGCTGCCTCTGGTGACATCAAATCGCAATCGCTGCCGGTAAAATCACACA
TAATTCCCTCTGCACTTTCCAACGATGTTAGATCTGCTTGGGATAGGGCA
TCGCTGTGCTCCAAGACCGAATCATCTAGCAGGTGGTGACGAGGCTGCAC
TTGACTCGGATCAAGTTCCAGGTGCAGGTGGTGAGGATGTCCATCGCTGT
GGTTGTGCGTTGCAATCTTGCCAAAAATGTTGGTGCCCAGACTGCGACAC
TTGCGATGGCCTGGCACAAATTTTGTGCCGCTTGCCATTCGCATGGAGCC
AATGGTTTTGGCCGGCGAGAGATTTAGGCATCCAAGGGCCGGAGTAACTA
CTTCCACATTGAAGGACTCTTTTGAGCTGCAGGACGAAGAACTGGGTCCA
GAGGGCGACGCAGGTTCCAGGTTTAGAGAGCGCTTGTACTGATCCTCCTC
GAATATGTTTCTGCACTCCTCTATATACCTTATCGAAGTCAAATACTTTT
GTGTCGCCTCATGCTTCTGCAAATGCTT
BS05743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PD | 1998 | CG5522-RD | 1156..1998 | 859..17 | 4215 | 100 | Minus |
CG5522-PC | 1998 | CG5522-RC | 1156..1998 | 859..17 | 4215 | 100 | Minus |
CG5522-PF | 1998 | CG5522-RF | 1156..1998 | 859..17 | 4215 | 100 | Minus |
CG5522-PA | 2109 | CG5522-RA | 1497..2109 | 629..17 | 3065 | 100 | Minus |
CG5522-PE | 2109 | CG5522-RE | 1497..2109 | 629..17 | 3065 | 100 | Minus |
CG5522-PB | 2109 | CG5522-RB | 1497..2109 | 629..17 | 3065 | 100 | Minus |
CG5522-PA | 2109 | CG5522-RA | 1156..1385 | 859..630 | 1150 | 100 | Minus |
CG5522-PE | 2109 | CG5522-RE | 1156..1385 | 859..630 | 1150 | 100 | Minus |
CG5522-PB | 2109 | CG5522-RB | 1156..1385 | 859..630 | 1150 | 100 | Minus |
CG5522-PD | 1998 | CG5522-RD | 1087..1150 | 928..865 | 320 | 100 | Minus |
CG5522-PC | 1998 | CG5522-RC | 1087..1150 | 928..865 | 320 | 100 | Minus |
CG5522-PF | 1998 | CG5522-RF | 1087..1150 | 928..865 | 320 | 100 | Minus |
CG5522-PA | 2109 | CG5522-RA | 1087..1150 | 928..865 | 320 | 100 | Minus |
CG5522-PE | 2109 | CG5522-RE | 1087..1150 | 928..865 | 320 | 100 | Minus |
CG5522-PB | 2109 | CG5522-RB | 1087..1150 | 928..865 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 1446..2357 | 928..17 | 4515 | 99.8 | Minus |
CG5522-RC | 3516 | CG5522-RC | 1484..2395 | 928..17 | 4515 | 99.8 | Minus |
CG5522-RD | 2358 | CG5522-RD | 1345..2256 | 928..17 | 4515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16790739..16791351 | 629..17 | 3065 | 100 | Minus |
2R | 25286936 | 2R | 16789712..16789915 | 833..630 | 1020 | 100 | Minus |
2R | 25286936 | 2R | 16789541..16789636 | 928..833 | 405 | 94.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:28:28 has no hits.
BS05743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:20:59 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PF | 1087..1998 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:52:58 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PC | 1087..1998 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:48 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 1345..2258 | 13..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:44 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 1345..2258 | 13..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:44 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16789541..16789635 | 834..928 | 97 | -> | Minus |
2R | 16789712..16789915 | 630..833 | 100 | -> | Minus |
2R | 16790739..16791353 | 13..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:48 Download gff for
BS05743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12677046..12677140 | 834..928 | 97 | -> | Minus |
arm_2R | 12677217..12677420 | 630..833 | 100 | -> | Minus |
arm_2R | 12678244..12678858 | 13..629 | 99 | | Minus |
BS05743.5prime Sequence
907 bp (840 high quality bases) assembled on 2005-12-02
> BS05743.5prime
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAG
BS05743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PA | 2109 | CG5522-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5522-PD | 1998 | CG5522-RD | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5522-PC | 1998 | CG5522-RC | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5522-PE | 2109 | CG5522-RE | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5522-PB | 2109 | CG5522-RB | 1..891 | 17..907 | 4455 | 100 | Plus |
CG5522-PF | 1998 | CG5522-RF | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 359..1250 | 16..907 | 4460 | 100 | Plus |
CG5522-RB | 3589 | CG5522-RB | 359..1250 | 16..907 | 4460 | 100 | Plus |
CG5522-RE | 3627 | CG5522-RE | 397..1288 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16788324..16788666 | 75..417 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 16788791..16789121 | 418..748 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 16789182..16789345 | 744..907 | 820 | 100 | Plus |
2R | 25286936 | 2R | 16788200..16788260 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:05:05 has no hits.
BS05743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:00 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PD | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:00 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PF | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:58 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RE | 397..1288 | 16..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:31 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RE | 397..1288 | 16..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:31 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16788200..16788260 | 16..76 | 100 | -> | Plus |
2R | 16788326..16788666 | 77..417 | 100 | -> | Plus |
2R | 16788791..16789118 | 418..745 | 100 | -> | Plus |
2R | 16789184..16789345 | 746..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:58 Download gff for
BS05743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12675831..12676171 | 77..417 | 100 | -> | Plus |
arm_2R | 12675705..12675765 | 16..76 | 100 | -> | Plus |
arm_2R | 12676296..12676623 | 418..745 | 100 | -> | Plus |
arm_2R | 12676689..12676850 | 746..907 | 100 | | Plus |
BS05743.complete Sequence
2030 bp assembled on 2010-05-10
GenBank Submission: KX794911
> BS05743.complete
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAGGACAACTGGGCGAATCTGCGCTCCTACCTCGAGAGCCTCCGCC
TGCCCTGCATCCCCTATCTGGGTCTCTTTCTCACCGATCTGATCTACATC
GATTTGGCCCACCCACATAAGGGCGGATTGGAGCCAGAGCAGCGTCGCAA
TAAGATGAACAATATATTGCGTGTAATTTCGAACTATCAACAGTCGAACT
ATAAGCATTTGCAGAAGCATGAGGCGACACAAAAGTATTTGACTTCGATA
AGGTATATAGAGGAGTTGCAGAACATATTCGAGGAGGATCAGTACAAGCG
CTCTCTAAACCTGGAACCTGCGTCGCCCTCTGGACCCAGTTCTTCGTCCT
GCAGCTCAAAAGAGTCCTTCAATGTGGAAGTAGTTACTCCGGCCCTTGGA
TGCCTAAATCTCTCGCCGGCCAAAACCATTGGCTCCATGCGAATGGCAAG
CGGCACAAAATTTGTGCCAGGCCATCGCAAGTGTCGCAGTCTGGGCACCA
ACATTTTTGGCAAGATTGCAACGCACAACCACAGCGATGGACATCCTCAC
CACCTGCACCTGGAACTTGATCCGAGTCAAGTGCAGCCTCGTCACCACCT
GCTAGATGATTCGGTCTTGGAGCACAGCGATGCCCTATCCCAAGCAGATC
TAACATCGTTGGAAAGTGCAGAGGGAATTATGTGTGATTTTACCGGCAGC
GATTGCGATTTGATGTCACCAGAGGCAGCAGCCGCCATGCACGGATGTGT
CCGGCGTAAAACAGTTCAAAAGGAGGGAAGGAAGCCAGCGGTGGCATCTT
GGCAACGATACTGGCTACAGATTTGGGCCAACTCGCTGGTGTATTTCCCA
CCCAAATCCTTTAAAGGAAGCGAACGCAACGACTTTAAGCGGGAACCGTG
CAAAGTGTGTCCATTGGATGGATGGTATGCCCACGTGAGCGATAACACCA
AGCACAAGAACACCTTCGAACTGTGCCACCGAACTCTGGGCACCGTCTAT
CGCTTCCGGACGGACAGTCCCCAGATGACGCATCTCTGGTCGAATGCCAT
TTGCAAATTGGCCACCATGCGAGTGCCCAAACCTCTGCCCACCAACCTAA
TGTCCTTTGAATAAAAGCTTTCTAGACCAT
BS05743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 1998 | CG5522-PF | 1..1998 | 17..2014 | 9990 | 100 | Plus |
CG5522-RC | 1998 | CG5522-PC | 1..1998 | 17..2014 | 9990 | 100 | Plus |
CG5522-RD | 1998 | CG5522-PD | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 359..2357 | 16..2014 | 9995 | 100 | Plus |
CG5522-RC | 3516 | CG5522-RC | 397..2395 | 16..2014 | 9995 | 100 | Plus |
CG5522-RD | 2358 | CG5522-RD | 258..2256 | 16..2014 | 9995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16790739..16791351 | 1402..2014 | 3065 | 100 | Plus |
2R | 25286936 | 2R | 16789182..16789636 | 744..1198 | 2275 | 100 | Plus |
2R | 25286936 | 2R | 16788324..16788666 | 75..417 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 16788791..16789121 | 418..748 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 16789712..16789915 | 1198..1401 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 16788200..16788260 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:53 has no hits.
BS05743.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:46 Download gff for
BS05743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RF | 360..2355 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:31 Download gff for
BS05743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 259..2254 | 17..2012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:01 Download gff for
BS05743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 259..2254 | 17..2012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:01 Download gff for
BS05743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16788201..16788260 | 17..76 | 100 | -> | Plus |
2R | 16788326..16788666 | 77..417 | 100 | -> | Plus |
2R | 16788791..16789118 | 418..745 | 100 | -> | Plus |
2R | 16789184..16789635 | 746..1197 | 100 | -> | Plus |
2R | 16789712..16789915 | 1198..1401 | 100 | -> | Plus |
2R | 16790739..16791349 | 1402..2012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:31 Download gff for
BS05743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12675706..12675765 | 17..76 | 100 | -> | Plus |
arm_2R | 12675831..12676171 | 77..417 | 100 | -> | Plus |
arm_2R | 12676296..12676623 | 418..745 | 100 | -> | Plus |
arm_2R | 12676689..12677140 | 746..1197 | 100 | -> | Plus |
arm_2R | 12677217..12677420 | 1198..1401 | 100 | -> | Plus |
arm_2R | 12678244..12678854 | 1402..2012 | 100 | | Plus |
BS05743.pep Sequence
Translation from 16 to 2013
> BS05743.pep
MMRYSEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPP
PSQQQQQPTRVSKQRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQAS
KTLNIKSTRRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHA
SIKQLDAVILSALRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDK
HVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHE
LNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNW
ANLRSYLESLRLPCIPYLGLFLTDLIYIDLAHPHKGGLEPEQRRNKMNNI
LRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLE
PASPSGPSSSSCSSKESFNVEVVTPALGCLNLSPAKTIGSMRMASGTKFV
PGHRKCRSLGTNIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSV
LEHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAAMHGCVRRKTV
QKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPL
DGWYAHVSDNTKHKNTFELCHRTLGTVYRFRTDSPQMTHLWSNAICKLAT
MRVPKPLPTNLMSFE*
BS05743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PF | 665 | CG5522-PF | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PC | 665 | CG5522-PC | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PD | 665 | CG5522-PD | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PB | 702 | CG5522-PB | 1..702 | 1..665 | 3471 | 94.6 | Plus |
CG5522-PE | 702 | CG5522-PE | 1..702 | 1..665 | 3471 | 94.6 | Plus |