Clone BS05780 Report

Search the DGRC for BS05780

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9356-RA
Protein status:BS05780.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05780.3prime Sequence

840 bp (712 high quality bases) assembled on 2005-12-03

> BS05780.3prime
ATGGTCTAGAAAGCTTCTATTGCATTTTATCTAGCTGCTGATTATCGCAG
GCAGGAGTTACTTCGGATGCAGGTGATTGCACGTAGTGGGGTCGCTGGGC
CTGGTCGAAAAGTGCTCGTATGGCTTCATCGGTGGCCATCAGGGGCTGAC
TAATGAATTCCAAGGCCCTAACCGCGTACTTCTCCGCCTCACAAAGTGGA
CTTGTGCTGGCGCTGGACAACTTTAGTGTCTCCTCGGGAATGCCCACGCC
AGTGTGCAGGACCATGCGTTGGAGAATGTTAAGGTTTTCGGCACTTAGGC
TGATTACATCGGTGGCGGGCAGGTTGAGGAAACGAATCTTGGCCAGGAAC
TTCAGTTGCTTAAGCATATCTAGCTGAATTTCGCGGATCTGATGGGTGGC
ATGAAGCAGTTGCTTCGTTGACTCGTTCAATAGCTGATTCTTCTGCGTGA
GATCGGCTTTCCAGCGGGCTAACTCCTCAACCATAACGCTGCTGGCGAGG
AATTTGGACCGCCAGACCTCACACTGGCCGGCCAGGAACTCAATCTGCTC
GGTGTGGGTGGTCAAATTGTTGGCAGTGTCCAATAGAGCTCTGGCCAGCT
GTAGTTTGTCCTCGGTGAGGAGATTAACCCGTGTCTGCAGATCCTCGCCC
ACGGAGGCCACCAGCAGGCTCTTCAGCTCGCTATTCACCTGCGTTTGGAA
CTTATACTGGGCTTGAAAGTAATTGCGTTCATCGCGCATCTTGGCCAGCT
CCTCTTTTAGTGAGTTTACCTCATGGCTACTGGCTGTGTCTGTTTCTTTA
ATATCCGTTGTCTCAGTCTCAATTTCCTGTGTGCGCAGCG

BS05780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PA 1347 CG9356-RA 524..1347 840..17 4045 99.6 Minus
CG9356-PB 1347 CG9356-RB 524..1347 840..17 4045 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 636..1459 840..17 4075 99.6 Minus
CG9356-RA 1578 CG9356-RA 695..1518 840..17 4075 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9402842..9403516 166..840 3330 99.6 Plus
3R 32079331 3R 9402624..9402774 17..167 755 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:30:21 has no hits.

BS05780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:13 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PA 524..1347 17..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:41 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PB 524..1347 17..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:01 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 695..1524 9..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:13 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 695..1524 9..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:13 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9402618..9402773 9..166 97 <- Plus
3R 9402843..9403516 167..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:01 Download gff for BS05780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228340..5228495 9..166 97 <- Plus
arm_3R 5228565..5229238 167..840 99   Plus

BS05780.5prime Sequence

845 bp (804 high quality bases) assembled on 2005-12-03

> BS05780.5prime
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCNACAATTTGACCACCCACACCGAGCAGATTGAGTTCC

BS05780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PA 1347 CG9356-RA 1..829 17..845 4126 99.8 Plus
CG9356-PB 1347 CG9356-RB 1..829 17..845 4126 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 113..941 17..845 4134 99.9 Plus
CG9356-RA 1578 CG9356-RA 172..1000 17..845 4134 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9403211..9404039 845..17 4134 99.9 Minus
Blast to na_te.dros performed on 2015-02-04 03:00:00 has no hits.

BS05780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:14 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:43 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PB 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:07 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 167..1000 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:53 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 167..1000 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:53 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9403211..9404044 9..845 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:07 Download gff for BS05780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228933..5229766 9..845 99   Minus

BS05780.complete Sequence

1379 bp (1379 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635233

> BS05780.complete
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCAACAATTTGACCACCCACACCGAGCAGATTGAGTTCCTGGCC
GGCCAGTGTGAGGTCTGGCGGTCCAAATTCCTCGCCAGCAGCGTTATGGT
TGAGGAGTTAGCCCGCTGGAAAGCCGATCTCACGCAGAAGAATCAGCTAT
TGAACGAGTCAACGAAGCAACTGCTTCATGCCACCCATCAGATCCGCGAA
ATTCAGCTAGATATGCTTAAGCAACTGAAGTTCCTGGCCAAGATTCGTTT
CCTCAACCTGCCCGCCACCGATGTAATCAGCCTAAGTGCCGAAAACCTTA
ACATTCTCCAACGCATGGTCCTGCACACTGGCGTGGGCATTCCCGAGGAG
ACACTAAAGTTGTCCAGCGCCAGCACAAGTCCACTTTGTGAGGCGGAGAA
GTACGCGGTTAGGGCCTTGGAATTCATTAGTCAGCCCCTGATGGCCACCG
ATGAAGCCATACGAGCACTTTTCGACCAGGCCCAGCGACCCCACTACGTG
CAATCACCTGCATCCGAAGTAACTCCTGCCTGCGATAATCAGCAGCTAGA
TAAAATGCAATAGAAGCTTTCTAGACCAT

BS05780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1347 CG9356-PB 1..1347 17..1363 6735 100 Plus
CG9356-RA 1347 CG9356-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 113..1459 17..1363 6735 100 Plus
CG9356-RA 1578 CG9356-RA 172..1518 17..1363 6735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9402842..9404039 1214..17 5990 100 Minus
3R 32079331 3R 9402624..9402774 1363..1213 755 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:56:19 has no hits.

BS05780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:53 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:50 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 93..1450 9..1371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:09 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 172..1518 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:54 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 93..1450 9..1371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:13 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 172..1518 17..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:13 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9402624..9402773 1214..1363 100 <- Minus
3R 9402843..9404039 17..1213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:09 Download gff for BS05780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228346..5228495 1214..1363 100 <- Minus
arm_3R 5228565..5229761 17..1213 100   Minus

BS05780.pep Sequence

Translation from 16 to 1362

> BS05780.pep
MEANESAMPGTDKSQACRTSGDGMEQPENSGAAKTESEIPASADVDNKVK
RPQLSRKDSSVVQEAVMGRKTSTSSGHSSNLPLPGLHTLYRRPENVTRSL
APVVPKGELVQMRPRLVTSADSLPEHKKTKAPKFVPYEPYPGAVNPMISE
PTNKHKIHRDKNNLDIAVLVDQVSTLRTQELETETTDIKETDTASSHEVN
SLKEELAKMRDERNYFQAQYKFQTQVNSELKSLLVASVGEDLQTRVNLLT
EDKLQLARALLDTANNLTTHTEQIEFLAGQCEVWRSKFLASSVMVEELAR
WKADLTQKNQLLNESTKQLLHATHQIREIQLDMLKQLKFLAKIRFLNLPA
TDVISLSAENLNILQRMVLHTGVGIPEETLKLSSASTSPLCEAEKYAVRA
LEFISQPLMATDEAIRALFDQAQRPHYVQSPASEVTPACDNQQLDKMQ*

BS05780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PB 448 CG9356-PB 1..448 1..448 2258 100 Plus
CG9356-PA 448 CG9356-PA 1..448 1..448 2258 100 Plus