Clone BS05757 Report

Search the DGRC for BS05757

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG4390-RA
Protein status:BS05757.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05757.3prime Sequence

891 bp (838 high quality bases) assembled on 2005-12-03

> BS05757.3prime
ATGGTCTAGAAAGCTTTCAAGCGGAAGCTGTGAGCAGGGCGGCATGGTAG
GCGATGTGTTCGGCGACGAACGTGGCGATGTAGAAGTAGCTGTGATCGTA
TCCCTCGCGCTGCTTGAAGATGGTCTGGATGTGATCATTGCCATCTGCGG
CAGCCAGCAGGTTCTCCGGCAGCAGCTGCTTGCCGGCCAGGAAGTTGTCT
GCTGCACCTTGGTCGATGAAGAGCTCCTGCGGAGTGCTCTCGTACTGCGA
CACCAGATGCGTGGCATCCCACAGGGCCCAGTCATCCGGATTGGAGCCCA
GATAGCCGGCAAAGGCCTTCTTGCCCCACGGGCACTCGGTGGGATTGGCA
ATCGGCGCAAAAGCGGACACCGACTGGTACAGCCCGGGATTCTTAAGCGC
GCAGATCAGGGCTCCGTGGCCGCCCATACTGTGGCCGAATATACCGCGTT
TACCGGGAACCACGGGCAGATTGGCATTGACCACATCCACCAGCTCCTGG
GTCACATAGCTGTACATCTTGTAGTGCTTCGACCACGGCTCCTCCTTTGC
ATCCACATAGAATCCAGCCCCGCTTCCAAAGTCGTATGCATCATCTTGGC
CGGCAATTTCCACGCCCCTGGGCGAAGTGTCCGGATTGACGACGATCAGG
TTGTGGCGGGCGGCGTGCTGCTGGAATCCGCTCTTCTGGATGAAGTTCTC
ATGCGTGCAGGTCAGTCCGCTGAGGAAGAACAGCACCGGACACGGTTTAC
CCTCCAAAGCGGCCGGCGGCAGGAAGACGCCAAAGGTCATGTCGCACTTC
AAGGTGTCCGAGCGATGGCGATACACGCGTTGCTCGCCCTCGAAGCACTT
ATTTGCGGACAGCTGTTCGAGCGTCATGTCGACTGATAACT

BS05757.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-PB 993 CG4390-RB 131..993 879..17 4315 100 Minus
CG4390-PA 861 CG4390-RA 1..861 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RA 1006 CG4390-RA 51..913 879..17 4315 100 Minus
CG4390-RB 1141 CG4390-RB 186..1048 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20056511..20057373 17..879 4315 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:20:53 has no hits.

BS05757.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:27 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 128..993 17..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:38 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 128..993 17..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:35 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 198..1071 9..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:41 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 183..1056 9..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:41 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20056503..20057377 9..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:35 Download gff for BS05757.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15882225..15883099 9..885 99   Plus

BS05757.5prime Sequence

831 bp (830 high quality bases) assembled on 2005-12-02

> BS05757.5prime
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGC

BS05757.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-PB 993 CG4390-RB 131..947 15..831 4085 100 Plus
CG4390-PA 861 CG4390-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RA 1006 CG4390-RA 51..867 15..831 4085 100 Plus
CG4390-RB 1141 CG4390-RB 186..1002 15..831 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20056557..20057373 831..15 4085 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:08:15 has no hits.

BS05757.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:28 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 128..947 10..831 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:53:40 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-PB 128..947 10..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:48 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 198..1017 10..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:09 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 183..1002 10..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:09 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20056557..20057377 9..831 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:48 Download gff for BS05757.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15882279..15883099 9..831 99   Minus

BS05757.complete Sequence

893 bp (893 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635231

> BS05757.complete
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGCCGAACACATCGCCTACCAT
GCCGCCCTGCTCACAGCTTCCGCTTGAAAGCTTTCTAGACCAT

BS05757.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RB 993 CG4390-PB 131..993 15..877 4315 100 Plus
CG4390-RA 861 CG4390-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-RA 1006 CG4390-RA 51..913 15..877 4315 100 Plus
CG4390-RB 1141 CG4390-RB 186..1048 15..877 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20056511..20057373 877..15 4315 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:43:59 has no hits.

BS05757.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:24:08 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 128..993 10..877 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:06:05 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4390-RA 72..946 9..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:24 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 203..1062 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:24:08 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4390-RA 72..946 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:41 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
CG4390-RB 188..1047 17..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:41 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20056512..20057371 17..876 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:24 Download gff for BS05757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15882234..15883093 17..876 100   Minus

BS05757.pep Sequence

Translation from 16 to 876

> BS05757.pep
MTLEQLSANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGKPCPVLF
FLSGLTCTHENFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDF
GSGAGFYVDAKEEPWSKHYKMYSYVTQELVDVVNANLPVVPGKRGIFGHS
MGGHGALICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSNPDDW
ALWDATHLVSQYESTPQELFIDQGAADNFLAGKQLLPENLLAAADGNDHI
QTIFKQREGYDHSYFYIATFVAEHIAYHAALLTASA*

BS05757.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4390-PA 286 CG4390-PA 1..286 1..286 1541 100 Plus
CG4390-PB 330 CG4390-PB 45..330 1..286 1541 100 Plus