Clone Sequence Records
BS05757.3prime Sequence
891 bp (838 high quality bases) assembled on 2005-12-03
> BS05757.3prime
ATGGTCTAGAAAGCTTTCAAGCGGAAGCTGTGAGCAGGGCGGCATGGTAG
GCGATGTGTTCGGCGACGAACGTGGCGATGTAGAAGTAGCTGTGATCGTA
TCCCTCGCGCTGCTTGAAGATGGTCTGGATGTGATCATTGCCATCTGCGG
CAGCCAGCAGGTTCTCCGGCAGCAGCTGCTTGCCGGCCAGGAAGTTGTCT
GCTGCACCTTGGTCGATGAAGAGCTCCTGCGGAGTGCTCTCGTACTGCGA
CACCAGATGCGTGGCATCCCACAGGGCCCAGTCATCCGGATTGGAGCCCA
GATAGCCGGCAAAGGCCTTCTTGCCCCACGGGCACTCGGTGGGATTGGCA
ATCGGCGCAAAAGCGGACACCGACTGGTACAGCCCGGGATTCTTAAGCGC
GCAGATCAGGGCTCCGTGGCCGCCCATACTGTGGCCGAATATACCGCGTT
TACCGGGAACCACGGGCAGATTGGCATTGACCACATCCACCAGCTCCTGG
GTCACATAGCTGTACATCTTGTAGTGCTTCGACCACGGCTCCTCCTTTGC
ATCCACATAGAATCCAGCCCCGCTTCCAAAGTCGTATGCATCATCTTGGC
CGGCAATTTCCACGCCCCTGGGCGAAGTGTCCGGATTGACGACGATCAGG
TTGTGGCGGGCGGCGTGCTGCTGGAATCCGCTCTTCTGGATGAAGTTCTC
ATGCGTGCAGGTCAGTCCGCTGAGGAAGAACAGCACCGGACACGGTTTAC
CCTCCAAAGCGGCCGGCGGCAGGAAGACGCCAAAGGTCATGTCGCACTTC
AAGGTGTCCGAGCGATGGCGATACACGCGTTGCTCGCCCTCGAAGCACTT
ATTTGCGGACAGCTGTTCGAGCGTCATGTCGACTGATAACT
BS05757.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-PB | 993 | CG4390-RB | 131..993 | 879..17 | 4315 | 100 | Minus |
CG4390-PA | 861 | CG4390-RA | 1..861 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-RA | 1006 | CG4390-RA | 51..913 | 879..17 | 4315 | 100 | Minus |
CG4390-RB | 1141 | CG4390-RB | 186..1048 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20056511..20057373 | 17..879 | 4315 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:20:53 has no hits.
BS05757.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:27 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-PB | 128..993 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:38 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-PB | 128..993 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:35 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 198..1071 | 9..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:41 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 183..1056 | 9..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:41 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20056503..20057377 | 9..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:35 Download gff for
BS05757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15882225..15883099 | 9..885 | 99 | | Plus |
BS05757.5prime Sequence
831 bp (830 high quality bases) assembled on 2005-12-02
> BS05757.5prime
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGC
BS05757.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-PB | 993 | CG4390-RB | 131..947 | 15..831 | 4085 | 100 | Plus |
CG4390-PA | 861 | CG4390-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-RA | 1006 | CG4390-RA | 51..867 | 15..831 | 4085 | 100 | Plus |
CG4390-RB | 1141 | CG4390-RB | 186..1002 | 15..831 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20056557..20057373 | 831..15 | 4085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:08:15 has no hits.
BS05757.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:28 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-PB | 128..947 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:40 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-PB | 128..947 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:48 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 198..1017 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:09 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 183..1002 | 10..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:09 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20056557..20057377 | 9..831 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:48 Download gff for
BS05757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15882279..15883099 | 9..831 | 99 | | Minus |
BS05757.complete Sequence
893 bp (893 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635231
> BS05757.complete
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGCCGAACACATCGCCTACCAT
GCCGCCCTGCTCACAGCTTCCGCTTGAAAGCTTTCTAGACCAT
BS05757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-RB | 993 | CG4390-PB | 131..993 | 15..877 | 4315 | 100 | Plus |
CG4390-RA | 861 | CG4390-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-RA | 1006 | CG4390-RA | 51..913 | 15..877 | 4315 | 100 | Plus |
CG4390-RB | 1141 | CG4390-RB | 186..1048 | 15..877 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20056511..20057373 | 877..15 | 4315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:59 has no hits.
BS05757.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:08 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 128..993 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:05 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RA | 72..946 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:24 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 203..1062 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:08 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RA | 72..946 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:41 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4390-RB | 188..1047 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:41 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20056512..20057371 | 17..876 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:24 Download gff for
BS05757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15882234..15883093 | 17..876 | 100 | | Minus |
BS05757.pep Sequence
Translation from 16 to 876
> BS05757.pep
MTLEQLSANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGKPCPVLF
FLSGLTCTHENFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDF
GSGAGFYVDAKEEPWSKHYKMYSYVTQELVDVVNANLPVVPGKRGIFGHS
MGGHGALICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSNPDDW
ALWDATHLVSQYESTPQELFIDQGAADNFLAGKQLLPENLLAAADGNDHI
QTIFKQREGYDHSYFYIATFVAEHIAYHAALLTASA*
BS05757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4390-PA | 286 | CG4390-PA | 1..286 | 1..286 | 1541 | 100 | Plus |
CG4390-PB | 330 | CG4390-PB | 45..330 | 1..286 | 1541 | 100 | Plus |