Clone BS05784 Report

Search the DGRC for BS05784

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG3700-RA
Protein status:BS05784.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05784.3prime Sequence

788 bp (746 high quality bases) assembled on 2005-12-03

> BS05784.3prime
ATGGTCTAGAAAGCTTTCAATTGCCCCACACGATGCTCTCGATCCAGTCG
GTGTAGAGGTGGACTTTGGTATAGACACTCGGGAGTCCTTGGGAGCCACA
AACTAATCCATATGAGACAATCCCTATGACCTGCTTCAGGCACGGATAGA
GCGGATGCTGGACGAATATAGGTCCGCCGGAGTCACCGTTGCAGGTGTCC
GCTTGGCTGGACATTGAGCCGGCACAGAACTGGGTGCGTGTATCGATGCT
GAAACGCAGGCGCTTCTGGCACACCTCGTCACTGAATCGCTGGAGGTTGA
CCTTCAGCAGGTGCGAGGACTTCACACCGTCCGCGGTAAATCCCCAGCCG
GCGGCTGTGACCTGCTGAACATCGTTGCCGCTGTCTGGCGGAAGGCATAC
CGCTGCCACATGGTCGTTGAACTCAGCCTTCCGATCCAGTTCCACCAGGG
CAATATCGTTTTTAAAGCCCTGCTCTTCGTCTTCAGTATCATATCCAGGG
TGCACCACATAGTTGACCACCCGAAAGTCCTGAACCAGAGCATCATCGGT
GGTGCTGTTGTAGTCCAGCTCCCCCAGGCGAACTACAAATTTGGGCGAAT
CAAAGTTTGGGTCCAGTCGCTCGGCCTTCGATTCATCCGTCTCCAGGCAA
TGCGCCGCAGTCAGTACGAATTTGGGATGCACCACGGATCCACCACAATC
CCAATTGATGTCCGACTTGGACTTGTTGGGCCGATGAGTGCCGATTAGGG
CCATGAAGGGAAACTCTTTTACGGATGCCTTTGTGCCG

BS05784.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 1083 CG3700-RA 312..1083 788..17 3810 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 342..1113 788..17 3830 99.7 Minus
CG4927-RC 1449 CG4927-RC 450..1109 679..23 355 71.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895675 632..17 3080 100 Minus
2R 25286936 2R 22894841..22894996 788..633 750 98.7 Minus
2R 25286936 2R 16573599..16573814 238..23 315 76.4 Minus
2R 25286936 2R 16573258..16573333 576..501 185 82.9 Minus
Blast to na_te.dros performed on 2015-01-31 17:13:43 has no hits.

BS05784.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:21 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 312..1083 17..788 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:54 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 312..1083 17..788 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:45 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 342..1120 6..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:14 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 342..1120 6..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:14 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22894841..22894996 633..788 98 -> Minus
2R 22895060..22895682 6..632 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:45 Download gff for BS05784.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18782364..18782519 633..788 98 -> Minus
arm_2R 18782583..18783205 6..632 99   Minus

BS05784.5prime Sequence

736 bp (727 high quality bases) assembled on 2005-12-03

> BS05784.5prime
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGC

BS05784.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 1083 CG3700-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 31..750 17..736 3600 100 Plus
CG4927-RC 1449 CG4927-RC 450..628 437..615 220 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22894465..22894717 17..269 1265 100 Plus
2R 25286936 2R 22895060..22895312 484..736 1265 100 Plus
2R 25286936 2R 22894783..22894996 270..483 1070 100 Plus
2R 25286936 2R 16573258..16573333 540..615 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-12 20:20:41 has no hits.

BS05784.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:23 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:54:55 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 1..720 17..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:48 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..750 13..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:11 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..750 13..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:11 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22894463..22894717 13..269 99 -> Plus
2R 22894783..22894996 270..483 100 -> Plus
2R 22895060..22895312 484..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:48 Download gff for BS05784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18781986..18782240 13..269 99 -> Plus
arm_2R 18782306..18782519 270..483 100 -> Plus
arm_2R 18782583..18782835 484..736 100   Plus

BS05784.complete Sequence

1115 bp (1115 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635234

> BS05784.complete
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCT
CGCACCTGCTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAG
AAGCGCCTGCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTC
AATGTCCAGCCAAGCGGACACCTGCAACGGTGACTCCGGCGGACCTATAT
TCGTCCAGCATCCGCTCTATCCGTGCCTGAAGCAGGTCATAGGGATTGTC
TCATATGGATTAGTTTGTGGCTCCCAAGGACTCCCGAGTGTCTATACCAA
AGTCCACCTCTACACCGACTGGATCGAGAGCATCGTGTGGGGCAATTGAA
AGCTTTCTAGACCAT

BS05784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1083 CG3700-PA 1..1083 17..1099 5415 100 Plus
CG4927-RC 1089 CG4927-PC 868..1083 878..1093 315 76.4 Plus
CG4927-RC 1089 CG4927-PC 424..602 437..615 220 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 31..1113 17..1099 5415 100 Plus
CG4927-RC 1449 CG4927-RC 894..1109 878..1093 315 76.4 Plus
CG4927-RC 1449 CG4927-RC 450..628 437..615 220 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895675 484..1099 3080 100 Plus
2R 25286936 2R 22894465..22894717 17..269 1265 100 Plus
2R 25286936 2R 22894783..22894996 270..483 1070 100 Plus
2R 25286936 2R 16573599..16573814 878..1093 315 76.4 Plus
2R 25286936 2R 16573258..16573333 540..615 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:44:38 has no hits.

BS05784.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:38 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 1..1083 17..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:31 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 4664..5755 13..1110 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:33 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 31..1112 17..1098 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:38 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 4664..5755 13..1110 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:33 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 31..1112 17..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:33 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22894465..22894717 17..269 100 -> Plus
2R 22894783..22894996 270..483 100 -> Plus
2R 22895060..22895674 484..1098 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:33 Download gff for BS05784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18781988..18782240 17..269 100 -> Plus
arm_2R 18782306..18782519 270..483 100 -> Plus
arm_2R 18782583..18783197 484..1098 100   Plus

BS05784.pep Sequence

Translation from 16 to 1098

> BS05784.pep
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGN*

BS05784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 360 CG3700-PA 1..360 1..360 1946 100 Plus
CG4927-PC 362 CG4927-PC 7..361 9..359 1235 63.6 Plus
CG11843-PB 316 CG11843-PB 61..309 96..353 519 43.1 Plus
CG11843-PA 316 CG11843-PA 61..309 96..353 519 43.1 Plus
CG11841-PA 319 CG11841-PA 59..311 89..354 477 39.7 Plus