Clone Sequence Records
BS05809.3prime Sequence
879 bp (769 high quality bases) assembled on 2005-12-03
> BS05809.3prime
ATGGTCTAGAAAGCTTCTAGTAGCTTCGGGCCAGTTCTGCATGCATCACC
GCCAGCAGCTGCCTTTCCATGTCGCTCAGCGATCCAAATTCGGCTCCAAA
GTCGCGCAGCAGGTGCTTTAGATCGCACATTTTACGCTCCACCCAGGCGC
ACGTAATCTCCGCCAGCGCATACTGCTGCTGTTCGGGCACAAATGCTCCC
GGACGCTCCGCGGATCCACCGTCGTCCGCCGAACAGGGGAGCGACTCGAA
CTGCGCCAGGTTGTAGTAGTACTCGATCAGCTTGATGTGGGCGGGTGACT
GGCGTGCGGGAGGCAGGTTCAAATGGACTAGGAGCAGCAGACGCAGCACC
TCAACGCGCCGCAATAGTTCACCGTACATGCGAGCACCGCGTCGCTCGTA
AACATTGTCCACAATGTCGTCGTAATGCTGCAGTGCACTGCGAAAATCGC
CGCGCTGGCCACTCGTTTCGGCGCTGATTTCCAGGTCATGGATCTGATGG
GTGGGCGAGGCAAAGCTGCTGGTGCTGTCCAGCTGCCGCTGCAGCTGCTT
CAACTCGCGCAGAATGGCCGCCTTGAAGACGCAACCGTCCACCGCTCGAT
CCGCCGCACGGTGATAGCAGTGCACCGCTCCCTCCCGAAATCCCGAGTGG
CGGGTGCGCAGATGCAGTCGCCCGGACTCGTTGTGCGCCGCTAGGAAGGA
TCTAGCTGCCCGCAGATAGGCCTCCGATTCGCGCTGCGGTGCGCCGCCGT
AGGACTCGCACTTGGCATAGCCAATGTGGCACATGGCCGCATACTGCTGT
ATGCCCGACTCCTCGAAGCTGTAGGCCAGTCGCTGGAAGTCCGCCTGCAC
ATCGACCACGCTGGGCGCAAAGCGTTTGA
BS05809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PA | 1038 | CG8134-RA | 176..1038 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 279..1142 | 879..16 | 4320 | 100 | Minus |
| CG8134-RA | 1421 | CG8134-RA | 279..1142 | 879..16 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705452 | 875..16 | 4300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:01:03 has no hits.
BS05809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:02 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 177..1038 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:49 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 177..1038 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:12 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 280..1151 | 3..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:46 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 280..1151 | 3..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:46 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704590..15705461 | 3..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:12 Download gff for
BS05809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598623..15599494 | 3..878 | 99 | | Minus |
BS05809.5prime Sequence
805 bp (804 high quality bases) assembled on 2005-12-03
> BS05809.5prime
GAAGTTATCAGTCGACATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCG
GCGGATCCTCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCAC
CAACTGGAGCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAG
GGCCTCCAGCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCT
TTGCGCCCAGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTAC
AGCTTCGAGGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGG
CTATGCCAAGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGG
CCTATCTGCGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGG
CGACTGCATCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCA
CTGCTATCACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGG
CGGCCATTCTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACC
AGCAGCTTTGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGC
CGAAACGAGTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACG
ACGACATTGTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGT
GAACTATTGCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTT
GAACCTGCCTCCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGT
ACTAC
BS05809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PA | 1038 | CG8134-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..892 | 16..805 | 3950 | 100 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..892 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705202 | 196..805 | 3050 | 100 | Plus |
| X | 23542271 | X | 15704227..15704406 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:19:28 has no hits.
BS05809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:03 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:50 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:50 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..892 | 11..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:49 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..892 | 11..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:49 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704223..15704406 | 11..195 | 98 | -> | Plus |
| X | 15704593..15705202 | 196..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:50 Download gff for
BS05809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598256..15598439 | 11..195 | 98 | -> | Plus |
| arm_X | 15598626..15599235 | 196..805 | 100 | | Plus |
BS05809.complete Sequence
1070 bp (1070 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635239
> BS05809.complete
GAAGTTATCAGTCGACATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCG
GCGGATCCTCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCAC
CAACTGGAGCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAG
GGCCTCCAGCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCT
TTGCGCCCAGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTAC
AGCTTCGAGGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGG
CTATGCCAAGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGG
CCTATCTGCGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGG
CGACTGCATCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCA
CTGCTATCACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGG
CGGCCATTCTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACC
AGCAGCTTTGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGC
CGAAACGAGTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACG
ACGACATTGTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGT
GAACTATTGCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTT
GAACCTGCCTCCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGT
ACTACTACAACCTGGCGCAGTTCGAGTCGCTCCCCTGTTCGGCGGACGAC
GGTGGATCCGCGGAGCGTCCGGGAGCATTTGTGCCCGAACAGCAGCAGTA
TGCGCTGGCGGAGATTACGTGCGCCTGGGTGGAGCGTAAAATGTGCGATC
TAAAGCACCTGCTGCGCGACTTTGGAGCCGAATTTGGATCGCTGAGCGAC
ATGGAAAGGCAGCTGCTGGCGGTGATGCATGCAGAACTGGCCCGAAGCTA
CTAGAAGCTTTCTAGACCAT
BS05809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1038 | CG8134-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| CG8134-RA | 1038 | CG8134-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..1142 | 16..1055 | 5200 | 100 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..1142 | 16..1055 | 5200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705452 | 196..1055 | 4300 | 100 | Plus |
| X | 23542271 | X | 15704227..15704406 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:32 has no hits.
BS05809.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:07 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:43 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..1151 | 11..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:43 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 104..1141 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:07 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..1151 | 11..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:29 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 104..1141 | 17..1054 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:29 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704228..15704406 | 17..195 | 100 | -> | Plus |
| X | 15704593..15705451 | 196..1054 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:43 Download gff for
BS05809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598261..15598439 | 17..195 | 100 | -> | Plus |
| arm_X | 15598626..15599484 | 196..1054 | 100 | | Plus |
BS05809.pep Sequence
Translation from 16 to 1053
> BS05809.pep
MDKLRGGSLGGGGSSSGAPSTAPGHEHHQLEQYQYPKNLIEQYLRASSKI
KKFERAGFFKRFAPSVVDVQADFQRLAYSFEESGIQQYAAMCHIGYAKCE
SYGGAPQRESEAYLRAARSFLAAHNESGRLHLRTRHSGFREGAVHCYHRA
ADRAVDGCVFKAAILRELKQLQRQLDSTSSFASPTHQIHDLEISAETSGQ
RGDFRSALQHYDDIVDNVYERRGARMYGELLRRVEVLRLLLLVHLNLPPA
RQSPAHIKLIEYYYNLAQFESLPCSADDGGSAERPGAFVPEQQQYALAEI
TCAWVERKMCDLKHLLRDFGAEFGSLSDMERQLLAVMHAELARSY*
BS05809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PB | 345 | CG8134-PB | 1..345 | 1..345 | 1798 | 100 | Plus |
| CG8134-PA | 345 | CG8134-PA | 1..345 | 1..345 | 1798 | 100 | Plus |
