Clone Sequence Records
BS05823.3prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-03
> BS05823.3prime
ATGGTCTAGAAAGCTTCTACAGCTTGGTCTGCGCCGCCTTCGCGGGACCC
ACTTCCTTGGCCATCACCTGTATGCCCACGTGCGGGGCCGCCGGCTTGAA
GACCACCTCTCCCTGAGGCTTGTAGTCGGCGAACTGCATGCGGAACACCT
CGTGGAAGCCCAGCTTCTCCATCACCCGGGCGGAGTAGTGGCTGGAGCAG
AGCACGTGGTACACATTGATGCCGTTCTCCCGCATGTACTCGTACGCCCT
CTCCGTCAGGCGGCCTGCGATGCCCAGGCCCCGGTAGTTGGTGTCCACCG
ACAGGATCTTGCCGTCCAGGATGAGCTCCTCGTCGGGATACACGTCGAAG
ATGTTGAACTGCTCCTCCACGTGGTCCATCAGCGAGAGGATCTTCTTGAA
TTTGGGATGTTCACAGGAGTCGGCCGCCTTTTCGGGCACATCATCGGGGG
ACGGACGCCTCATAAGTCCATTTAGGAACACACCGATAATCTCGCCCTTC
TTGTTGACCGCCTTGTAGGAGCAGTTGTCGGGTAGCGGTTTCAGGGAGTA
CTTCTCCAGCTCCTTGCACTCGCCAAGGTCGAGGAAGGTGTTCAGCGGTT
CATCCTTGAAGAAAAAGGTCTTGAGCATGGCTATCACCGCCTCCCCATCC
TCCGGCTGGATCAGTTCGATGGTGTAGGGGCAGTCCTGGTCGACGGGGCA
TGCGGCTGGCTTCCCAGAGACGGTCAATGCGTCCTCCATGTCGACTGATA
ACT
BS05823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3318-PA | 723 | Dat-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
CG3318-PB | 828 | Dat-RB | 106..828 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1375 | 739..16 | 3620 | 100 | Minus |
Dat-RA | 1275 | CG3318-RA | 339..1062 | 739..16 | 3620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157549 | 452..16 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 24156895..24157049 | 606..452 | 775 | 100 | Minus |
2R | 25286936 | 2R | 24155843..24155978 | 739..604 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:20:35 has no hits.
BS05823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:28 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:23 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3318-PB | 100..828 | 17..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:53 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1062 | 16..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:49 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1062 | 16..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:49 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24155837..24155977 | 605..747 | 97 | -> | Minus |
2R | 24156897..24157049 | 452..604 | 100 | -> | Minus |
2R | 24157114..24157549 | 16..451 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:53 Download gff for
BS05823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043360..20043500 | 605..747 | 97 | -> | Minus |
arm_2R | 20044420..20044572 | 452..604 | 100 | -> | Minus |
arm_2R | 20044637..20045072 | 16..451 | 100 | | Minus |
BS05823.5prime Sequence
753 bp (752 high quality bases) assembled on 2005-12-03
> BS05823.5prime
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGTAGAAGCTTTCTAG
ACC
BS05823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3318-PA | 723 | Dat-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
CG3318-PB | 828 | Dat-RB | 106..828 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1375 | 17..740 | 3620 | 100 | Plus |
Dat-RA | 1275 | CG3318-RA | 339..1062 | 17..740 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157549 | 304..740 | 2185 | 100 | Plus |
2R | 25286936 | 2R | 24156895..24157049 | 150..304 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24155843..24155978 | 17..152 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:33:06 has no hits.
BS05823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:29 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:24 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3318-PB | 100..828 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:05 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1062 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:00 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1062 | 9..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:00 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24155837..24155977 | 9..151 | 97 | -> | Plus |
2R | 24156897..24157049 | 152..304 | 100 | -> | Plus |
2R | 24157114..24157549 | 305..740 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:05 Download gff for
BS05823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043360..20043500 | 9..151 | 97 | -> | Plus |
arm_2R | 20044420..20044572 | 152..304 | 100 | -> | Plus |
arm_2R | 20044637..20045072 | 305..740 | 100 | | Plus |
BS05823.complete Sequence
755 bp (755 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635245
> BS05823.complete
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGTAGAAGCTTTCTAG
ACCAT
BS05823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 828 | CG3318-PB | 106..828 | 17..739 | 3615 | 100 | Plus |
Dat-RA | 723 | CG3318-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1375 | 17..740 | 3620 | 100 | Plus |
Dat-RA | 1275 | CG3318-RA | 339..1062 | 17..740 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157549 | 304..740 | 2185 | 100 | Plus |
2R | 25286936 | 2R | 24156895..24157049 | 150..304 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24155843..24155978 | 17..152 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:50 has no hits.
BS05823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:59 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 100..828 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:29 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 529..1258 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:19 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 339..1061 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:59 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 529..1258 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:08 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 339..1061 | 17..739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:08 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24155843..24155977 | 17..151 | 100 | -> | Plus |
2R | 24156897..24157049 | 152..304 | 100 | -> | Plus |
2R | 24157114..24157548 | 305..739 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:19 Download gff for
BS05823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043366..20043500 | 17..151 | 100 | -> | Plus |
arm_2R | 20044420..20044572 | 152..304 | 100 | -> | Plus |
arm_2R | 20044637..20045071 | 305..739 | 100 | | Plus |
BS05823.pep Sequence
Translation from 16 to 738
> BS05823.pep
MEDALTVSGKPAACPVDQDCPYTIELIQPEDGEAVIAMLKTFFFKDEPLN
TFLDLGECKELEKYSLKPLPDNCSYKAVNKKGEIIGVFLNGLMRRPSPDD
VPEKAADSCEHPKFKKILSLMDHVEEQFNIFDVYPDEELILDGKILSVDT
NYRGLGIAGRLTERAYEYMRENGINVYHVLCSSHYSARVMEKLGFHEVFR
MQFADYKPQGEVVFKPAAPHVGIQVMAKEVGPAKAAQTKL*
BS05823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-PA | 240 | CG3318-PA | 1..240 | 1..240 | 1266 | 100 | Plus |
Dat-PB | 275 | CG3318-PB | 36..275 | 1..240 | 1266 | 100 | Plus |
CG13759-PD | 228 | CG13759-PD | 4..216 | 25..230 | 234 | 29.5 | Plus |
CG13759-PC | 228 | CG13759-PC | 4..216 | 25..230 | 234 | 29.5 | Plus |
CG13759-PB | 228 | CG13759-PB | 4..216 | 25..230 | 234 | 29.5 | Plus |