Clone Sequence Records
BS05819.3prime Sequence
990 bp (769 high quality bases) assembled on 2005-12-03
> BS05819.3prime
ATGGTCTAGAAAGCTTCATGTTCGGTAAAAACGCAAATTCACTGGTGACG
TGTGCCGCTTAAGGTATTGATAAACGAAATTACGGAAAACACGGTTGAAA
TTGCGTATGGAAGGCCAGTGCAGATTGGCGGCATTGTCCCGAGGCGTGTG
CCAGACGTCTGGGAAAGGAGTGGCTACCAAATGCAGCACAGGAACATTCT
CATCTAAAAACGGTCGATGATCATCGTCGACTAGACCACCGCTGACACGA
CTTAAAAACATATTGTTATTGCCCTCCAGCTGGCCGGCAGTGCGCAGAGA
TTTCTCAATCTGCACGAGACTGGAGTGCAGTCCGTCGGTGTTTTCATAAA
AACTGGAGAACTTGGGATTCCGCGCCCCAATTAGATCCAGCAGCACCAGA
ACTTCAATTCGATCTATATTGCGTGGAGCTAGTTGCGCCTGGGAACCACT
GCGTTTGCTAGCCAACTTCGCGGCCAGATGCTTTGATCCGTATACAGAGT
CCGCATCGGTCCACTCCTTAAAGGCCTCCTCGCCATCGAAGAATATGAGC
ATAAGTCCCACATCGCTGCGATTGCGAAACTCTTTCTGCAGATACGCGCC
CAAGGTCTTGGCGGTGTTCAACAGAATGGCACAGGGCACGGCGGAGTCAG
TGGCGCCCACAAAGCCGGGATCATTGGGGAAGTACTTGCTGTCGTAGTGG
CAGGCCAGAGCGAGAAAGTTCTGAGCCTGGGGATTGATTGTGCCCACTAC
GTTGGCAAACGTGAGTTCGCCGAAAACTGGAACTCTCTGCTTGAACTCAT
CCACTTCCGTTTGGAAAGCCAGGCCGTTCAGCGATTGGACCAGGTACTCG
CGCACCTGCTGATGTCCCCGACTGCCAACGACGCGTGGCACCAAAATGGA
GTCCAGGGTGCGGTTGAAATGAACCTCATCGTCGCGCCACTGGGATCCAA
TGTTTCCCGCTGTCGCTTGCTGATGCGACGGCGGGGAGGA
BS05819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32412-PA | 1023 | CG32412-RA | 223..1021 | 816..18 | 3995 | 100 | Minus |
CG32412-PA | 1023 | CG32412-RA | 54..218 | 985..821 | 800 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 89..1056 | 985..18 | 4780 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 550..858 | 1500 | 99 | Plus |
3L | 28110227 | 3L | 5901153..5901360 | 198..405 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 5900920..5901099 | 18..197 | 900 | 100 | Plus |
3L | 28110227 | 3L | 5901416..5901561 | 405..550 | 730 | 100 | Plus |
3L | 28110227 | 3L | 5902157..5902255 | 853..951 | 480 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:58:10 has no hits.
BS05819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:19 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 51..1023 | 17..989 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:11 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 51..1023 | 17..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:15 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 86..1061 | 10..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:39 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 86..1061 | 10..989 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:39 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5900915..5901099 | 10..197 | 98 | <- | Plus |
3L | 5901153..5901360 | 198..405 | 100 | <- | Plus |
3L | 5901417..5901560 | 406..549 | 100 | <- | Plus |
3L | 5901796..5902101 | 550..855 | 99 | <- | Plus |
3L | 5902160..5902255 | 856..951 | 98 | <- | Plus |
3L | 5902335..5902371 | 952..989 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:15 Download gff for
BS05819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894015..5894199 | 10..197 | 98 | <- | Plus |
arm_3L | 5894253..5894460 | 198..405 | 100 | <- | Plus |
arm_3L | 5894517..5894660 | 406..549 | 100 | <- | Plus |
arm_3L | 5894896..5895201 | 550..855 | 99 | <- | Plus |
arm_3L | 5895260..5895355 | 856..951 | 98 | <- | Plus |
arm_3L | 5895435..5895471 | 952..989 | 97 | | Plus |
BS05819.5prime Sequence
938 bp (826 high quality bases) assembled on 2005-12-03
> BS05819.5prime
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTTCCAGACGT
CTGGCACACGCCTCGGGACAATGCCGCCAATCTGCACT
BS05819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32412-PA | 1023 | CG32412-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 36..957 | 17..938 | 4595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 505..197 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 5901153..5901360 | 857..650 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 5901416..5901561 | 650..505 | 730 | 100 | Minus |
3L | 28110227 | 3L | 5902157..5902255 | 202..104 | 495 | 100 | Minus |
3L | 28110227 | 3L | 5902335..5902421 | 103..17 | 435 | 100 | Minus |
3L | 28110227 | 3L | 5901019..5901099 | 938..858 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:21:53 has no hits.
BS05819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:20 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:13 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:15 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 30..957 | 11..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:00 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 30..957 | 11..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:00 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5901019..5901099 | 858..938 | 98 | <- | Minus |
3L | 5901153..5901360 | 650..857 | 100 | <- | Minus |
3L | 5901417..5901560 | 506..649 | 100 | <- | Minus |
3L | 5901796..5902101 | 200..505 | 100 | <- | Minus |
3L | 5902160..5902255 | 104..199 | 100 | <- | Minus |
3L | 5902335..5902427 | 11..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:15 Download gff for
BS05819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894253..5894460 | 650..857 | 100 | <- | Minus |
arm_3L | 5894517..5894660 | 506..649 | 100 | <- | Minus |
arm_3L | 5894119..5894199 | 858..938 | 98 | <- | Minus |
arm_3L | 5894896..5895201 | 200..505 | 100 | <- | Minus |
arm_3L | 5895260..5895355 | 104..199 | 100 | <- | Minus |
arm_3L | 5895435..5895527 | 11..103 | 96 | | Minus |
BS05819.complete Sequence
1054 bp assembled on 2008-08-15
GenBank Submission: FJ635242
> BS05819.complete
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTCCCAGACGT
CTGGCACACGCCTCGGGACAATGCCGCCAATCTGCACTGGCCTTCCATAC
GCAATTTCAACCGTGTTTTCCGTAATTTCGTTTATCAATACCTTAAGCGG
CACACGTCACCAGTGAATTTGCGTTTTTACCGAACATGAAGCTTTCTAGA
CCAT
BS05819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1023 | CG32412-PA | 1..1021 | 17..1037 | 5105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 36..1056 | 17..1037 | 5105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 505..197 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 5901153..5901360 | 857..650 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 5900920..5901099 | 1037..858 | 900 | 100 | Minus |
3L | 28110227 | 3L | 5901416..5901561 | 650..505 | 730 | 100 | Minus |
3L | 28110227 | 3L | 5902157..5902255 | 202..104 | 495 | 100 | Minus |
3L | 28110227 | 3L | 5902335..5902421 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:01 has no hits.
BS05819.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:58 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 22..1053 | 11..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:03 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 36..1056 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:35 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 28..1048 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:42 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 36..1056 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:42 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5900918..5901099 | 858..1038 | 99 | <- | Minus |
3L | 5901153..5901360 | 650..857 | 100 | <- | Minus |
3L | 5901417..5901560 | 506..649 | 100 | <- | Minus |
3L | 5901796..5902101 | 200..505 | 100 | <- | Minus |
3L | 5902160..5902255 | 104..199 | 100 | <- | Minus |
3L | 5902335..5902421 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:03 Download gff for
BS05819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894517..5894660 | 506..649 | 100 | <- | Minus |
arm_3L | 5894018..5894199 | 858..1038 | 99 | <- | Minus |
arm_3L | 5894896..5895201 | 200..505 | 100 | <- | Minus |
arm_3L | 5895260..5895355 | 104..199 | 100 | <- | Minus |
arm_3L | 5894253..5894460 | 650..857 | 100 | <- | Minus |
arm_3L | 5895435..5895521 | 17..103 | 100 | | Minus |
BS05819.pep Sequence
Translation from 16 to 1038
> BS05819.pep
MAIGSVVFAAAGLLLLLLPPSHQQATAGNIGSQWRDDEVHFNRTLDSILV
PRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGT
INPQAQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYL
QKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQ
AQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRT
AGQLEGNNNMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFPDVWHTPR
DNAANLHWPSIRNFNRVFRNFVYQYLKRHTSPVNLRFYRT*
BS05819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-PA | 340 | CG32412-PA | 1..340 | 1..340 | 1775 | 100 | Plus |
isoQC-PA | 352 | CG5976-PA | 58..345 | 37..326 | 646 | 43.5 | Plus |
isoQC-PB | 354 | CG5976-PB | 60..347 | 37..326 | 646 | 43.5 | Plus |
CG6168-PC | 342 | CG6168-PC | 59..339 | 37..334 | 549 | 41.8 | Plus |
CG6168-PB | 342 | CG6168-PB | 59..339 | 37..334 | 549 | 41.8 | Plus |