Clone Sequence Records
BS05808.3prime Sequence
821 bp (642 high quality bases) assembled on 2005-12-03
> BS05808.3prime
ATGGTCTAGAAAGCTTTCAGTCTAAAGCGATTGTCAGAAGGGCATCTTCT
GGGTGAACCTCTAGCAAAGCCTTGGCGCCATCGTTGAAGGGGAACGAAAT
GCTGCCATCTATAACCAGGTTGGCATCGATGCAATGCGACTTGACAAACA
CGGTCTGCACAAAATCGCGCTCCTTAAAAGTCTTTGGCGAAGGCCACACG
CCCACGCAGATTTGCTCCCGGATGGAATAGCAGAGGCGCGGGTCGTCTGG
CGCGAAGAGCAGGCCTTGGTTGTACCGCTGGGCGATCTCCTCTGCATTTT
GTCGTAGCATCATCACGTTCTTTGAATCGCCGTCGGGCAGGGAACGCAAC
AGGTCGTCCACATCTCGGCTTGTGATGCGATTGATGCTGGTGTGCCAGGA
TGTTGAGCCCGTGCCCGTGCTGACGCACAGTCCGGAGCATTTGGTCTTGT
TCACCACGTCCTGGTGGTCCAGCACCAGTTGCAAGTGGGACACTCGGGCC
GATAGATGCTCGCCAATAAATACCTCGTTCAAAGCCAAGTAAGGAAGAAC
ACGTTTCATCTTGGCCTTGTACTTGTAGGCCATGTCCTGGTCCAGCATTT
CGGGTGCGGTGCTGACCTGCTCCATCTTGACCTCCGTGTGGCGGAAAAGG
TCAGTCGGCTCCGGAATATTGCCGTTGCTACCAAGCATCGTAGTCCGCAC
CCTCGAGCGATGCATCCACTTGAAATCTCCGCTCTTGATGCGGGAAACGG
CGTCGGCCGGATTATCCGAGTAGTGCTTGGGCAGCATGAGTCGGCCCTCC
GAGTGAAGCGGATCCGAGTTG
BS05808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-PA | 1242 | CG8080-RA | 438..1242 | 821..17 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-RE | 1402 | CG8080-RE | 454..1259 | 821..16 | 4030 | 100 | Minus |
CG8080-RD | 1749 | CG8080-RD | 801..1606 | 821..16 | 4030 | 100 | Minus |
CG8080-RC | 1793 | CG8080-RC | 845..1650 | 821..16 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9090083..9090487 | 121..525 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 9090540..9090749 | 521..730 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 9089917..9090021 | 16..120 | 525 | 100 | Plus |
2R | 25286936 | 2R | 9090810..9090901 | 730..821 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:34:50 has no hits.
BS05808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:00 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-PA | 438..1242 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:46 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-PA | 438..1242 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:11:03 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RC | 845..1650 | 16..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:45 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RC | 845..1650 | 16..821 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:45 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9090811..9090901 | 731..821 | 100 | | Plus |
2R | 9089917..9090021 | 16..120 | 100 | <- | Plus |
2R | 9090083..9090485 | 121..523 | 100 | <- | Plus |
2R | 9090543..9090749 | 524..730 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:11:03 Download gff for
BS05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4977422..4977526 | 16..120 | 100 | <- | Plus |
arm_2R | 4977588..4977990 | 121..523 | 100 | <- | Plus |
arm_2R | 4978048..4978254 | 524..730 | 100 | <- | Plus |
arm_2R | 4978316..4978406 | 731..821 | 100 | | Plus |
BS05808.5prime Sequence
902 bp (704 high quality bases) assembled on 2005-12-03
> BS05808.5prime
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGG
TGCTGGACCACAGGACGTGGTGACAAGACAAATGCTCCGGACTGTGCGTC
AGCACGGGCACGGGCTCANCATCCTGGCACACAGCATCATCGCATCACAA
GC
BS05808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-PA | 1242 | CG8080-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG8080-PA | 1242 | CG8080-RA | 816..869 | 829..882 | 251 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-RA | 1808 | CG8080-RA | 422..1313 | 16..902 | 4324 | 99.3 | Plus |
CG8080-RB | 1708 | CG8080-RB | 334..1213 | 16..902 | 4134 | 98 | Plus |
CG8080-RE | 1402 | CG8080-RE | 57..907 | 57..902 | 4119 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9091407..9091655 | 303..55 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 9090810..9091056 | 545..299 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 9090540..9090749 | 754..545 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 9090330..9090487 | 902..750 | 529 | 96.2 | Minus |
2R | 25286936 | 2R | 9092432..9092472 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:18:47 has no hits.
BS05808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:01 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-PA | 1..891 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:48 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-PA | 1..891 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:41 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 422..1313 | 16..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:00 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 422..1313 | 16..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:00 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9092432..9092472 | 16..56 | 100 | | Minus |
2R | 9090330..9090485 | 752..902 | 96 | <- | Minus |
2R | 9090543..9090749 | 545..751 | 100 | <- | Minus |
2R | 9090811..9091051 | 304..544 | 100 | <- | Minus |
2R | 9091407..9091653 | 57..303 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:41 Download gff for
BS05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4977835..4977990 | 752..902 | 96 | <- | Minus |
arm_2R | 4978048..4978254 | 545..751 | 100 | <- | Minus |
arm_2R | 4978316..4978556 | 304..544 | 100 | <- | Minus |
arm_2R | 4978912..4979158 | 57..303 | 100 | <- | Minus |
arm_2R | 4979937..4979977 | 16..56 | 100 | | Minus |
BS05808.complete Sequence
1274 bp (1274 high quality bases) assembled on 2005-10-27
> BS05808.complete
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGG
TGCTGGACCACCAGGACGTGGTGAACAAGACCAAATGCTCCGGACTGTGC
GTCAGCACGGGCACGGGCTCAACATCCTGGCACACCAGCATCAATCGCAT
CACAAGCCGAGATGTGGACGACCTGTTGCGTTCCCTGCCCGACGGCGATT
CAAAGAACGTGATGATGCTACGACAAAATGCAGAGGAGATCGCCCAGCGG
TACAACCAAGGCCTGCTCTTCGCGCCAGACGACCCGCGCCTCTGCTATTC
CATCCGGGAGCAAATCTGCGTGGGCGTGTGGCCTTCGCCAAAGACTTTTA
AGGAGCGCGATTTTGTGCAGACCGTGTTTGTCAAGTCGCATTGCATCGAT
GCCAACCTGGTTATAGATGGCAGCATTTCGTTCCCCTTCAACGATGGCGC
CAAGGCTTTGCTAGAGGTTCACCCAGAAGATGCCCTTCTGACAATCGCTT
TAGACTGAAAGCTTTCTAGACCAT
BS05808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-RA | 1242 | CG8080-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
CG8080-RE | 1242 | CG8080-PE | 41..1242 | 57..1258 | 6010 | 100 | Plus |
CG8080-RB | 1230 | CG8080-PB | 1..1230 | 17..1258 | 5995 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-RA | 1808 | CG8080-RA | 422..1665 | 16..1259 | 6220 | 100 | Plus |
CG8080-RE | 1402 | CG8080-RE | 57..1259 | 57..1259 | 6015 | 100 | Plus |
CG8080-RB | 1708 | CG8080-RB | 334..1565 | 16..1259 | 6005 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9090083..9090487 | 1154..750 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 9091407..9091655 | 303..55 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 9090810..9091056 | 545..299 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 9090540..9090749 | 754..545 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 9089917..9090021 | 1259..1155 | 525 | 100 | Minus |
2R | 25286936 | 2R | 9092432..9092472 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:00:54 has no hits.
BS05808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:06 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 1..1242 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:39 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 498..1741 | 16..1259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:45 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 428..1663 | 22..1257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:06 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 498..1741 | 16..1259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:57 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8080-RA | 428..1663 | 22..1257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:57 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9091407..9091653 | 57..303 | 100 | <- | Minus |
2R | 9092432..9092466 | 22..56 | 100 | | Minus |
2R | 9090543..9090749 | 545..751 | 100 | <- | Minus |
2R | 9090811..9091051 | 304..544 | 100 | <- | Minus |
2R | 9089919..9090021 | 1155..1257 | 100 | <- | Minus |
2R | 9090083..9090485 | 752..1154 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:45 Download gff for
BS05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4977588..4977990 | 752..1154 | 100 | <- | Minus |
arm_2R | 4977424..4977526 | 1155..1257 | 100 | <- | Minus |
arm_2R | 4978048..4978254 | 545..751 | 100 | <- | Minus |
arm_2R | 4978316..4978556 | 304..544 | 100 | <- | Minus |
arm_2R | 4978912..4979158 | 57..303 | 100 | <- | Minus |
arm_2R | 4979937..4979971 | 22..56 | 100 | | Minus |
BS05808.pep Sequence
Translation from 16 to 1257
> BS05808.pep
MLKSKQLLQQFSKEYAKYTPTNFKLKRALVVTKLSRYEFEQLRHPELSPD
QLQQKLRDRGTDVEMVLHLHKVHKDFERRVVQSFQDVGCEVKLSSRLEFR
SSLSKDVMSWADVIVPVGGDGTFLLSAGRASPLFALSQQKTPIVGFNSDP
LHSEGRLMLPKHYSDNPADAVSRIKSGDFKWMHRSRVRTTMLGSNGNIPE
PTDLFRHTEVKMEQVSTAPEMLDQDMAYKYKAKMKRVLPYLALNEVFIGE
HLSARVSHLQLVLDHQDVVNKTKCSGLCVSTGTGSTSWHTSINRITSRDV
DDLLRSLPDGDSKNVMMLRQNAEEIAQRYNQGLLFAPDDPRLCYSIREQI
CVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLE
VHPEDALLTIALD*
BS05808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8080-PA | 413 | CG8080-PA | 1..413 | 1..413 | 2142 | 100 | Plus |
CG8080-PB | 409 | CG8080-PB | 1..409 | 1..413 | 2107 | 99 | Plus |
CG8080-PC | 408 | CG8080-PC | 1..408 | 1..413 | 2101 | 98.8 | Plus |
CG8080-PE | 413 | CG8080-PE | 1..413 | 1..413 | 2078 | 97.1 | Plus |
CG8080-PD | 409 | CG8080-PD | 1..409 | 1..413 | 2043 | 96.1 | Plus |