Clone BS05792 Report

Search the DGRC for BS05792

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:57
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG6218-RA
Protein status:BS05792.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05792.3prime Sequence

887 bp (774 high quality bases) assembled on 2005-12-03

> BS05792.3prime
ATGGTCTAGAAAGCTTCTAACAGTTACAGCCGTTGGTGGCTTTGGCTTTC
TTTCGAGGATCGGTGTACGTGTACAGTACTGTGACGTTGTCGGCATAGTT
TCTCGGAAGATCGAAGTCCGCACTATCCGCACCCAGGTAGCAGGCTCCGT
AGGCACTGCTCTTGGTGATGCGCACCAGCTTGAGGTCGAAGTCGATGGTT
GTCTTAGCGAGTTCACTGATGAAGGCCTCCTGCAGCAGATCCCAGCTGGA
CCACACGGATCCTACGCACACTACGCTTAGGTCCCCGGACTTGACCAGAT
CCTGGTGCACATTGGGCAGCAGGGCAAGGATCATTCTGGCCAGATGAACG
CCAGCTTCGCGAAACAAGCTGCGCGCCAGTTCGTCTCCATTTTCGGCGTT
CTGCGACAGCTTTTTGCACAGATTGGCGAAGAAGGGCTTGTCGAACTTGG
CGTAACAGTGCGGCAGCATATCCAGGCGCGTCTCCAAACTAAAGTGCTCC
TTGATCAGACTCCAAGTTTTCTCCACGGGAGCCGCTGACTGCTCAAAGTT
GTCCATATGGTCGAACACCACCTTGACTGCGCGATACGAGATGTACCAGG
CGCTTCCCTCGTCCCCGAGGAAGTTGCCCCAGCCGCCACAATTGGACGTG
GAGCCGTCAGGGTTACGCAGCAGGCAATTGGATCCGGTTCCTGAAATAAG
GACCATTCCTCCGATGGACGAGGCGGTGTACATGCTGCCCATGGTGTCGC
TGGACACGGCATAGTTCTGGGCCAGGCCCCGGAACGTGGTGCGCAGCTCC
TGCTCCAGCTCGCGATTGGTGGCCTCCTGCTCGCAGCCGCTAAGGCTCAA
TCCCAGACTTGTGAGGGGCGTCTCCTTGGGGATGCCC

BS05792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-PA 1047 CG6218-RA 177..1047 887..17 4280 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-RB 1400 CG6218-RB 399..1270 887..16 4315 99.7 Minus
CG6218-RA 2091 CG6218-RA 545..1416 887..16 4315 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15338583..15339168 16..601 2930 100 Plus
3R 32079331 3R 15339360..15339588 601..829 1115 99.1 Plus
3R 32079331 3R 15339678..15339739 826..887 295 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 04:09:58 has no hits.

BS05792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:37 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-PA 177..1047 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:14 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-PA 177..1047 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:54 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 545..1422 11..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:45 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 545..1422 11..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:45 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15338577..15339167 11..600 99 <- Plus
3R 15339360..15339585 601..826 99 <- Plus
3R 15339679..15339739 827..887 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:54 Download gff for BS05792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11164299..11164889 11..600 99 <- Plus
arm_3R 11165082..11165307 601..826 99 <- Plus
arm_3R 11165401..11165461 827..887 98   Plus

BS05792.5prime Sequence

848 bp (790 high quality bases) assembled on 2005-12-03

> BS05792.5prime
GAAGTTATCAGTCGACATGAAATATTTTGGCGGAGTCGAAGGCGGAGCCA
CCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCGCC
ACCAGCGGCCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGCGC
CCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCATTC
CCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCGAG
CAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCC
GGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCATGT
ACACCGCCTCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGATCC
AATTGCCTGCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGCTG
GGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCGCG
CAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGGCT
CCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAGAC
GCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTTCT
TCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAANATGGAGACGAA
CTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATGAT
CCTTGCCCTGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGACC
TAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGC

BS05792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-PA 1047 CG6218-RA 1..832 17..848 4141 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-RB 1400 CG6218-RB 223..1054 17..848 4149 99.9 Plus
CG6218-RA 2091 CG6218-RA 369..1200 17..848 4149 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15338799..15339168 848..479 1839 99.7 Minus
3R 32079331 3R 15339360..15339588 479..251 1145 100 Minus
3R 32079331 3R 15339678..15339890 254..42 1065 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:18:52 has no hits.

BS05792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:38 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:16 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:48 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 364..1200 12..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:07 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 364..1200 12..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:07 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15339360..15339585 254..479 100 <- Minus
3R 15339679..15339889 43..253 100 <- Minus
3R 15342289..15342319 12..42 93   Minus
3R 15338799..15339167 480..848 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:48 Download gff for BS05792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11165401..11165611 43..253 100 <- Minus
arm_3R 11168011..11168041 12..42 93   Minus
arm_3R 11164521..11164889 480..848 99 <- Minus
arm_3R 11165082..11165307 254..479 100 <- Minus

BS05792.complete Sequence

1079 bp (1079 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ635237

> BS05792.complete
GAAGTTATCAGTCGACATGAAATATTTTGGCGGAGTCGAAGGCGGAGCCA
CCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCGCC
ACCAGCGGCCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGCGC
CCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCATTC
CCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCGAG
CAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCC
GGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCATGT
ACACCGCCTCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGATCC
AATTGCCTGCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGCTG
GGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCGCG
CAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGGCT
CCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAGAC
GCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTTCT
TCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAAAATGGAGACGAA
CTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATGAT
CCTTGCCCTGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGACC
TAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGCAG
GAGGCCTTCATCAGTGAACTCGCTAAGACAACCATCGACTTCGACCTCAA
GCTGGTGCGCATCACCAAGAGCAGTGCCTACGGAGCCTGCTACCTGGGTG
CGGATAGTGCGGACTTCGATCTTCCGAGAAACTATGCCGACAACGTCACA
GTACTGTACACGTACACCGATCCTCGAAAGAAAGCCAAAGCCACCAACGG
CTGTAACTGTTAGAAGCTTTCTAGACCAT

BS05792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-RB 1047 CG6218-PB 1..1047 17..1063 5235 100 Plus
CG6218-RA 1047 CG6218-PA 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-RB 1400 CG6218-RB 223..1270 17..1064 5240 100 Plus
CG6218-RA 2091 CG6218-RA 369..1416 17..1064 5240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15338583..15339168 1064..479 2930 100 Minus
3R 32079331 3R 15339360..15339588 479..251 1145 100 Minus
3R 32079331 3R 15339678..15339890 254..42 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:03:13 has no hits.

BS05792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:33 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:26 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 364..1422 12..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:08:30 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 369..1415 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:33 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 364..1422 12..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:40 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
CG6218-RA 369..1415 17..1063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:40 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15339679..15339889 43..253 100 <- Minus
3R 15342289..15342314 17..42 100   Minus
3R 15338584..15339167 480..1063 100 <- Minus
3R 15339360..15339585 254..479 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:08:30 Download gff for BS05792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11164306..11164889 480..1063 100 <- Minus
arm_3R 11165082..11165307 254..479 100 <- Minus
arm_3R 11165401..11165611 43..253 100 <- Minus
arm_3R 11168011..11168036 17..42 100   Minus

BS05792.pep Sequence

Translation from 16 to 1062

> BS05792.pep
MKYFGGVEGGATHSRLVICDESGQSVGATSGLGTNHWGIGIPECARRIAD
MVERAKEEAGIPKETPLTSLGLSLSGCEQEATNRELEQELRTTFPGLAQN
YAVSSDTMGSMYTASSIGGMVLISGTGSNCLLRNPDGSTSNCGGWGNFLG
DEGSAWYISYRAVKVVFDHMDNFEQSAAPVEKTWSLIKEHFSLETRLDML
PHCYAKFDKPFFANLCKKLSQNAENGDELARSLFREAGVHLARMILALLP
NVHQDLVKSGDLSVVCVGSVWSSWDLLQEAFISELAKTTIDFDLKLVRIT
KSSAYGACYLGADSADFDLPRNYADNVTVLYTYTDPRKKAKATNGCNC*

BS05792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6218-PB 348 CG6218-PB 1..348 1..348 1836 100 Plus
CG6218-PA 348 CG6218-PA 1..348 1..348 1836 100 Plus