Clone Sequence Records
BS05821.3prime Sequence
978 bp (891 high quality bases) assembled on 2005-12-03
> BS05821.3prime
ATGGTCTAGAAAGCTTTCATCTGGTTTCGTTGATGTACGTGGTCTCTTCG
ATACACGAGGCCTGCTCTTCGTTGAGGAGATCGGTGATGGAGTAGGCGGA
CAGGGGGCGTGAGAACCTCCGCTCGGAGAGAATATCATCGATGCTGGTCA
CCGGCGAGAGGCACTGGCAGTCCGGGCAGTCTTCCGGCTCCTCGGCACTC
CGGGCGATCACCTGGAATATATCCTCCATGCTGGTCTGCAGGCACAGGGA
AGGCGGCTTCCTCAGGAGAACCGGAGATCGGGAGTGCTCCAGTTCCGGGG
AACTGGAGAGCGGGGAGGCCGTGGAGGGCGTGGCAGAGGTACCACGGGTT
CGTCTTGGAACCGGCACTGCCATGGGCTCCCAATCGTTGTGGCTGGATGC
CTTCTTGGAGGGCTCCTCCTCCAGTTCCTGCCACAGGTGCATCGTCTGCT
CGATGTGCTGCAGCTGAGCCGAGAGCTGACTGGCGATGCTGGTTTTCCGC
GAGACGCAGGGCGTCGAGTCTCTGGACTCATCGCTTGCTCCGAACATCCT
GATCTCGGGAAGCGTTATGGGCGCAACGCGGCTCACCTGGCGCGTGTTGC
CCGTCTCAAACATCCTGGCTATCTTGGTGACGTTGCTCCGCTTAACGGGC
GCTGGACTAGGAGGTGGTAGCTCCGCTTTGGGCGCCACCTGCTGACGCTT
GGGATACACCCGGGTCACTGGCTTCCTGGCCTTGGGCTTCACCTTTCCGG
CGACCTGCTCCTGGCCCAGAACGTGGCAGCATAGCTCTGGGCCGTAGCAG
CGGTGAAACATGTTCCTGTTGGCCTCGTAGTCCGCGTCCGCGAAGCGTTT
CATCCGGATGAGGGACTTCGGCAGCAGGGTGACTACCACGTAGGAGACGA
GGAGGTAAGGTAGCCATTCCGCATACTTCCAGGCGGTTTTCACGTATTCC
GTGTAGTCCGTCATGTCGACTGATAACT
BS05821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PB | 948 | CG1146-RB | 1..948 | 964..17 | 4715 | 99.8 | Minus |
| CG1146-PC | 948 | CG1146-RC | 1..948 | 964..17 | 4715 | 99.8 | Minus |
| CG1146-PA | 948 | CG1146-RA | 1..948 | 964..17 | 4715 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1339 | 965..17 | 4730 | 99.9 | Minus |
| CG1146-RA | 1903 | CG1146-RA | 412..1360 | 965..17 | 4730 | 99.9 | Minus |
| CG1146-RC | 1721 | CG1146-RC | 230..1178 | 965..17 | 4730 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492070 | 965..17 | 4730 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:57:35 has no hits.
BS05821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:23 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PC | 1..948 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:16 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PA | 1..948 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:08 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 343..1297 | 17..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:35 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 224..1178 | 17..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:35 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491116..2492070 | 17..971 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:08 Download gff for
BS05821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491116..2492070 | 17..971 | 99 | | Minus |
BS05821.5prime Sequence
910 bp (879 high quality bases) assembled on 2005-12-03
> BS05821.5prime
GAAGTTATCAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCT
GGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTC
ACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGA
CTACGAGGCCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTAT
GCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAG
GCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCC
CAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACG
TCACCAAGATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGC
CGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGA
TGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCA
GTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGG
CAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTG
GGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCA
CGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCC
CGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAG
CATGGAGGATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCGGAAG
ACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCAGCATCGATGATATT
CTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCCGCTACTCCATCACCGA
TCTCCCTCAC
BS05821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PB | 948 | CG1146-RB | 1..889 | 17..905 | 4395 | 99.7 | Plus |
| CG1146-PC | 948 | CG1146-RC | 1..889 | 17..905 | 4395 | 99.7 | Plus |
| CG1146-PA | 948 | CG1146-RA | 1..889 | 17..905 | 4395 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1280 | 16..905 | 4420 | 99.8 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1301 | 16..905 | 4420 | 99.8 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1119 | 16..905 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492011 | 16..905 | 4420 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:55:16 has no hits.
BS05821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:24 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PC | 1..892 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:18 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PA | 1..892 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:14 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 343..1241 | 10..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:13 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 224..1122 | 10..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:13 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491116..2492014 | 10..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:14 Download gff for
BS05821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491116..2492014 | 10..910 | 99 | | Plus |
BS05821.complete Sequence
980 bp (980 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635244
> BS05821.complete
GAAGTTATCAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCT
GGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTC
ACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGA
CTACGAGGCCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTAT
GCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAG
GCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCC
CAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACG
TCACCAAGATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGC
CGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGA
TGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCA
GTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGG
CAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTG
GGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCA
CGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCC
CGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAG
CATGGAGGATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCGGAAG
ACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCAGCATCGATGATATT
CTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCGCCTACTCCATCACCGA
TCTCCTCAACGAAGAGCAGGCCTCGTGTATCGAAGAGACCACGTACATCA
ACGAAACCAGATGAAAGCTTTCTAGACCAT
BS05821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 948 | CG1146-PD | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG1146-RA | 948 | CG1146-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG1146-RC | 948 | CG1146-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1339 | 16..964 | 4745 | 100 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1360 | 16..964 | 4745 | 100 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1178 | 16..964 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492070 | 16..964 | 4745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:50:33 has no hits.
BS05821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:57 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:28 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 399..1353 | 10..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:11 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 350..1296 | 17..963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:58 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 399..1353 | 10..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:49 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 231..1177 | 17..963 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:49 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491123..2492069 | 17..963 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:11 Download gff for
BS05821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491123..2492069 | 17..963 | 100 | | Plus |
BS05821.pep Sequence
Translation from 16 to 963
> BS05821.pep
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETR*
BS05821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PD | 315 | CG1146-PD | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PA | 315 | CG1146-PA | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PC | 315 | CG1146-PC | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PB | 315 | CG1146-PB | 1..315 | 1..315 | 1647 | 100 | Plus |
