Clone Sequence Records
BS05792.3prime Sequence
887 bp (774 high quality bases) assembled on 2005-12-03
> BS05792.3prime
ATGGTCTAGAAAGCTTCTAACAGTTACAGCCGTTGGTGGCTTTGGCTTTC
TTTCGAGGATCGGTGTACGTGTACAGTACTGTGACGTTGTCGGCATAGTT
TCTCGGAAGATCGAAGTCCGCACTATCCGCACCCAGGTAGCAGGCTCCGT
AGGCACTGCTCTTGGTGATGCGCACCAGCTTGAGGTCGAAGTCGATGGTT
GTCTTAGCGAGTTCACTGATGAAGGCCTCCTGCAGCAGATCCCAGCTGGA
CCACACGGATCCTACGCACACTACGCTTAGGTCCCCGGACTTGACCAGAT
CCTGGTGCACATTGGGCAGCAGGGCAAGGATCATTCTGGCCAGATGAACG
CCAGCTTCGCGAAACAAGCTGCGCGCCAGTTCGTCTCCATTTTCGGCGTT
CTGCGACAGCTTTTTGCACAGATTGGCGAAGAAGGGCTTGTCGAACTTGG
CGTAACAGTGCGGCAGCATATCCAGGCGCGTCTCCAAACTAAAGTGCTCC
TTGATCAGACTCCAAGTTTTCTCCACGGGAGCCGCTGACTGCTCAAAGTT
GTCCATATGGTCGAACACCACCTTGACTGCGCGATACGAGATGTACCAGG
CGCTTCCCTCGTCCCCGAGGAAGTTGCCCCAGCCGCCACAATTGGACGTG
GAGCCGTCAGGGTTACGCAGCAGGCAATTGGATCCGGTTCCTGAAATAAG
GACCATTCCTCCGATGGACGAGGCGGTGTACATGCTGCCCATGGTGTCGC
TGGACACGGCATAGTTCTGGGCCAGGCCCCGGAACGTGGTGCGCAGCTCC
TGCTCCAGCTCGCGATTGGTGGCCTCCTGCTCGCAGCCGCTAAGGCTCAA
TCCCAGACTTGTGAGGGGCGTCTCCTTGGGGATGCCC
BS05792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-PA | 1047 | CG6218-RA | 177..1047 | 887..17 | 4280 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-RB | 1400 | CG6218-RB | 399..1270 | 887..16 | 4315 | 99.7 | Minus |
CG6218-RA | 2091 | CG6218-RA | 545..1416 | 887..16 | 4315 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15338583..15339168 | 16..601 | 2930 | 100 | Plus |
3R | 32079331 | 3R | 15339360..15339588 | 601..829 | 1115 | 99.1 | Plus |
3R | 32079331 | 3R | 15339678..15339739 | 826..887 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:09:58 has no hits.
BS05792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:37 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-PA | 177..1047 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:14 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-PA | 177..1047 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:54 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 545..1422 | 11..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:45 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 545..1422 | 11..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:45 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15338577..15339167 | 11..600 | 99 | <- | Plus |
3R | 15339360..15339585 | 601..826 | 99 | <- | Plus |
3R | 15339679..15339739 | 827..887 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:54 Download gff for
BS05792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11164299..11164889 | 11..600 | 99 | <- | Plus |
arm_3R | 11165082..11165307 | 601..826 | 99 | <- | Plus |
arm_3R | 11165401..11165461 | 827..887 | 98 | | Plus |
BS05792.5prime Sequence
848 bp (790 high quality bases) assembled on 2005-12-03
> BS05792.5prime
GAAGTTATCAGTCGACATGAAATATTTTGGCGGAGTCGAAGGCGGAGCCA
CCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCGCC
ACCAGCGGCCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGCGC
CCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCATTC
CCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCGAG
CAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCC
GGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCATGT
ACACCGCCTCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGATCC
AATTGCCTGCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGCTG
GGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCGCG
CAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGGCT
CCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAGAC
GCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTTCT
TCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAANATGGAGACGAA
CTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATGAT
CCTTGCCCTGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGACC
TAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGC
BS05792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-PA | 1047 | CG6218-RA | 1..832 | 17..848 | 4141 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-RB | 1400 | CG6218-RB | 223..1054 | 17..848 | 4149 | 99.9 | Plus |
CG6218-RA | 2091 | CG6218-RA | 369..1200 | 17..848 | 4149 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15338799..15339168 | 848..479 | 1839 | 99.7 | Minus |
3R | 32079331 | 3R | 15339360..15339588 | 479..251 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 15339678..15339890 | 254..42 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:18:52 has no hits.
BS05792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:22:38 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:16 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:48 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 364..1200 | 12..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:07 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 364..1200 | 12..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:07 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15339360..15339585 | 254..479 | 100 | <- | Minus |
3R | 15339679..15339889 | 43..253 | 100 | <- | Minus |
3R | 15342289..15342319 | 12..42 | 93 | | Minus |
3R | 15338799..15339167 | 480..848 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:48 Download gff for
BS05792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11165401..11165611 | 43..253 | 100 | <- | Minus |
arm_3R | 11168011..11168041 | 12..42 | 93 | | Minus |
arm_3R | 11164521..11164889 | 480..848 | 99 | <- | Minus |
arm_3R | 11165082..11165307 | 254..479 | 100 | <- | Minus |
BS05792.complete Sequence
1079 bp (1079 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ635237
> BS05792.complete
GAAGTTATCAGTCGACATGAAATATTTTGGCGGAGTCGAAGGCGGAGCCA
CCCACTCCAGACTGGTCATCTGCGATGAGAGCGGCCAATCTGTGGGCGCC
ACCAGCGGCCTGGGCACCAATCACTGGGGCATTGGCATTCCGGAGTGCGC
CCGCCGGATCGCTGACATGGTGGAGCGGGCGAAGGAGGAGGCGGGCATTC
CCAAGGAGACGCCCCTCACAAGTCTGGGATTGAGCCTTAGCGGCTGCGAG
CAGGAGGCCACCAATCGCGAGCTGGAGCAGGAGCTGCGCACCACGTTTCC
GGGCCTGGCCCAGAACTATGCCGTGTCCAGCGACACCATGGGCAGCATGT
ACACCGCCTCGTCCATCGGAGGAATGGTCCTTATTTCAGGAACCGGATCC
AATTGCCTGCTGCGTAACCCTGACGGCTCCACGTCCAATTGTGGCGGCTG
GGGCAACTTCCTCGGGGACGAGGGAAGCGCCTGGTACATCTCGTATCGCG
CAGTCAAGGTGGTGTTCGACCATATGGACAACTTTGAGCAGTCAGCGGCT
CCCGTGGAGAAAACTTGGAGTCTGATCAAGGAGCACTTTAGTTTGGAGAC
GCGCCTGGATATGCTGCCGCACTGTTACGCCAAGTTCGACAAGCCCTTCT
TCGCCAATCTGTGCAAAAAGCTGTCGCAGAACGCCGAAAATGGAGACGAA
CTGGCGCGCAGCTTGTTTCGCGAAGCTGGCGTTCATCTGGCCAGAATGAT
CCTTGCCCTGCTGCCCAATGTGCACCAGGATCTGGTCAAGTCCGGGGACC
TAAGCGTAGTGTGCGTAGGATCCGTGTGGTCCAGCTGGGATCTGCTGCAG
GAGGCCTTCATCAGTGAACTCGCTAAGACAACCATCGACTTCGACCTCAA
GCTGGTGCGCATCACCAAGAGCAGTGCCTACGGAGCCTGCTACCTGGGTG
CGGATAGTGCGGACTTCGATCTTCCGAGAAACTATGCCGACAACGTCACA
GTACTGTACACGTACACCGATCCTCGAAAGAAAGCCAAAGCCACCAACGG
CTGTAACTGTTAGAAGCTTTCTAGACCAT
BS05792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-RB | 1047 | CG6218-PB | 1..1047 | 17..1063 | 5235 | 100 | Plus |
CG6218-RA | 1047 | CG6218-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-RB | 1400 | CG6218-RB | 223..1270 | 17..1064 | 5240 | 100 | Plus |
CG6218-RA | 2091 | CG6218-RA | 369..1416 | 17..1064 | 5240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15338583..15339168 | 1064..479 | 2930 | 100 | Minus |
3R | 32079331 | 3R | 15339360..15339588 | 479..251 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 15339678..15339890 | 254..42 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:03:13 has no hits.
BS05792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:23:33 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:05:26 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 364..1422 | 12..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:08:30 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 369..1415 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:23:33 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 364..1422 | 12..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:40 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6218-RA | 369..1415 | 17..1063 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:40 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15339679..15339889 | 43..253 | 100 | <- | Minus |
3R | 15342289..15342314 | 17..42 | 100 | | Minus |
3R | 15338584..15339167 | 480..1063 | 100 | <- | Minus |
3R | 15339360..15339585 | 254..479 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:08:30 Download gff for
BS05792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11164306..11164889 | 480..1063 | 100 | <- | Minus |
arm_3R | 11165082..11165307 | 254..479 | 100 | <- | Minus |
arm_3R | 11165401..11165611 | 43..253 | 100 | <- | Minus |
arm_3R | 11168011..11168036 | 17..42 | 100 | | Minus |
BS05792.pep Sequence
Translation from 16 to 1062
> BS05792.pep
MKYFGGVEGGATHSRLVICDESGQSVGATSGLGTNHWGIGIPECARRIAD
MVERAKEEAGIPKETPLTSLGLSLSGCEQEATNRELEQELRTTFPGLAQN
YAVSSDTMGSMYTASSIGGMVLISGTGSNCLLRNPDGSTSNCGGWGNFLG
DEGSAWYISYRAVKVVFDHMDNFEQSAAPVEKTWSLIKEHFSLETRLDML
PHCYAKFDKPFFANLCKKLSQNAENGDELARSLFREAGVHLARMILALLP
NVHQDLVKSGDLSVVCVGSVWSSWDLLQEAFISELAKTTIDFDLKLVRIT
KSSAYGACYLGADSADFDLPRNYADNVTVLYTYTDPRKKAKATNGCNC*
BS05792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6218-PB | 348 | CG6218-PB | 1..348 | 1..348 | 1836 | 100 | Plus |
CG6218-PA | 348 | CG6218-PA | 1..348 | 1..348 | 1836 | 100 | Plus |