Clone Sequence Records
BS05790.3prime Sequence
817 bp (779 high quality bases) assembled on 2005-12-03
> BS05790.3prime
ATGGTCTAGAAAGCTTTCAAACGGCCAATGCATCGTTTTGGGACTCGTGG
CTGAGTTGCGTCTGCAGGTTTGACAGCTTGTTCTTCAGCACCTGCACACC
CATGACCACAATGTTCTCAGGCTTAAGGGCACCGGCGGATTCGACGTTGA
AGAAGAACTTGTTTGGCTTGGCTTCCCAGTTGTAGGGCGCCTCGTACTGG
TCGTCCTCCAGTTCGGTGTGCTCGCTCTTTGGCCACTCATCAGGTTTGGG
ATACAGAGTGTGTCGCATGGAGTTGTCCGGATCATACTCGAAGCACACGC
CTGCGGTAGGATTCCACTTGGCGTGCTCCTTGCCAAATCCCTTCTTGGCG
TAGGCGCGCAGCTTCAGCTCCTGCCCCTTGCGCAGCTTAATTATGAGGAT
CTCATCGTTGCTCTCGCCGTACTCGTTGTCCTCCTCACCCTGGTTGCGGG
ACGTCACCGGCAGGACCTTGGCATTGCTCGACTTGAGATCGGCGGTGGTC
ACGTGGCGCGTCTGTTCCTCGCTGCACTTTACGTCCAGGGTGAACTCCAC
GCTGCATTCGGGGCAGAAGTCCAGGCAGATACAGTCACGCGTGTACTGCA
GCCGCTCCACGACGTCGTCGGAGATCAGCGGTATCAGACCGATCCGGTGG
GCTAAAAACTCATCCGAGAGCACCGTAGAGTTGGCTTCCAGTTGCACCCA
GTCGATGGCCAGCGTCGGCGTCTCCGCGATGAACACTCGCCGCAGGCTGT
TGGCCACACTCAGTTCCGTGTCCTCCAGGACGAACTTTACGTTGTCGTCC
GTCAGCTCGGTTATCTG
BS05790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7885-PA | 828 | RpII33-RA | 28..828 | 817..17 | 4005 | 100 | Minus |
| CG7885-PB | 354 | RpII33-RB | 28..262 | 817..583 | 1175 | 100 | Minus |
| CG7885-PB | 354 | RpII33-RB | 263..354 | 526..435 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 115..915 | 817..17 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833451..13834251 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:27:18 has no hits.
BS05790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:32 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 28..828 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:08 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 28..828 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:40 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 115..918 | 10..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:20 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 115..918 | 10..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:20 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833451..13834254 | 10..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:40 Download gff for
BS05790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833451..13834254 | 10..817 | 99 | | Minus |
BS05790.5prime Sequence
787 bp (786 high quality bases) assembled on 2005-12-03
> BS05790.5prime
GAAGTTATCAGTCGACATGCCGTACGCCAACCAGCCGTCCGTGCAGATAA
CCGAGCTGACGGACGACAACGTAAAGTTCGTCCTGGAGGACACGGAACTG
AGTGTGGCCAACAGCCTGCGGCGAGTGTTCATCGCGGAGACGCCGACGCT
GGCCATCGACTGGGTGCAACTGGAAGCCAACTCTACGGTGCTCTCGGATG
AGTTTTTAGCCCACCGGATCGGTCTGATACCGCTGATCTCCGACGACGTC
GTGGAGCGGCTGCAGTACACGCGTGACTGTATCTGCCTGGACTTCTGCCC
CGAATGCAGCGTGGAGTTCACCCTGGACGTAAAGTGCAGCGAGGAACAGA
CGCGCCACGTGACCACCGCCGATCTCAAGTCGAGCAATGCCAAGGTCCTG
CCGGTGACGTCCCGCAACCAGGGTGAGGAGGACAACGAGTACGGCGAGAG
CAACGATGAGATCCTCATAATTAAGCTGCGCAAGGGGCAGGAGCTGAAGC
TGCGCGCCTACGCCAAGAAGGGATTTGGCAAGGAGCACGCCAAGTGGAAT
CCTACCGCAGGCGTGTGCTTCGAGTATGATCCGGACAACTCCATGCGACA
CACTCTGTATCCCAAACCTGATGAGTGGCCAAAGAGCGAGCACACCGAAC
TGGAGGACGACCAGTACGAGGCGCCCTACAACTGGGAAGCCAAGCCAAAC
AAGTTCTTCTTCAACGTCGAATCCGCCGGTGCCCTTAAGCCTGAGAACAT
TGTGGTCATGGGTGTGCAGGTGCTGAAGAACAAGCTG
BS05790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7885-PA | 828 | RpII33-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
| CG7885-PB | 354 | RpII33-RB | 1..262 | 17..278 | 1310 | 100 | Plus |
| CG7885-PB | 354 | RpII33-RB | 263..354 | 335..426 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 88..858 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833424..13834194 | 17..787 | 3855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:55:34 has no hits.
BS05790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:33 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:09 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:27 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..858 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:23 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..858 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:23 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833424..13834194 | 17..787 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:27 Download gff for
BS05790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833424..13834194 | 17..787 | 100 | | Plus |
BS05790.complete Sequence
860 bp (860 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635235
> BS05790.complete
GAAGTTATCAGTCGACATGCCGTACGCCAACCAGCCGTCCGTGCAGATAA
CCGAGCTGACGGACGACAACGTAAAGTTCGTCCTGGAGGACACGGAACTG
AGTGTGGCCAACAGCCTGCGGCGAGTGTTCATCGCGGAGACGCCGACGCT
GGCCATCGACTGGGTGCAACTGGAAGCCAACTCTACGGTGCTCTCGGATG
AGTTTTTAGCCCACCGGATCGGTCTGATACCGCTGATCTCCGACGACGTC
GTGGAGCGGCTGCAGTACACGCGTGACTGTATCTGCCTGGACTTCTGCCC
CGAATGCAGCGTGGAGTTCACCCTGGACGTAAAGTGCAGCGAGGAACAGA
CGCGCCACGTGACCACCGCCGATCTCAAGTCGAGCAATGCCAAGGTCCTG
CCGGTGACGTCCCGCAACCAGGGTGAGGAGGACAACGAGTACGGCGAGAG
CAACGATGAGATCCTCATAATTAAGCTGCGCAAGGGGCAGGAGCTGAAGC
TGCGCGCCTACGCCAAGAAGGGATTTGGCAAGGAGCACGCCAAGTGGAAT
CCTACCGCAGGCGTGTGCTTCGAGTATGATCCGGACAACTCCATGCGACA
CACTCTGTATCCCAAACCTGATGAGTGGCCAAAGAGCGAGCACACCGAAC
TGGAGGACGACCAGTACGAGGCGCCCTACAACTGGGAAGCCAAGCCAAAC
AAGTTCTTCTTCAACGTCGAATCCGCCGGTGCCCTTAAGCCTGAGAACAT
TGTGGTCATGGGTGTGCAGGTGCTGAAGAACAAGCTGTCAAACCTGCAGA
CGCAACTCAGCCACGAGTCCCAAAACGATGCATTGGCCGTTTGAAAGCTT
TCTAGACCAT
BS05790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 828 | CG7885-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 88..915 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833424..13834251 | 17..844 | 4140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:39:10 has no hits.
BS05790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:42 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:57:36 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 86..916 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:00 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..914 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:43 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 86..916 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:35 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..914 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:35 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833424..13834250 | 17..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:00 Download gff for
BS05790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833424..13834250 | 17..843 | 100 | | Plus |
BS05790.pep Sequence
Translation from 16 to 843
> BS05790.pep
MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWV
QLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVE
FTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEIL
IIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK
PDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGV
QVLKNKLSNLQTQLSHESQNDALAV*
BS05790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-PA | 275 | CG7885-PA | 1..275 | 1..275 | 1445 | 100 | Plus |
| CG3756-PA | 333 | CG3756-PA | 43..333 | 9..267 | 257 | 27 | Plus |
