Clone Sequence Records
BS05817.3prime Sequence
944 bp (778 high quality bases) assembled on 2005-12-03
> BS05817.3prime
ATGGTCTAGAAAGCTTCTATTCCTGTTGGGCGCACTTGTCGTAGTTGGTG
ACCAGTTGGCGGTACAGATTGGATACCCTGGCGCTCTTGTGGCACACGGT
TCCACCACCACGATGCAACTGACCTTCTTGCCGGTTGATGTCGCCCACAC
AAATCCAATCTCCGCCGCCAACTCGCCAATGGTAGATCAAAATGCCTGTG
GGACGAGATACCGCCCACTTGGAGTGATCTTGTGTGGTCTTAAAGTCCAC
CGATAGCTCCGGATTGGAAATGGATTCCACATTGAGAACCTTATCGGACT
TATCGCAGCTATTCGGTAAGTTGCCGGCACCGTCGCGCCACGCCTCCACA
AAAAGACTGACATCCAGAGTGGGTGCGACCACATCGGCGTACAGCTCCAC
ATTGGCGCGTCCACTCTTGCCAAACAGCCGGAACTTCTTGCCGTCCAAGC
TGCGCACCTCCAAGTCCTTCTGGAACGGTGATTCCGTCCGCCACTGACCA
TGCAGAGCCCTTTCCAGGCTCGGGAACAGCTCATCGGAGCGAGTGGCCAG
CGGGTTGCGTTGATAGTAGAAGTGCGGTTCATTGTACACCAGAATCTGAC
CAACCTTCTCCAAATCCTCGCCCTTCAGTGTGACGCAGAGCATGCTCTGT
GCGTACTGCTCGCCGGATGTGGGATAGCTGTAGTCCGGAATTGTTGGAAA
TTTGGGCACCGAGTGGACAATCCAAATAGCCGTCTCCCCATCACTGGCCA
CCACTCCTTTGGCATGACCACCGCTGCTGAAAACCGTGCCATTCGGCTGT
TGATCGTTGTAGGCGGCCAGCAGAGTGTGGCTGGGATCGTCGTTCAAGGG
GTTAAGGGTCTGGGCAGGCAGCGATAGGGGATCACTAATGAACTTTCCCG
ACATCTGCCAGGTGTCATAGTTCTGGCTGGTCACGTACAGGTAC
BS05817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7780-PA | 1101 | DNaseII-RA | 174..1101 | 944..17 | 4640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 212..1141 | 944..15 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020145..18021074 | 944..15 | 4650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:20:48 has no hits.
BS05817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:15 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 174..1101 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:06 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 174..1101 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:54 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 212..1150 | 7..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:54 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 212..1150 | 7..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:54 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18020145..18021083 | 7..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:54 Download gff for
BS05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845867..13846805 | 7..944 | 99 | | Minus |
BS05817.5prime Sequence
839 bp (836 high quality bases) assembled on 2005-12-03
> BS05817.5prime
GAAGTTATCAGTCGACATGCGATCTCTGTGCTTCGTTTTGCTGTTCGTTT
GGTTTTTCTACCAAAACGAAGCTAAGTCTAAGGTTTCCTGTAAGGATGAA
GCTGGAAACGATGTAGATTGGTGGCACCTTTACAAACTGCCCAAGCACTA
CCAGCACAACGATTTGGGCAAGGACACCAGTGGCTTGAAGTACCTGTACG
TGACCAGCCAGAACTATGACACCTGGCAGATGTCGGGAAAGTTCATTAGT
GATCCCCTATCGCTGCCTGCCCAGACCCTTAACCCCTTGAACGACGATCC
CAGCCACACTCTGCTGGCCGCCTACAACGATCAACAGCCGAATGGCACGG
TTTTCAGCAGCGGTGGTCATGCCAAAGGAGTGGTGGCCAGTGATGGGGAG
ACGGCTATTTGGATTGTCCACTCGGTGCCCAAATTTCCAACAATTCCGGA
CTACAGCTATCCCACATCCGGCGAGCAGTACGCACAGAGCATGCTCTGCG
TCACACTGAAGGGCGAGGATTTGGAGAAGGTTGGTCAGATTCTGGTGTAC
AATGAACCGCACTTCTACTATCAACGCAACCCGCTGGCCACTCGCTCCGA
TGAGCTGTTCCCGAGCCTGGAAAGGGCTCTGCATGGTCAGTGGCGGACGG
AATCACCGTTCCAGAAGGACTTGGAGGTGCGCAGCTTGGACGGCAAGAAG
TTCCGGCTGTTTGGCAAGAGTGGACGCGCCAATGTGGAGCTGTACGCCGA
TGTGGTCGCACCCACTCTGGATGTCAGTCTTTTTGTGGAGGCGTGGCGCG
ACGGTGCCGGCAACTTACCGAATAGCTGCGATAAGTCCG
BS05817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7780-PA | 1101 | DNaseII-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 39..861 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020075..18020794 | 120..839 | 3600 | 100 | Plus |
| 3R | 32079331 | 3R | 18019413..18019518 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:48:56 has no hits.
BS05817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:16 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:07 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:56 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..861 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:10 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..861 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:10 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18019413..18019516 | 17..120 | 100 | -> | Plus |
| 3R | 18020076..18020794 | 121..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:56 Download gff for
BS05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845135..13845238 | 17..120 | 100 | -> | Plus |
| arm_3R | 13845798..13846516 | 121..839 | 100 | | Plus |
BS05817.complete Sequence
1133 bp (1133 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635241
> BS05817.complete
GAAGTTATCAGTCGACATGCGATCTCTGTGCTTCGTTTTGCTGTTCGTTT
GGTTTTTCTACCAAAACGAAGCTAAGTCTAAGGTTTCCTGTAAGGATGAA
GCTGGAAACGATGTAGATTGGTGGCACCTTTACAAACTGCCCAAGCACTA
CCAGCACAACGATTTGGGCAAGGACACCAGTGGCTTGAAGTACCTGTACG
TGACCAGCCAGAACTATGACACCTGGCAGATGTCGGGAAAGTTCATTAGT
GATCCCCTATCGCTGCCTGCCCAGACCCTTAACCCCTTGAACGACGATCC
CAGCCACACTCTGCTGGCCGCCTACAACGATCAACAGCCGAATGGCACGG
TTTTCAGCAGCGGTGGTCATGCCAAAGGAGTGGTGGCCAGTGATGGGGAG
ACGGCTATTTGGATTGTCCACTCGGTGCCCAAATTTCCAACAATTCCGGA
CTACAGCTATCCCACATCCGGCGAGCAGTACGCACAGAGCATGCTCTGCG
TCACACTGAAGGGCGAGGATTTGGAGAAGGTTGGTCAGATTCTGGTGTAC
AATGAACCGCACTTCTACTATCAACGCAACCCGCTGGCCACTCGCTCCGA
TGAGCTGTTCCCGAGCCTGGAAAGGGCTCTGCATGGTCAGTGGCGGACGG
AATCACCGTTCCAGAAGGACTTGGAGGTGCGCAGCTTGGACGGCAAGAAG
TTCCGGCTGTTTGGCAAGAGTGGACGCGCCAATGTGGAGCTGTACGCCGA
TGTGGTCGCACCCACTCTGGATGTCAGTCTTTTTGTGGAGGCGTGGCGCG
ACGGTGCCGGCAACTTACCGAATAGCTGCGATAAGTCCGATAAGGTTCTC
AATGTGGAATCCATTTCCAATCCGGAGCTATCGGTGGACTTTAAGACCAC
ACAAGATCACTCCAAGTGGGCGGTATCTCGTCCCACAGGCATTTTGATCT
ACCATTGGCGAGTTGGCGGCGGAGATTGGATTTGTGTGGGCGACATCAAC
CGGCAAGAAGGTCAGTTGCATCGTGGTGGTGGAACCGTGTGCCACAAGAG
CGCCAGGGTATCCAATCTGTACCGCCAACTGGTCACCAACTACGACAAGT
GCGCCCAACAGGAATAGAAGCTTTCTAGACCAT
BS05817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1101 | CG7780-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 39..1141 | 17..1119 | 5515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020075..18021074 | 120..1119 | 5000 | 100 | Plus |
| 3R | 32079331 | 3R | 18019413..18019518 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:06 has no hits.
BS05817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:55 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:23 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 37..1148 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:02 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..1139 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:55 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 37..1148 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:55 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..1139 | 17..1117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:55 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18019413..18019516 | 17..120 | 100 | -> | Plus |
| 3R | 18020076..18021072 | 121..1117 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:02 Download gff for
BS05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845135..13845238 | 17..120 | 100 | -> | Plus |
| arm_3R | 13845798..13846794 | 121..1117 | 100 | | Plus |
BS05817.pep Sequence
Translation from 16 to 1116
> BS05817.pep
MRSLCFVLLFVWFFYQNEAKSKVSCKDEAGNDVDWWHLYKLPKHYQHNDL
GKDTSGLKYLYVTSQNYDTWQMSGKFISDPLSLPAQTLNPLNDDPSHTLL
AAYNDQQPNGTVFSSGGHAKGVVASDGETAIWIVHSVPKFPTIPDYSYPT
SGEQYAQSMLCVTLKGEDLEKVGQILVYNEPHFYYQRNPLATRSDELFPS
LERALHGQWRTESPFQKDLEVRSLDGKKFRLFGKSGRANVELYADVVAPT
LDVSLFVEAWRDGAGNLPNSCDKSDKVLNVESISNPELSVDFKTTQDHSK
WAVSRPTGILIYHWRVGGGDWICVGDINRQEGQLHRGGGTVCHKSARVSN
LYRQLVTNYDKCAQQE*
BS05817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-PA | 366 | CG7780-PA | 1..366 | 1..366 | 1986 | 100 | Plus |
