Clone Sequence Records
BS05767.3prime Sequence
813 bp (812 high quality bases) assembled on 2005-12-03
> BS05767.3prime
ATGGTCTAGAAAGCTTTTAGGCCAATACCTTCAGCTTGCAGAGCAGGTAG
TACAGAAAACAAAACAGCCACAGGCTGAAGTCGACGTGGCTCCTGCCCGC
CGCCGCGGACGTGGCCACCGTGGTCAGGTTCTTGCCGTATCCCTCGAAGG
ACACCACGCACTGGTAGGCATCGGGATCGTCGTCGGTGTCGTAGGCCGCC
ACCACGGCGCTGCCATCGAAGTATCCCTCCTCGTTCTCGTACACCATGGG
CTCCCGCTTCACCACGTCCATGTCGTTGGATATTATCGTGATGGTGGGCC
TGGGATACACGTTCGTCACGGTGCAGTTCAGCTGCGTCTCATTGTGGATC
GTCTTGTGGGACAGCTCCAGGGTGTAGTTCCTCAGGTCTATGACCTGAAC
CCTCTGGTGGCTGGAGAAGGTGTTCAGCGAGGTCTGCACCACGCACTTGT
AGTCGCCGGTGGTGGCGATCGTGGGGTTGATCAAAGCCAGCGAGCTGTAC
TGCTTGCTCGGCTCCGTGGAGCTCTCATAGGTGCTGTCAATCTCGTTCCT
GAACTCGGGGATGGCATATGGAGGTGTTCCGAAGATCCACTGGTATATGG
ACTTGTCGTCTCTGTACCATTTGACGGTGATGAACTTCGGGCTCTCCTCC
ACCTCGTAGTCGCAGTCCAGGATCGTGGGCTCCATCTCCTCGTTCTGAAG
GACTATAATCTTGTCCTCGGACTCATCCCTCGTGGGATAGCATAGCGCAT
CTCTGTGGAGCAGTCCGATGGCCAGAATGGCGATCAGCAGGGTATCCATG
TCGACTGATAACT
BS05767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 783 | CG5597-RA | 1..783 | 799..17 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..889 | 799..16 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 559..282 | 1390 | 100 | Minus |
2R | 25286936 | 2R | 23888481..23888746 | 281..16 | 1330 | 100 | Minus |
2R | 25286936 | 2R | 23887872..23888064 | 752..560 | 965 | 100 | Minus |
2R | 25286936 | 2R | 23887078..23887126 | 799..751 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:16:20 has no hits.
BS05767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:47 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:05 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:47:17 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..889 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:09 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..889 | 16..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:09 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23888125..23888402 | 282..559 | 100 | -> | Minus |
2R | 23888481..23888746 | 16..281 | 100 | | Minus |
2R | 23887074..23887126 | 751..803 | 96 | -> | Minus |
2R | 23887874..23888064 | 560..750 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:47:17 Download gff for
BS05767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19774597..19774649 | 751..803 | 96 | -> | Minus |
arm_2R | 19775397..19775587 | 560..750 | 100 | -> | Minus |
arm_2R | 19775648..19775925 | 282..559 | 100 | -> | Minus |
arm_2R | 19776004..19776269 | 16..281 | 100 | | Minus |
BS05767.5prime Sequence
813 bp (774 high quality bases) assembled on 2005-12-02
> BS05767.5prime
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGNCAGCTGAAGGTATTGGCCTAAA
AGCTTTCTAGACC
BS05767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 783 | CG5597-RA | 1..783 | 17..799 | 3871 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..889 | 17..800 | 3894 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 257..534 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 23888481..23888746 | 535..800 | 1304 | 99.2 | Plus |
2R | 25286936 | 2R | 23887872..23888064 | 64..256 | 965 | 100 | Plus |
2R | 25286936 | 2R | 23887078..23887126 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:31:11 has no hits.
BS05767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:21:48 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:06 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:58 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..889 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:55:45 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..889 | 13..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:55:45 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23888481..23888746 | 535..800 | 99 | | Plus |
2R | 23887074..23887126 | 13..65 | 96 | -> | Plus |
2R | 23887874..23888064 | 66..256 | 100 | -> | Plus |
2R | 23888125..23888402 | 257..534 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:58 Download gff for
BS05767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19774597..19774649 | 13..65 | 96 | -> | Plus |
arm_2R | 19775397..19775587 | 66..256 | 100 | -> | Plus |
arm_2R | 19775648..19775925 | 257..534 | 100 | -> | Plus |
arm_2R | 19776004..19776269 | 535..800 | 99 | | Plus |
BS05767.complete Sequence
815 bp (815 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635232
> BS05767.complete
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGCAAGCTGAAGGTATTGGCCTAAA
AGCTTTCTAGACCAT
BS05767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 783 | CG5597-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..889 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 257..534 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 23888481..23888746 | 535..800 | 1330 | 100 | Plus |
2R | 25286936 | 2R | 23887872..23888064 | 64..256 | 965 | 100 | Plus |
2R | 25286936 | 2R | 23887078..23887126 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:26 has no hits.
BS05767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:58 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:54 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 101..888 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:19 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 106..886 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:59 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 101..888 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:36 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 106..886 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:36 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23887078..23887126 | 17..65 | 100 | -> | Plus |
2R | 23887874..23888064 | 66..256 | 100 | -> | Plus |
2R | 23888125..23888402 | 257..534 | 100 | -> | Plus |
2R | 23888481..23888743 | 535..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:19 Download gff for
BS05767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19774601..19774649 | 17..65 | 100 | -> | Plus |
arm_2R | 19775397..19775587 | 66..256 | 100 | -> | Plus |
arm_2R | 19775648..19775925 | 257..534 | 100 | -> | Plus |
arm_2R | 19776004..19776266 | 535..797 | 100 | | Plus |
BS05767.pep Sequence
Translation from 16 to 798
> BS05767.pep
MDTLLIAILAIGLLHRDALCYPTRDESEDKIIVLQNEEMEPTILDCDYEV
EESPKFITVKWYRDDKSIYQWIFGTPPYAIPEFRNEIDSTYESSTEPSKQ
YSSLALINPTIATTGDYKCVVQTSLNTFSSHQRVQVIDLRNYTLELSHKT
IHNETQLNCTVTNVYPRPTITIISNDMDVVKREPMVYENEEGYFDGSAVV
AAYDTDDDPDAYQCVVSFEGYGKNLTTVATSAAAGRSHVDFSLWLFCFLY
YLLCKLKVLA*
BS05767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 260 | CG5597-PA | 1..260 | 1..260 | 1373 | 100 | Plus |
CG13532-PA | 263 | CG13532-PA | 39..177 | 33..173 | 168 | 27.6 | Plus |