Clone BS05820 Report

Search the DGRC for BS05820

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptRab18-RA
Protein status:BS05820.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05820.5prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS05820.5prime
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTTGAAAGCTTTCTAGACC

BS05820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3129-PA 594 Rab-RP4-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rab18-RA 833 CG3129-RA 152..745 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5671081..5671515 508..74 2175 100 Minus
X 23542271 X 5670915..5671018 610..507 520 100 Minus
X 23542271 X 5671603..5671661 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:40:19 has no hits.

BS05820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:22 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3129-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:15 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3129-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:12 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 146..749 9..618 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:27 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 146..749 9..618 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:27 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5670911..5671016 509..618 96 <- Minus
X 5671081..5671513 76..508 100 <- Minus
X 5671603..5671665 9..75 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:12 Download gff for BS05820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5564944..5565049 509..618 96 <- Minus
arm_X 5565114..5565546 76..508 100 <- Minus
arm_X 5565636..5565698 9..75 94   Minus

BS05820.3prime Sequence

624 bp (623 high quality bases) assembled on 2005-12-03

> BS05820.3prime
ATGGTCTAGAAAGCTTTCAACAGTAACACGTAGACGCGCTTGCCTCCAGA
TCCCGATCGCTGGCGATGTCCAGACCGGCGGAGGCATTGCCATTGTTGAA
GTATTCGGAGGAGACGATCTTCTCCACCACATCTTTGAACACATCGCTGA
CGAACTGATCGCATTTGGCTGAGGTCTCGATGAAGAGCGCCCTGTGCTTC
CTGGCAAACTTTCGACCCTCCTCGCGATCCACAACTCGCTCCTCGTCGAT
CTTGTTGCCTACCACAATGATGGCAATGTTGGGATTGTCGCTGTAGCTAT
CCAGTTCAGCCAGCCAGGTTTCCAGCTTGACCAGGCTGTCCCTGCTGGTG
ATGTCGTACACTAGAATGGCGCCCAGAGCCTTCCGATAGAAACTGGGCGT
CAGGCTGCGGAATCTCTCGGCGCCCGCCGTATCCCACAGGGCCACCTTGT
AGTCTATGCCGTCCACCTGCATCACTTTGCTCTTGAAGTCCATGCCAATC
GTGACGTCATGGTTCTGGTCGAACTTGTTCTCCACGAAGCGACGTATCAA
ACTGGACTTGCCCACGCCGCTTTCCCCGATCACCAGCAGCTTGATAGCCC
GATCAGCCATGTCGACTGATAACT

BS05820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3129-PA 594 Rab-RP4-RA 1..594 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rab18-RA 833 CG3129-RA 152..745 610..17 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5671081..5671515 119..553 2175 100 Plus
X 23542271 X 5670915..5671018 17..120 520 100 Plus
X 23542271 X 5671603..5671661 552..610 295 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:35:45 has no hits.

BS05820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:21 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3129-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:14 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3129-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:02 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 146..749 9..618 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:13 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 146..749 9..618 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:13 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5670911..5671016 9..118 96 <- Plus
X 5671081..5671513 119..551 100 <- Plus
X 5671603..5671665 552..618 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:02 Download gff for BS05820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5564944..5565049 9..118 96 <- Plus
arm_X 5565114..5565546 119..551 100 <- Plus
arm_X 5565636..5565698 552..618 94   Plus

BS05820.complete Sequence

626 bp (626 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635243

> BS05820.complete
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTTGAAAGCTTTCTAGACCAT

BS05820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rab18-RA 594 CG3129-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rab18-RA 833 CG3129-RA 152..745 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5671081..5671515 508..74 2175 100 Minus
X 23542271 X 5670915..5671018 610..507 520 100 Minus
X 23542271 X 5671603..5671661 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:59:23 has no hits.

BS05820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:56 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP4-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:26 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP4-RA 143..746 9..618 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:56 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 152..744 17..609 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:56 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP4-RA 143..746 9..618 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:02 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
Rab18-RA 152..744 17..609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:02 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
X 5670916..5671016 509..609 100 <- Minus
X 5671081..5671513 76..508 100 <- Minus
X 5671603..5671661 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:56 Download gff for BS05820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5564949..5565049 509..609 100 <- Minus
arm_X 5565114..5565546 76..508 100 <- Minus
arm_X 5565636..5565694 17..75 100   Minus

BS05820.pep Sequence

Translation from 16 to 609

> BS05820.pep
MADRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVD
GIDYKVALWDTAGAERFRSLTPSFYRKALGAILVYDITSRDSLVKLETWL
AELDSYSDNPNIAIIVVGNKIDEERVVDREEGRKFARKHRALFIETSAKC
DQFVSDVFKDVVEKIVSSEYFNNGNASAGLDIASDRDLEASASTCYC*

BS05820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rab18-PA 197 CG3129-PA 1..197 1..197 998 100 Plus
Rab2-PB 213 CG3269-PB 8..183 7..177 379 43.5 Plus
Rab2-PA 213 CG3269-PA 8..183 7..177 379 43.5 Plus
Rab4-PA 213 CG4921-PA 6..177 3..169 354 44.5 Plus
Rab4-PB 213 CG4921-PB 6..177 3..169 354 44.5 Plus