Clone Sequence Records
BS05780.3prime Sequence
840 bp (712 high quality bases) assembled on 2005-12-03
> BS05780.3prime
ATGGTCTAGAAAGCTTCTATTGCATTTTATCTAGCTGCTGATTATCGCAG
GCAGGAGTTACTTCGGATGCAGGTGATTGCACGTAGTGGGGTCGCTGGGC
CTGGTCGAAAAGTGCTCGTATGGCTTCATCGGTGGCCATCAGGGGCTGAC
TAATGAATTCCAAGGCCCTAACCGCGTACTTCTCCGCCTCACAAAGTGGA
CTTGTGCTGGCGCTGGACAACTTTAGTGTCTCCTCGGGAATGCCCACGCC
AGTGTGCAGGACCATGCGTTGGAGAATGTTAAGGTTTTCGGCACTTAGGC
TGATTACATCGGTGGCGGGCAGGTTGAGGAAACGAATCTTGGCCAGGAAC
TTCAGTTGCTTAAGCATATCTAGCTGAATTTCGCGGATCTGATGGGTGGC
ATGAAGCAGTTGCTTCGTTGACTCGTTCAATAGCTGATTCTTCTGCGTGA
GATCGGCTTTCCAGCGGGCTAACTCCTCAACCATAACGCTGCTGGCGAGG
AATTTGGACCGCCAGACCTCACACTGGCCGGCCAGGAACTCAATCTGCTC
GGTGTGGGTGGTCAAATTGTTGGCAGTGTCCAATAGAGCTCTGGCCAGCT
GTAGTTTGTCCTCGGTGAGGAGATTAACCCGTGTCTGCAGATCCTCGCCC
ACGGAGGCCACCAGCAGGCTCTTCAGCTCGCTATTCACCTGCGTTTGGAA
CTTATACTGGGCTTGAAAGTAATTGCGTTCATCGCGCATCTTGGCCAGCT
CCTCTTTTAGTGAGTTTACCTCATGGCTACTGGCTGTGTCTGTTTCTTTA
ATATCCGTTGTCTCAGTCTCAATTTCCTGTGTGCGCAGCG
BS05780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-PA | 1347 | CG9356-RA | 524..1347 | 840..17 | 4045 | 99.6 | Minus |
CG9356-PB | 1347 | CG9356-RB | 524..1347 | 840..17 | 4045 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-RB | 1519 | CG9356-RB | 636..1459 | 840..17 | 4075 | 99.6 | Minus |
CG9356-RA | 1578 | CG9356-RA | 695..1518 | 840..17 | 4075 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9402842..9403516 | 166..840 | 3330 | 99.6 | Plus |
3R | 32079331 | 3R | 9402624..9402774 | 17..167 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:30:21 has no hits.
BS05780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:13 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-PA | 524..1347 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:41 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-PB | 524..1347 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:01 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 695..1524 | 9..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:13 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 695..1524 | 9..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:13 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9402618..9402773 | 9..166 | 97 | <- | Plus |
3R | 9402843..9403516 | 167..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:01 Download gff for
BS05780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5228340..5228495 | 9..166 | 97 | <- | Plus |
arm_3R | 5228565..5229238 | 167..840 | 99 | | Plus |
BS05780.5prime Sequence
845 bp (804 high quality bases) assembled on 2005-12-03
> BS05780.5prime
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCNACAATTTGACCACCCACACCGAGCAGATTGAGTTCC
BS05780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-PA | 1347 | CG9356-RA | 1..829 | 17..845 | 4126 | 99.8 | Plus |
CG9356-PB | 1347 | CG9356-RB | 1..829 | 17..845 | 4126 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-RB | 1519 | CG9356-RB | 113..941 | 17..845 | 4134 | 99.9 | Plus |
CG9356-RA | 1578 | CG9356-RA | 172..1000 | 17..845 | 4134 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9403211..9404039 | 845..17 | 4134 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:00:00 has no hits.
BS05780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:14 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:43 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-PB | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:07 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 167..1000 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:40:53 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 167..1000 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:40:53 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9403211..9404044 | 9..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:07 Download gff for
BS05780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5228933..5229766 | 9..845 | 99 | | Minus |
BS05780.complete Sequence
1379 bp (1379 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635233
> BS05780.complete
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCAACAATTTGACCACCCACACCGAGCAGATTGAGTTCCTGGCC
GGCCAGTGTGAGGTCTGGCGGTCCAAATTCCTCGCCAGCAGCGTTATGGT
TGAGGAGTTAGCCCGCTGGAAAGCCGATCTCACGCAGAAGAATCAGCTAT
TGAACGAGTCAACGAAGCAACTGCTTCATGCCACCCATCAGATCCGCGAA
ATTCAGCTAGATATGCTTAAGCAACTGAAGTTCCTGGCCAAGATTCGTTT
CCTCAACCTGCCCGCCACCGATGTAATCAGCCTAAGTGCCGAAAACCTTA
ACATTCTCCAACGCATGGTCCTGCACACTGGCGTGGGCATTCCCGAGGAG
ACACTAAAGTTGTCCAGCGCCAGCACAAGTCCACTTTGTGAGGCGGAGAA
GTACGCGGTTAGGGCCTTGGAATTCATTAGTCAGCCCCTGATGGCCACCG
ATGAAGCCATACGAGCACTTTTCGACCAGGCCCAGCGACCCCACTACGTG
CAATCACCTGCATCCGAAGTAACTCCTGCCTGCGATAATCAGCAGCTAGA
TAAAATGCAATAGAAGCTTTCTAGACCAT
BS05780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-RB | 1347 | CG9356-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
CG9356-RA | 1347 | CG9356-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-RB | 1519 | CG9356-RB | 113..1459 | 17..1363 | 6735 | 100 | Plus |
CG9356-RA | 1578 | CG9356-RA | 172..1518 | 17..1363 | 6735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9402842..9404039 | 1214..17 | 5990 | 100 | Minus |
3R | 32079331 | 3R | 9402624..9402774 | 1363..1213 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:56:19 has no hits.
BS05780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:53 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RB | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:50 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RB | 93..1450 | 9..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:09 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 172..1518 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:54 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RB | 93..1450 | 9..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:13 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9356-RA | 172..1518 | 17..1363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:13 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9402624..9402773 | 1214..1363 | 100 | <- | Minus |
3R | 9402843..9404039 | 17..1213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:09 Download gff for
BS05780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5228346..5228495 | 1214..1363 | 100 | <- | Minus |
arm_3R | 5228565..5229761 | 17..1213 | 100 | | Minus |
BS05780.pep Sequence
Translation from 16 to 1362
> BS05780.pep
MEANESAMPGTDKSQACRTSGDGMEQPENSGAAKTESEIPASADVDNKVK
RPQLSRKDSSVVQEAVMGRKTSTSSGHSSNLPLPGLHTLYRRPENVTRSL
APVVPKGELVQMRPRLVTSADSLPEHKKTKAPKFVPYEPYPGAVNPMISE
PTNKHKIHRDKNNLDIAVLVDQVSTLRTQELETETTDIKETDTASSHEVN
SLKEELAKMRDERNYFQAQYKFQTQVNSELKSLLVASVGEDLQTRVNLLT
EDKLQLARALLDTANNLTTHTEQIEFLAGQCEVWRSKFLASSVMVEELAR
WKADLTQKNQLLNESTKQLLHATHQIREIQLDMLKQLKFLAKIRFLNLPA
TDVISLSAENLNILQRMVLHTGVGIPEETLKLSSASTSPLCEAEKYAVRA
LEFISQPLMATDEAIRALFDQAQRPHYVQSPASEVTPACDNQQLDKMQ*
BS05780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9356-PB | 448 | CG9356-PB | 1..448 | 1..448 | 2258 | 100 | Plus |
CG9356-PA | 448 | CG9356-PA | 1..448 | 1..448 | 2258 | 100 | Plus |