Clone BS05819 Report

Search the DGRC for BS05819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptQC-RA
Protein status:BS05819.pep: full length peptide match
Sequenced Size:1054

Clone Sequence Records

BS05819.3prime Sequence

990 bp (769 high quality bases) assembled on 2005-12-03

> BS05819.3prime
ATGGTCTAGAAAGCTTCATGTTCGGTAAAAACGCAAATTCACTGGTGACG
TGTGCCGCTTAAGGTATTGATAAACGAAATTACGGAAAACACGGTTGAAA
TTGCGTATGGAAGGCCAGTGCAGATTGGCGGCATTGTCCCGAGGCGTGTG
CCAGACGTCTGGGAAAGGAGTGGCTACCAAATGCAGCACAGGAACATTCT
CATCTAAAAACGGTCGATGATCATCGTCGACTAGACCACCGCTGACACGA
CTTAAAAACATATTGTTATTGCCCTCCAGCTGGCCGGCAGTGCGCAGAGA
TTTCTCAATCTGCACGAGACTGGAGTGCAGTCCGTCGGTGTTTTCATAAA
AACTGGAGAACTTGGGATTCCGCGCCCCAATTAGATCCAGCAGCACCAGA
ACTTCAATTCGATCTATATTGCGTGGAGCTAGTTGCGCCTGGGAACCACT
GCGTTTGCTAGCCAACTTCGCGGCCAGATGCTTTGATCCGTATACAGAGT
CCGCATCGGTCCACTCCTTAAAGGCCTCCTCGCCATCGAAGAATATGAGC
ATAAGTCCCACATCGCTGCGATTGCGAAACTCTTTCTGCAGATACGCGCC
CAAGGTCTTGGCGGTGTTCAACAGAATGGCACAGGGCACGGCGGAGTCAG
TGGCGCCCACAAAGCCGGGATCATTGGGGAAGTACTTGCTGTCGTAGTGG
CAGGCCAGAGCGAGAAAGTTCTGAGCCTGGGGATTGATTGTGCCCACTAC
GTTGGCAAACGTGAGTTCGCCGAAAACTGGAACTCTCTGCTTGAACTCAT
CCACTTCCGTTTGGAAAGCCAGGCCGTTCAGCGATTGGACCAGGTACTCG
CGCACCTGCTGATGTCCCCGACTGCCAACGACGCGTGGCACCAAAATGGA
GTCCAGGGTGCGGTTGAAATGAACCTCATCGTCGCGCCACTGGGATCCAA
TGTTTCCCGCTGTCGCTTGCTGATGCGACGGCGGGGAGGA

BS05819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32412-PA 1023 CG32412-RA 223..1021 816..18 3995 100 Minus
CG32412-PA 1023 CG32412-RA 54..218 985..821 800 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
QC-RA 1141 CG32412-RA 89..1056 985..18 4780 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5901796..5902104 550..858 1500 99 Plus
3L 28110227 3L 5901153..5901360 198..405 1040 100 Plus
3L 28110227 3L 5900920..5901099 18..197 900 100 Plus
3L 28110227 3L 5901416..5901561 405..550 730 100 Plus
3L 28110227 3L 5902157..5902255 853..951 480 99 Plus
Blast to na_te.dros performed on 2015-02-06 12:58:10 has no hits.

BS05819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:19 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32412-PA 51..1023 17..989 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:11 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32412-PA 51..1023 17..989 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:15 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
QC-RA 86..1061 10..989 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:39 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
QC-RA 86..1061 10..989 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:39 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5900915..5901099 10..197 98 <- Plus
3L 5901153..5901360 198..405 100 <- Plus
3L 5901417..5901560 406..549 100 <- Plus
3L 5901796..5902101 550..855 99 <- Plus
3L 5902160..5902255 856..951 98 <- Plus
3L 5902335..5902371 952..989 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:15 Download gff for BS05819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5894015..5894199 10..197 98 <- Plus
arm_3L 5894253..5894460 198..405 100 <- Plus
arm_3L 5894517..5894660 406..549 100 <- Plus
arm_3L 5894896..5895201 550..855 99 <- Plus
arm_3L 5895260..5895355 856..951 98 <- Plus
arm_3L 5895435..5895471 952..989 97   Plus

BS05819.5prime Sequence

938 bp (826 high quality bases) assembled on 2005-12-03

> BS05819.5prime
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTTCCAGACGT
CTGGCACACGCCTCGGGACAATGCCGCCAATCTGCACT

BS05819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32412-PA 1023 CG32412-RA 1..922 17..938 4585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
QC-RA 1141 CG32412-RA 36..957 17..938 4595 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5901796..5902104 505..197 1545 100 Minus
3L 28110227 3L 5901153..5901360 857..650 1040 100 Minus
3L 28110227 3L 5901416..5901561 650..505 730 100 Minus
3L 28110227 3L 5902157..5902255 202..104 495 100 Minus
3L 28110227 3L 5902335..5902421 103..17 435 100 Minus
3L 28110227 3L 5901019..5901099 938..858 390 98.8 Minus
Blast to na_te.dros performed on 2015-02-12 07:21:53 has no hits.

BS05819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:20 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32412-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:13 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32412-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:15 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
QC-RA 30..957 11..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:00 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
QC-RA 30..957 11..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:00 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5901019..5901099 858..938 98 <- Minus
3L 5901153..5901360 650..857 100 <- Minus
3L 5901417..5901560 506..649 100 <- Minus
3L 5901796..5902101 200..505 100 <- Minus
3L 5902160..5902255 104..199 100 <- Minus
3L 5902335..5902427 11..103 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:15 Download gff for BS05819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5894253..5894460 650..857 100 <- Minus
arm_3L 5894517..5894660 506..649 100 <- Minus
arm_3L 5894119..5894199 858..938 98 <- Minus
arm_3L 5894896..5895201 200..505 100 <- Minus
arm_3L 5895260..5895355 104..199 100 <- Minus
arm_3L 5895435..5895527 11..103 96   Minus

BS05819.complete Sequence

1054 bp assembled on 2008-08-15

GenBank Submission: FJ635242

> BS05819.complete
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTCCCAGACGT
CTGGCACACGCCTCGGGACAATGCCGCCAATCTGCACTGGCCTTCCATAC
GCAATTTCAACCGTGTTTTCCGTAATTTCGTTTATCAATACCTTAAGCGG
CACACGTCACCAGTGAATTTGCGTTTTTACCGAACATGAAGCTTTCTAGA
CCAT

BS05819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
QC-RA 1023 CG32412-PA 1..1021 17..1037 5105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
QC-RA 1141 CG32412-RA 36..1056 17..1037 5105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5901796..5902104 505..197 1545 100 Minus
3L 28110227 3L 5901153..5901360 857..650 1040 100 Minus
3L 28110227 3L 5900920..5901099 1037..858 900 100 Minus
3L 28110227 3L 5901416..5901561 650..505 730 100 Minus
3L 28110227 3L 5902157..5902255 202..104 495 100 Minus
3L 28110227 3L 5902335..5902421 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:19:01 has no hits.

BS05819.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:58 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
CG32412-RA 22..1053 11..1045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:03 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
QC-RA 36..1056 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:35 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
CG32412-RA 28..1048 17..1038 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:42 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
QC-RA 36..1056 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:42 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5900918..5901099 858..1038 99 <- Minus
3L 5901153..5901360 650..857 100 <- Minus
3L 5901417..5901560 506..649 100 <- Minus
3L 5901796..5902101 200..505 100 <- Minus
3L 5902160..5902255 104..199 100 <- Minus
3L 5902335..5902421 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:03 Download gff for BS05819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5894517..5894660 506..649 100 <- Minus
arm_3L 5894018..5894199 858..1038 99 <- Minus
arm_3L 5894896..5895201 200..505 100 <- Minus
arm_3L 5895260..5895355 104..199 100 <- Minus
arm_3L 5894253..5894460 650..857 100 <- Minus
arm_3L 5895435..5895521 17..103 100   Minus

BS05819.pep Sequence

Translation from 16 to 1038

> BS05819.pep
MAIGSVVFAAAGLLLLLLPPSHQQATAGNIGSQWRDDEVHFNRTLDSILV
PRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGT
INPQAQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYL
QKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQ
AQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRT
AGQLEGNNNMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFPDVWHTPR
DNAANLHWPSIRNFNRVFRNFVYQYLKRHTSPVNLRFYRT*

BS05819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
QC-PA 340 CG32412-PA 1..340 1..340 1775 100 Plus
isoQC-PA 352 CG5976-PA 58..345 37..326 646 43.5 Plus
isoQC-PB 354 CG5976-PB 60..347 37..326 646 43.5 Plus
CG6168-PC 342 CG6168-PC 59..339 37..334 549 41.8 Plus
CG6168-PB 342 CG6168-PB 59..339 37..334 549 41.8 Plus