Clone Sequence Records
BS05811.3prime Sequence
851 bp (758 high quality bases) assembled on 2005-12-03
> BS05811.3prime
ATGGTCTAGAAAGCTTTTACAGGGCACTGCGTAGAGCGATCACCACTCCC
GTCAGAAGGCCGACCACGCCCACATTCCTGAGTGCGCCTGCTCCATTGAA
GGGTACCTTGTTGCACTTGCTCTCCGTACACAATTCGCACTGATGGGCCT
CCACTTTGGCATTGCACTGGTACTGCATCAGGTGGCTGGCAGCGGTAAAA
CATCCTCGCACTCCAAGTTCATTCCAGACTCCGCTGTAGCACGTTCCATT
GGGGCAGTTGATCAAAGGGAGCGTGTCCGGATATTTGGCCGACCAGCAGC
CGGAAACCTCATTCGAAATGCATGTAATGCACTGGAACTCGCCGGCAGCC
ACATTGCAGCCATTTTCGGAGCAGGAAGTGCAGGCATTGGTTGTAGAGCA
GCCAGCCTCCAAGGTGTTTAGGCACCCTCGGGTAACATTGGTTCCTGAGG
TCATGGTATAACACCCGACTTCCTGGTTGTACTTGGCCTGTCCGCAGGAC
TTCGCATTGGTAGCAACCTGTTGCTCCGCACAGTTCTCGCAAATGATACA
GGAACCGGCCTCTCGTTCGTAGGTCGGACTATTGCAAAAGTCGGAGTTGC
AGACGAGGCAACTGGGATCAGTGCTGTCCGACGCACACTTGATTTCCGTG
GTGGCCGATGTGCAACCACGGGTCATGTTGCTCGCAGACGTTCCGGTGGT
GAAGCACCCGGCATCGATTTGACTACATCCCGCGACCAAGGTATTTGAGA
CCGCATTGCAGTTCTCTCCTGAGCAATTATAGCACTGGCGACGATTGGCG
GGGAATAGTCCCACATTGCACAGGGATGCCAAGCATGAAGAGCACGTGAA
T
BS05811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PA | 1278 | CG10650-RA | 447..1278 | 848..17 | 4110 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 527..1358 | 848..17 | 4130 | 99.8 | Minus |
CG10650-RA | 1527 | CG10650-RA | 527..1358 | 848..17 | 4130 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994137..18994762 | 223..848 | 3100 | 99.7 | Plus |
2L | 23513712 | 2L | 18993786..18993991 | 17..222 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:15:55 has no hits.
BS05811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:06 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 444..1278 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:55 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 444..1278 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:34 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 524..1358 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:02 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 524..1358 | 17..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:02 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18993786..18993991 | 17..222 | 100 | <- | Plus |
2L | 18994137..18994765 | 223..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:34 Download gff for
BS05811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18993786..18993991 | 17..222 | 100 | <- | Plus |
arm_2L | 18994137..18994765 | 223..851 | 99 | | Plus |
BS05811.5prime Sequence
866 bp (864 high quality bases) assembled on 2005-12-03
> BS05811.5prime
GAAGTTATCAGTCGACATGAGAGAATACAGCCTATGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAG
BS05811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PA | 1278 | CG10650-RA | 1..850 | 17..866 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 80..930 | 16..866 | 4240 | 99.9 | Plus |
CG10650-RA | 1527 | CG10650-RA | 80..930 | 16..866 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994359..18995023 | 866..202 | 3325 | 100 | Minus |
2L | 23513712 | 2L | 18995601..18995712 | 204..93 | 560 | 100 | Minus |
2L | 23513712 | 2L | 18995779..18995855 | 92..16 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:55:00 has no hits.
BS05811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:07 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:55:56 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:04 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 75..930 | 10..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:04 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 75..930 | 10..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:04 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18994359..18995021 | 204..866 | 100 | <- | Minus |
2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
2L | 18995779..18995858 | 10..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:04 Download gff for
BS05811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18994359..18995021 | 204..866 | 100 | <- | Minus |
arm_2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
arm_2L | 18995779..18995858 | 10..92 | 95 | | Minus |
BS05811.complete Sequence
1310 bp assembled on 2009-02-12
> BS05811.complete
GAAGTTATCAGTCGACATGAGAGAATACAGCCTATGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTT
GGAGGCTGGCTGCTCTACAACCAATGCCTGCACTTCCTGCTCCGAAAATG
GCTGCAATGTGGCTGCCGGCGAGTTCCAGTGCATTACATGCATTTCGAAT
GAGGTTTCCGGCTGCTGGTCGGCCAAATATCCGGACACGCTCCCTTTGAT
CAACTGCCCCAATGGAACGTGCTACAGCGGAGTCTGGAATGAACTTGGAG
TGCGAGGATGTTTTACCGCTGCCAGCCACCTGATGCAGTACCAGTGCAAT
GCCAAAGTGGAGGCCCATCAGTGCGAATTGTGTACGGAGAGCAAGTGCAA
CAAGGTACCCTTCAATGGAGCAGGCGCACTCAGGAATGTGGGCGTGGTCG
GCCTTCTGACGGGAGTGGTGATCGCTCTACGCAGTGCCCTGTAAAAGCTT
TCTAGACCAT
BS05811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1278 | CG10650-PB | 1..1278 | 17..1294 | 6375 | 99.9 | Plus |
CG10650-RA | 1278 | CG10650-PA | 1..1278 | 17..1294 | 6375 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 80..1358 | 16..1294 | 6380 | 99.9 | Plus |
CG10650-RA | 1527 | CG10650-RA | 80..1358 | 16..1294 | 6380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994137..18995023 | 1088..202 | 4435 | 100 | Minus |
2L | 23513712 | 2L | 18993786..18993991 | 1294..1089 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 18995601..18995712 | 204..93 | 560 | 100 | Minus |
2L | 23513712 | 2L | 18995779..18995855 | 92..16 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:28 has no hits.
BS05811.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:36 Download gff for
BS05811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 77..1352 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:34 Download gff for
BS05811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 81..1356 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:12 Download gff for
BS05811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 81..1356 | 17..1292 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:12 Download gff for
BS05811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
2L | 18995779..18995854 | 17..92 | 98 | | Minus |
2L | 18993788..18993991 | 1089..1292 | 100 | <- | Minus |
2L | 18994137..18995021 | 204..1088 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:34 Download gff for
BS05811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18993788..18993991 | 1089..1292 | 100 | <- | Minus |
arm_2L | 18994137..18995021 | 204..1088 | 100 | <- | Minus |
arm_2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
arm_2L | 18995779..18995854 | 17..92 | 98 | | Minus |
BS05811.pep Sequence
Translation from 16 to 1293
> BS05811.pep
MREYSLCMIVIAAFIASQLDSTSALQCYSCTSTTNDTGNCLTSPSTQTSI
ECDNECYTLINAGTLTRGCLINGTACTLPSCSTCKEDNCNLNLVCQQCLG
EANCATTNVTDTQYNAVCPNNGQVCVNQLNDNKTVTRQCGDPCAAGTEST
CSSCSASLCNVGLFPANRRQCYNCSGENCNAVSNTLVAGCSQIDAGCFTT
GTSASNMTRGCTSATTEIKCASDSTDPSCLVCNSDFCNSPTYEREAGSCI
ICENCAEQQVATNAKSCGQAKYNQEVGCYTMTSGTNVTRGCLNTLEAGCS
TTNACTSCSENGCNVAAGEFQCITCISNEVSGCWSAKYPDTLPLINCPNG
TCYSGVWNELGVRGCFTAASHLMQYQCNAKVEAHQCELCTESKCNKVPFN
GAGALRNVGVVGLLTGVVIALRSAL*
BS05811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PB | 425 | CG10650-PB | 1..425 | 1..425 | 2339 | 100 | Plus |
CG10650-PA | 425 | CG10650-PA | 1..425 | 1..425 | 2339 | 100 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2134..2536 | 25..397 | 268 | 25.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1291..1703 | 25..403 | 266 | 25.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2414..2790 | 56..397 | 252 | 25.8 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2555..2965 | 25..421 | 245 | 24.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2372 | 27..395 | 233 | 24.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1202..1613 | 25..395 | 227 | 24.6 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1716..2116 | 25..397 | 222 | 23.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 453..849 | 25..395 | 217 | 24.9 | Plus |
CG15773-PA | 478 | CG15773-PA | 30..363 | 92..396 | 216 | 25.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 866..1273 | 22..397 | 212 | 24.3 | Plus |
CG15773-PB | 319 | CG15773-PB | 30..315 | 92..354 | 211 | 27.4 | Plus |
CG15773-PA | 478 | CG15773-PA | 12..445 | 6..398 | 200 | 24.8 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2628..2947 | 20..314 | 193 | 23 | Plus |
CG13492-PD | 2979 | CG13492-PD | 108..524 | 25..395 | 156 | 21.5 | Plus |