Clone Sequence Records
BS05820.5prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS05820.5prime
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTTGAAAGCTTTCTAGACC
BS05820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3129-PA | 594 | Rab-RP4-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..745 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 508..74 | 2175 | 100 | Minus |
X | 23542271 | X | 5670915..5671018 | 610..507 | 520 | 100 | Minus |
X | 23542271 | X | 5671603..5671661 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:19 has no hits.
BS05820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:22 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:15 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:12 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..749 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:27 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..749 | 9..618 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:27 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5670911..5671016 | 509..618 | 96 | <- | Minus |
X | 5671081..5671513 | 76..508 | 100 | <- | Minus |
X | 5671603..5671665 | 9..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:12 Download gff for
BS05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564944..5565049 | 509..618 | 96 | <- | Minus |
arm_X | 5565114..5565546 | 76..508 | 100 | <- | Minus |
arm_X | 5565636..5565698 | 9..75 | 94 | | Minus |
BS05820.3prime Sequence
624 bp (623 high quality bases) assembled on 2005-12-03
> BS05820.3prime
ATGGTCTAGAAAGCTTTCAACAGTAACACGTAGACGCGCTTGCCTCCAGA
TCCCGATCGCTGGCGATGTCCAGACCGGCGGAGGCATTGCCATTGTTGAA
GTATTCGGAGGAGACGATCTTCTCCACCACATCTTTGAACACATCGCTGA
CGAACTGATCGCATTTGGCTGAGGTCTCGATGAAGAGCGCCCTGTGCTTC
CTGGCAAACTTTCGACCCTCCTCGCGATCCACAACTCGCTCCTCGTCGAT
CTTGTTGCCTACCACAATGATGGCAATGTTGGGATTGTCGCTGTAGCTAT
CCAGTTCAGCCAGCCAGGTTTCCAGCTTGACCAGGCTGTCCCTGCTGGTG
ATGTCGTACACTAGAATGGCGCCCAGAGCCTTCCGATAGAAACTGGGCGT
CAGGCTGCGGAATCTCTCGGCGCCCGCCGTATCCCACAGGGCCACCTTGT
AGTCTATGCCGTCCACCTGCATCACTTTGCTCTTGAAGTCCATGCCAATC
GTGACGTCATGGTTCTGGTCGAACTTGTTCTCCACGAAGCGACGTATCAA
ACTGGACTTGCCCACGCCGCTTTCCCCGATCACCAGCAGCTTGATAGCCC
GATCAGCCATGTCGACTGATAACT
BS05820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3129-PA | 594 | Rab-RP4-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..745 | 610..17 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 119..553 | 2175 | 100 | Plus |
X | 23542271 | X | 5670915..5671018 | 17..120 | 520 | 100 | Plus |
X | 23542271 | X | 5671603..5671661 | 552..610 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:35:45 has no hits.
BS05820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:21 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:14 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:02 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..749 | 9..618 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:13 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..749 | 9..618 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:13 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5670911..5671016 | 9..118 | 96 | <- | Plus |
X | 5671081..5671513 | 119..551 | 100 | <- | Plus |
X | 5671603..5671665 | 552..618 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:02 Download gff for
BS05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564944..5565049 | 9..118 | 96 | <- | Plus |
arm_X | 5565114..5565546 | 119..551 | 100 | <- | Plus |
arm_X | 5565636..5565698 | 552..618 | 94 | | Plus |
BS05820.complete Sequence
626 bp (626 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635243
> BS05820.complete
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTTGAAAGCTTTCTAGACCAT
BS05820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 594 | CG3129-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..745 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 508..74 | 2175 | 100 | Minus |
X | 23542271 | X | 5670915..5671018 | 610..507 | 520 | 100 | Minus |
X | 23542271 | X | 5671603..5671661 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:59:23 has no hits.
BS05820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:56 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:26 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 143..746 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:56 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 152..744 | 17..609 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:56 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 143..746 | 9..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:02 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 152..744 | 17..609 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:02 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5670916..5671016 | 509..609 | 100 | <- | Minus |
X | 5671081..5671513 | 76..508 | 100 | <- | Minus |
X | 5671603..5671661 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:56 Download gff for
BS05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564949..5565049 | 509..609 | 100 | <- | Minus |
arm_X | 5565114..5565546 | 76..508 | 100 | <- | Minus |
arm_X | 5565636..5565694 | 17..75 | 100 | | Minus |
BS05820.pep Sequence
Translation from 16 to 609
> BS05820.pep
MADRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVD
GIDYKVALWDTAGAERFRSLTPSFYRKALGAILVYDITSRDSLVKLETWL
AELDSYSDNPNIAIIVVGNKIDEERVVDREEGRKFARKHRALFIETSAKC
DQFVSDVFKDVVEKIVSSEYFNNGNASAGLDIASDRDLEASASTCYC*
BS05820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-PA | 197 | CG3129-PA | 1..197 | 1..197 | 998 | 100 | Plus |
Rab2-PB | 213 | CG3269-PB | 8..183 | 7..177 | 379 | 43.5 | Plus |
Rab2-PA | 213 | CG3269-PA | 8..183 | 7..177 | 379 | 43.5 | Plus |
Rab4-PA | 213 | CG4921-PA | 6..177 | 3..169 | 354 | 44.5 | Plus |
Rab4-PB | 213 | CG4921-PB | 6..177 | 3..169 | 354 | 44.5 | Plus |