Clone Sequence Records
BS05784.3prime Sequence
788 bp (746 high quality bases) assembled on 2005-12-03
> BS05784.3prime
ATGGTCTAGAAAGCTTTCAATTGCCCCACACGATGCTCTCGATCCAGTCG
GTGTAGAGGTGGACTTTGGTATAGACACTCGGGAGTCCTTGGGAGCCACA
AACTAATCCATATGAGACAATCCCTATGACCTGCTTCAGGCACGGATAGA
GCGGATGCTGGACGAATATAGGTCCGCCGGAGTCACCGTTGCAGGTGTCC
GCTTGGCTGGACATTGAGCCGGCACAGAACTGGGTGCGTGTATCGATGCT
GAAACGCAGGCGCTTCTGGCACACCTCGTCACTGAATCGCTGGAGGTTGA
CCTTCAGCAGGTGCGAGGACTTCACACCGTCCGCGGTAAATCCCCAGCCG
GCGGCTGTGACCTGCTGAACATCGTTGCCGCTGTCTGGCGGAAGGCATAC
CGCTGCCACATGGTCGTTGAACTCAGCCTTCCGATCCAGTTCCACCAGGG
CAATATCGTTTTTAAAGCCCTGCTCTTCGTCTTCAGTATCATATCCAGGG
TGCACCACATAGTTGACCACCCGAAAGTCCTGAACCAGAGCATCATCGGT
GGTGCTGTTGTAGTCCAGCTCCCCCAGGCGAACTACAAATTTGGGCGAAT
CAAAGTTTGGGTCCAGTCGCTCGGCCTTCGATTCATCCGTCTCCAGGCAA
TGCGCCGCAGTCAGTACGAATTTGGGATGCACCACGGATCCACCACAATC
CCAATTGATGTCCGACTTGGACTTGTTGGGCCGATGAGTGCCGATTAGGG
CCATGAAGGGAAACTCTTTTACGGATGCCTTTGTGCCG
BS05784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 1083 | CG3700-RA | 312..1083 | 788..17 | 3810 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 342..1113 | 788..17 | 3830 | 99.7 | Minus |
CG4927-RC | 1449 | CG4927-RC | 450..1109 | 679..23 | 355 | 71.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22895060..22895675 | 632..17 | 3080 | 100 | Minus |
2R | 25286936 | 2R | 22894841..22894996 | 788..633 | 750 | 98.7 | Minus |
2R | 25286936 | 2R | 16573599..16573814 | 238..23 | 315 | 76.4 | Minus |
2R | 25286936 | 2R | 16573258..16573333 | 576..501 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:13:43 has no hits.
BS05784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:21 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 312..1083 | 17..788 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:54 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 312..1083 | 17..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:45 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 342..1120 | 6..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:14 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 342..1120 | 6..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:14 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894841..22894996 | 633..788 | 98 | -> | Minus |
2R | 22895060..22895682 | 6..632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:45 Download gff for
BS05784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18782364..18782519 | 633..788 | 98 | -> | Minus |
arm_2R | 18782583..18783205 | 6..632 | 99 | | Minus |
BS05784.5prime Sequence
736 bp (727 high quality bases) assembled on 2005-12-03
> BS05784.5prime
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGC
BS05784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 1083 | CG3700-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 31..750 | 17..736 | 3600 | 100 | Plus |
CG4927-RC | 1449 | CG4927-RC | 450..628 | 437..615 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22894465..22894717 | 17..269 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 22895060..22895312 | 484..736 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 22894783..22894996 | 270..483 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 16573258..16573333 | 540..615 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:20:41 has no hits.
BS05784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:23 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:55 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:48 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 29..750 | 13..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:11 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 29..750 | 13..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:11 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894463..22894717 | 13..269 | 99 | -> | Plus |
2R | 22894783..22894996 | 270..483 | 100 | -> | Plus |
2R | 22895060..22895312 | 484..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:48 Download gff for
BS05784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18781986..18782240 | 13..269 | 99 | -> | Plus |
arm_2R | 18782306..18782519 | 270..483 | 100 | -> | Plus |
arm_2R | 18782583..18782835 | 484..736 | 100 | | Plus |
BS05784.complete Sequence
1115 bp (1115 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635234
> BS05784.complete
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCT
CGCACCTGCTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAG
AAGCGCCTGCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTC
AATGTCCAGCCAAGCGGACACCTGCAACGGTGACTCCGGCGGACCTATAT
TCGTCCAGCATCCGCTCTATCCGTGCCTGAAGCAGGTCATAGGGATTGTC
TCATATGGATTAGTTTGTGGCTCCCAAGGACTCCCGAGTGTCTATACCAA
AGTCCACCTCTACACCGACTGGATCGAGAGCATCGTGTGGGGCAATTGAA
AGCTTTCTAGACCAT
BS05784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1083 | CG3700-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG4927-RC | 1089 | CG4927-PC | 868..1083 | 878..1093 | 315 | 76.4 | Plus |
CG4927-RC | 1089 | CG4927-PC | 424..602 | 437..615 | 220 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 31..1113 | 17..1099 | 5415 | 100 | Plus |
CG4927-RC | 1449 | CG4927-RC | 894..1109 | 878..1093 | 315 | 76.4 | Plus |
CG4927-RC | 1449 | CG4927-RC | 450..628 | 437..615 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22895060..22895675 | 484..1099 | 3080 | 100 | Plus |
2R | 25286936 | 2R | 22894465..22894717 | 17..269 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 22894783..22894996 | 270..483 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 16573599..16573814 | 878..1093 | 315 | 76.4 | Plus |
2R | 25286936 | 2R | 16573258..16573333 | 540..615 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:38 has no hits.
BS05784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:38 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 1..1083 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:31 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 4664..5755 | 13..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:33 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 31..1112 | 17..1098 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:38 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 4664..5755 | 13..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:33 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 31..1112 | 17..1098 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:33 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894465..22894717 | 17..269 | 100 | -> | Plus |
2R | 22894783..22894996 | 270..483 | 100 | -> | Plus |
2R | 22895060..22895674 | 484..1098 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:33 Download gff for
BS05784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18781988..18782240 | 17..269 | 100 | -> | Plus |
arm_2R | 18782306..18782519 | 270..483 | 100 | -> | Plus |
arm_2R | 18782583..18783197 | 484..1098 | 100 | | Plus |
BS05784.pep Sequence
Translation from 16 to 1098
> BS05784.pep
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGN*
BS05784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 360 | CG3700-PA | 1..360 | 1..360 | 1946 | 100 | Plus |
CG4927-PC | 362 | CG4927-PC | 7..361 | 9..359 | 1235 | 63.6 | Plus |
CG11843-PB | 316 | CG11843-PB | 61..309 | 96..353 | 519 | 43.1 | Plus |
CG11843-PA | 316 | CG11843-PA | 61..309 | 96..353 | 519 | 43.1 | Plus |
CG11841-PA | 319 | CG11841-PA | 59..311 | 89..354 | 477 | 39.7 | Plus |