Clone BS05808 Report

Search the DGRC for BS05808

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG8080-RA
Protein status:BS05808.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05808.3prime Sequence

821 bp (642 high quality bases) assembled on 2005-12-03

> BS05808.3prime
ATGGTCTAGAAAGCTTTCAGTCTAAAGCGATTGTCAGAAGGGCATCTTCT
GGGTGAACCTCTAGCAAAGCCTTGGCGCCATCGTTGAAGGGGAACGAAAT
GCTGCCATCTATAACCAGGTTGGCATCGATGCAATGCGACTTGACAAACA
CGGTCTGCACAAAATCGCGCTCCTTAAAAGTCTTTGGCGAAGGCCACACG
CCCACGCAGATTTGCTCCCGGATGGAATAGCAGAGGCGCGGGTCGTCTGG
CGCGAAGAGCAGGCCTTGGTTGTACCGCTGGGCGATCTCCTCTGCATTTT
GTCGTAGCATCATCACGTTCTTTGAATCGCCGTCGGGCAGGGAACGCAAC
AGGTCGTCCACATCTCGGCTTGTGATGCGATTGATGCTGGTGTGCCAGGA
TGTTGAGCCCGTGCCCGTGCTGACGCACAGTCCGGAGCATTTGGTCTTGT
TCACCACGTCCTGGTGGTCCAGCACCAGTTGCAAGTGGGACACTCGGGCC
GATAGATGCTCGCCAATAAATACCTCGTTCAAAGCCAAGTAAGGAAGAAC
ACGTTTCATCTTGGCCTTGTACTTGTAGGCCATGTCCTGGTCCAGCATTT
CGGGTGCGGTGCTGACCTGCTCCATCTTGACCTCCGTGTGGCGGAAAAGG
TCAGTCGGCTCCGGAATATTGCCGTTGCTACCAAGCATCGTAGTCCGCAC
CCTCGAGCGATGCATCCACTTGAAATCTCCGCTCTTGATGCGGGAAACGG
CGTCGGCCGGATTATCCGAGTAGTGCTTGGGCAGCATGAGTCGGCCCTCC
GAGTGAAGCGGATCCGAGTTG

BS05808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-PA 1242 CG8080-RA 438..1242 821..17 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-RE 1402 CG8080-RE 454..1259 821..16 4030 100 Minus
CG8080-RD 1749 CG8080-RD 801..1606 821..16 4030 100 Minus
CG8080-RC 1793 CG8080-RC 845..1650 821..16 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9090083..9090487 121..525 2025 100 Plus
2R 25286936 2R 9090540..9090749 521..730 1050 100 Plus
2R 25286936 2R 9089917..9090021 16..120 525 100 Plus
2R 25286936 2R 9090810..9090901 730..821 460 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:34:50 has no hits.

BS05808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:00 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-PA 438..1242 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:46 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-PA 438..1242 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:11:03 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-RC 845..1650 16..821 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:45 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-RC 845..1650 16..821 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:45 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9090811..9090901 731..821 100   Plus
2R 9089917..9090021 16..120 100 <- Plus
2R 9090083..9090485 121..523 100 <- Plus
2R 9090543..9090749 524..730 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:11:03 Download gff for BS05808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4977422..4977526 16..120 100 <- Plus
arm_2R 4977588..4977990 121..523 100 <- Plus
arm_2R 4978048..4978254 524..730 100 <- Plus
arm_2R 4978316..4978406 731..821 100   Plus

BS05808.5prime Sequence

902 bp (704 high quality bases) assembled on 2005-12-03

> BS05808.5prime
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGG
TGCTGGACCACAGGACGTGGTGACAAGACAAATGCTCCGGACTGTGCGTC
AGCACGGGCACGGGCTCANCATCCTGGCACACAGCATCATCGCATCACAA
GC

BS05808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-PA 1242 CG8080-RA 1..795 17..811 3975 100 Plus
CG8080-PA 1242 CG8080-RA 816..869 829..882 251 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-RA 1808 CG8080-RA 422..1313 16..902 4324 99.3 Plus
CG8080-RB 1708 CG8080-RB 334..1213 16..902 4134 98 Plus
CG8080-RE 1402 CG8080-RE 57..907 57..902 4119 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9091407..9091655 303..55 1245 100 Minus
2R 25286936 2R 9090810..9091056 545..299 1235 100 Minus
2R 25286936 2R 9090540..9090749 754..545 1050 100 Minus
2R 25286936 2R 9090330..9090487 902..750 529 96.2 Minus
2R 25286936 2R 9092432..9092472 56..16 205 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:18:47 has no hits.

BS05808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:01 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-PA 1..891 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:48 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-PA 1..891 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:41 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 422..1313 16..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:00 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 422..1313 16..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:00 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9092432..9092472 16..56 100   Minus
2R 9090330..9090485 752..902 96 <- Minus
2R 9090543..9090749 545..751 100 <- Minus
2R 9090811..9091051 304..544 100 <- Minus
2R 9091407..9091653 57..303 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:41 Download gff for BS05808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4977835..4977990 752..902 96 <- Minus
arm_2R 4978048..4978254 545..751 100 <- Minus
arm_2R 4978316..4978556 304..544 100 <- Minus
arm_2R 4978912..4979158 57..303 100 <- Minus
arm_2R 4979937..4979977 16..56 100   Minus

BS05808.complete Sequence

1274 bp (1274 high quality bases) assembled on 2005-10-27

> BS05808.complete
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGG
TGCTGGACCACCAGGACGTGGTGAACAAGACCAAATGCTCCGGACTGTGC
GTCAGCACGGGCACGGGCTCAACATCCTGGCACACCAGCATCAATCGCAT
CACAAGCCGAGATGTGGACGACCTGTTGCGTTCCCTGCCCGACGGCGATT
CAAAGAACGTGATGATGCTACGACAAAATGCAGAGGAGATCGCCCAGCGG
TACAACCAAGGCCTGCTCTTCGCGCCAGACGACCCGCGCCTCTGCTATTC
CATCCGGGAGCAAATCTGCGTGGGCGTGTGGCCTTCGCCAAAGACTTTTA
AGGAGCGCGATTTTGTGCAGACCGTGTTTGTCAAGTCGCATTGCATCGAT
GCCAACCTGGTTATAGATGGCAGCATTTCGTTCCCCTTCAACGATGGCGC
CAAGGCTTTGCTAGAGGTTCACCCAGAAGATGCCCTTCTGACAATCGCTT
TAGACTGAAAGCTTTCTAGACCAT

BS05808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-RA 1242 CG8080-PA 1..1242 17..1258 6210 100 Plus
CG8080-RE 1242 CG8080-PE 41..1242 57..1258 6010 100 Plus
CG8080-RB 1230 CG8080-PB 1..1230 17..1258 5995 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-RA 1808 CG8080-RA 422..1665 16..1259 6220 100 Plus
CG8080-RE 1402 CG8080-RE 57..1259 57..1259 6015 100 Plus
CG8080-RB 1708 CG8080-RB 334..1565 16..1259 6005 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9090083..9090487 1154..750 2025 100 Minus
2R 25286936 2R 9091407..9091655 303..55 1245 100 Minus
2R 25286936 2R 9090810..9091056 545..299 1235 100 Minus
2R 25286936 2R 9090540..9090749 754..545 1050 100 Minus
2R 25286936 2R 9089917..9090021 1259..1155 525 100 Minus
2R 25286936 2R 9092432..9092472 56..16 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:54 has no hits.

BS05808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:06 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 1..1242 17..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:39 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 498..1741 16..1259 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:45 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 428..1663 22..1257 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:06 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 498..1741 16..1259 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:57 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
CG8080-RA 428..1663 22..1257 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:57 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9091407..9091653 57..303 100 <- Minus
2R 9092432..9092466 22..56 100   Minus
2R 9090543..9090749 545..751 100 <- Minus
2R 9090811..9091051 304..544 100 <- Minus
2R 9089919..9090021 1155..1257 100 <- Minus
2R 9090083..9090485 752..1154 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:45 Download gff for BS05808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4977588..4977990 752..1154 100 <- Minus
arm_2R 4977424..4977526 1155..1257 100 <- Minus
arm_2R 4978048..4978254 545..751 100 <- Minus
arm_2R 4978316..4978556 304..544 100 <- Minus
arm_2R 4978912..4979158 57..303 100 <- Minus
arm_2R 4979937..4979971 22..56 100   Minus

BS05808.pep Sequence

Translation from 16 to 1257

> BS05808.pep
MLKSKQLLQQFSKEYAKYTPTNFKLKRALVVTKLSRYEFEQLRHPELSPD
QLQQKLRDRGTDVEMVLHLHKVHKDFERRVVQSFQDVGCEVKLSSRLEFR
SSLSKDVMSWADVIVPVGGDGTFLLSAGRASPLFALSQQKTPIVGFNSDP
LHSEGRLMLPKHYSDNPADAVSRIKSGDFKWMHRSRVRTTMLGSNGNIPE
PTDLFRHTEVKMEQVSTAPEMLDQDMAYKYKAKMKRVLPYLALNEVFIGE
HLSARVSHLQLVLDHQDVVNKTKCSGLCVSTGTGSTSWHTSINRITSRDV
DDLLRSLPDGDSKNVMMLRQNAEEIAQRYNQGLLFAPDDPRLCYSIREQI
CVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLE
VHPEDALLTIALD*

BS05808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8080-PA 413 CG8080-PA 1..413 1..413 2142 100 Plus
CG8080-PB 409 CG8080-PB 1..409 1..413 2107 99 Plus
CG8080-PC 408 CG8080-PC 1..408 1..413 2101 98.8 Plus
CG8080-PE 413 CG8080-PE 1..413 1..413 2078 97.1 Plus
CG8080-PD 409 CG8080-PD 1..409 1..413 2043 96.1 Plus