Clone Sequence Records
BS05778.3prime Sequence
896 bp (825 high quality bases) assembled on 2005-12-03
> BS05778.3prime
ATGGTCTAGAAAGCTTTTAAGGGTAGTACGTCTTCTTGAACCTGTTCTTA
TTCTTAGGGACGTCTGGTCGGACCGCACGTGGAACATACTCCTTGTCATG
TGTGTCCAGCGTTCGCTGCCAAGGATTGATGTCCAGCTCGAAGAAGCGTC
TCTTAGCCTCCATGGCACGATTGTTGTTATCGATCTTGTATAGCTTCTCC
CACAGGTAGATTTCGGGCAGCTCCAAGTGTCGCGGTCGGTTTGATGCCAA
ATATTTGAAGGTCTTATTGATAAAGTCACGCTGTTCGGCGTTCTCATAGG
CGGAAACGTCGGAGGCAACATACGGCTGCTGCTCCCCAATGCTCCGCTGA
ATCGATGGCGCATTGGCATAGAAATTGAGCAGGTGCCGCAGTGCGTTATC
GTTGAAATCAACGCACTTGCCGCTTGCCGAAATCTCGGCGTACAGTGGAA
GTGGCTTTGTACCGCGACAGAAGTTGACACGGGGATTTTCCGCCACGTTT
GTGCCGTGCAGCAGCAGCGTATTAAGCTGATACTCATAAAAGCTCCATTC
CCTGCCGTTCGTGATCACAGTTTGAGTGTTCATGGGATAGGTCAGTTCGT
TGTAGGTGTTGAAGCCATTGTAGTTCGCCTGGGCCAAAAGCCAGGCGTAT
GACGATTTAATCGCCAGCGAATGCAATGCCTCCAGCTGATCCTGCTCGCC
GAACGATTTCGGACGGATCTGCAGGTGTGCACGCGATTGAAATGAGAGCA
GGCCGAAGTTATTCTCATTTCCTTTGGGCCAATAGCCTGGCACATTGGTG
GCGTGCTGATGCTTGGTGCTGTAGCCGAGGGTTCGCGGGTCGTGCTTGAA
ACGGGGCAGCTGTTTGCTCAGCTCGAGGTTTCGCTTTCCGCTTCCG
BS05778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8470-PA | 1674 | mRpS30-RA | 810..1674 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 919..1800 | 896..16 | 4385 | 99.9 | Minus |
| mRpS30-RA | 1829 | CG8470-RA | 919..1800 | 896..16 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15787129..15788010 | 896..16 | 4360 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:29:08 has no hits.
BS05778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:09 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8470-PA | 794..1674 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:37 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8470-PA | 794..1674 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:23 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 919..1800 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:07 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 919..1800 | 16..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:07 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15787129..15788010 | 16..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:23 Download gff for
BS05778.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15681162..15682043 | 16..896 | 99 | | Minus |
BS05778.5prime Sequence
912 bp (802 high quality bases) assembled on 2005-12-03
> BS05778.5prime
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAAGCGAAAACCTCGAGCTGAGCAACAGCTGC
CCTGTTTCAGCACGACCCGCGAACCCTCGGCTACAGCACCAAGCATCAGC
ACGCCACCAATG
BS05778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8470-PA | 1674 | mRpS30-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG8470-PA | 1674 | mRpS30-RA | 845..898 | 859..912 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 125..1023 | 16..912 | 4430 | 99.7 | Plus |
| mRpS30-RA | 1829 | CG8470-RA | 125..1023 | 16..912 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15786171..15786630 | 16..475 | 2300 | 100 | Plus |
| X | 23542271 | X | 15786794..15787233 | 475..912 | 2085 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:18:55 has no hits.
BS05778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:10 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8470-PA | 1..898 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:38 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8470-PA | 1..898 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:43 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 114..1023 | 3..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:36 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 114..1023 | 3..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:36 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15786160..15786629 | 3..474 | 98 | -> | Plus |
| X | 15786794..15787233 | 475..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:43 Download gff for
BS05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15680193..15680662 | 3..474 | 98 | -> | Plus |
| arm_X | 15680827..15681266 | 475..912 | 99 | | Plus |
BS05778.complete Sequence
1706 bp assembled on 2007-10-17
GenBank Submission: FJ638786
> BS05778.complete
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAAGCGAAAACCTCGAGCTGAGCAAACAGCTG
CCCCGTTTCAAGCACGACCCGCGAACCCTCGGCTACAGCACCAAGCATCA
GCACGCCACCAATGTGCCAGGCTATTGGCCCAAAGGAAATGAGAATAACT
TCGGCCTGCTCTCATTTCAATCGCGTGCACACCTGCAGATCCGTCCGAAA
TCGTTCGGCGAGCAGGATCAGCTGGAGGCATTGCATTCGCTGGCGATTAA
ATCGTCATACGCCTGGCTTTTGGCCCAGGCGAACTACAATGGCTTCAACA
CCTACAACGAACTGACCTATCCCATGAACACTCAAACTGTGATCACGAAC
GGCAGGGAATGGAGCTTTTATGAGTATCAGCTTAATACGCTGCTGCTGCA
CGGCACAAACGTGGCGGAAAATCCCCGTGTCAACTTCTGTCGCGGTACAA
AGCCACTTCCACTGTACGCCGAGATTTCGGCAAGCGGCAAGTGCGTTGAT
TTCAACGATAACGCACTGCGGCACCTGCTCAATTTCTATGCCAATGCGCC
ATCGATTCAGCGGAGCATTGGGGAGCAGCAGCCGTATGTTGCCTCCGACG
TTTCCGCCTATGAGAACGCCGAACAGCGTGACTTTATCAATAAGACCTTC
AAATATTTGGCATCAAACCGACCGCGACACTTGGAGCTGCCCGAAATCTA
CCTGTGGGAGAAGCTATACAAGATCGATAACAACAATCGTGCCATGGAGG
CTAAGAGACGCTTCTTCGAGCTGGACATCAATCCTTGGCAGCGAACGCTG
GACACACATGACAAGGAGTATGTTCCACGTGCGGTCCGACCAGACGTCCC
TAAGAATAAGAACAGGTTCAAGAAGACGTACTACCCTTAAAAGCTTTCTA
GACCAT
BS05778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 1674 | CG8470-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| mRpS30-RA | 1674 | CG8470-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 125..1800 | 16..1691 | 8380 | 100 | Plus |
| mRpS30-RA | 1829 | CG8470-RA | 125..1800 | 16..1691 | 8380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15786794..15788010 | 475..1691 | 6085 | 100 | Plus |
| X | 23542271 | X | 15786171..15786630 | 16..475 | 2300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:32:35 has no hits.
BS05778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:03 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 1..1674 | 17..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:14 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 90..1776 | 3..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:33 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 131..1797 | 22..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:45 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 107..1773 | 22..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:52 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 131..1797 | 22..1688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:52 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15786177..15786629 | 22..474 | 100 | -> | Plus |
| X | 15786794..15788007 | 475..1688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:33 Download gff for
BS05778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15680210..15680662 | 22..474 | 100 | -> | Plus |
| arm_X | 15680827..15682040 | 475..1688 | 100 | | Plus |
BS05778.pep Sequence
Translation from 16 to 1689
> BS05778.pep
MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD
AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY
TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD
YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD
VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP
YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV
PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW
LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA
ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS
IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL
YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR
FKKTYYP*
BS05778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-PB | 557 | CG8470-PB | 1..557 | 1..557 | 2968 | 100 | Plus |
| mRpS30-PA | 557 | CG8470-PA | 1..557 | 1..557 | 2968 | 100 | Plus |
