Clone BS05823 Report

Search the DGRC for BS05823

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptDat-RA
Protein status:BS05823.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05823.3prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-03

> BS05823.3prime
ATGGTCTAGAAAGCTTCTACAGCTTGGTCTGCGCCGCCTTCGCGGGACCC
ACTTCCTTGGCCATCACCTGTATGCCCACGTGCGGGGCCGCCGGCTTGAA
GACCACCTCTCCCTGAGGCTTGTAGTCGGCGAACTGCATGCGGAACACCT
CGTGGAAGCCCAGCTTCTCCATCACCCGGGCGGAGTAGTGGCTGGAGCAG
AGCACGTGGTACACATTGATGCCGTTCTCCCGCATGTACTCGTACGCCCT
CTCCGTCAGGCGGCCTGCGATGCCCAGGCCCCGGTAGTTGGTGTCCACCG
ACAGGATCTTGCCGTCCAGGATGAGCTCCTCGTCGGGATACACGTCGAAG
ATGTTGAACTGCTCCTCCACGTGGTCCATCAGCGAGAGGATCTTCTTGAA
TTTGGGATGTTCACAGGAGTCGGCCGCCTTTTCGGGCACATCATCGGGGG
ACGGACGCCTCATAAGTCCATTTAGGAACACACCGATAATCTCGCCCTTC
TTGTTGACCGCCTTGTAGGAGCAGTTGTCGGGTAGCGGTTTCAGGGAGTA
CTTCTCCAGCTCCTTGCACTCGCCAAGGTCGAGGAAGGTGTTCAGCGGTT
CATCCTTGAAGAAAAAGGTCTTGAGCATGGCTATCACCGCCTCCCCATCC
TCCGGCTGGATCAGTTCGATGGTGTAGGGGCAGTCCTGGTCGACGGGGCA
TGCGGCTGGCTTCCCAGAGACGGTCAATGCGTCCTCCATGTCGACTGATA
ACT

BS05823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3318-PA 723 Dat-RA 1..723 739..17 3615 100 Minus
CG3318-PB 828 Dat-RB 106..828 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dat-RB 1588 CG3318-RB 652..1375 739..16 3620 100 Minus
Dat-RA 1275 CG3318-RA 339..1062 739..16 3620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24157113..24157549 452..16 2185 100 Minus
2R 25286936 2R 24156895..24157049 606..452 775 100 Minus
2R 25286936 2R 24155843..24155978 739..604 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:20:35 has no hits.

BS05823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:28 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
Dat-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:23 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3318-PB 100..828 17..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:53 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 333..1062 16..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:49 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 333..1062 16..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:49 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24155837..24155977 605..747 97 -> Minus
2R 24156897..24157049 452..604 100 -> Minus
2R 24157114..24157549 16..451 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:53 Download gff for BS05823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20043360..20043500 605..747 97 -> Minus
arm_2R 20044420..20044572 452..604 100 -> Minus
arm_2R 20044637..20045072 16..451 100   Minus

BS05823.5prime Sequence

753 bp (752 high quality bases) assembled on 2005-12-03

> BS05823.5prime
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGTAGAAGCTTTCTAG
ACC

BS05823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3318-PA 723 Dat-RA 1..723 17..739 3615 100 Plus
CG3318-PB 828 Dat-RB 106..828 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dat-RB 1588 CG3318-RB 652..1375 17..740 3620 100 Plus
Dat-RA 1275 CG3318-RA 339..1062 17..740 3620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24157113..24157549 304..740 2185 100 Plus
2R 25286936 2R 24156895..24157049 150..304 775 100 Plus
2R 25286936 2R 24155843..24155978 17..152 680 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:33:06 has no hits.

BS05823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:29 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
Dat-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:24 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3318-PB 100..828 9..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:05 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 333..1062 9..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:00 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 333..1062 9..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:00 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24155837..24155977 9..151 97 -> Plus
2R 24156897..24157049 152..304 100 -> Plus
2R 24157114..24157549 305..740 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:05 Download gff for BS05823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20043360..20043500 9..151 97 -> Plus
arm_2R 20044420..20044572 152..304 100 -> Plus
arm_2R 20044637..20045072 305..740 100   Plus

BS05823.complete Sequence

755 bp (755 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635245

> BS05823.complete
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGTAGAAGCTTTCTAG
ACCAT

BS05823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dat-RB 828 CG3318-PB 106..828 17..739 3615 100 Plus
Dat-RA 723 CG3318-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dat-RB 1588 CG3318-RB 652..1375 17..740 3620 100 Plus
Dat-RA 1275 CG3318-RA 339..1062 17..740 3620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24157113..24157549 304..740 2185 100 Plus
2R 25286936 2R 24156895..24157049 150..304 775 100 Plus
2R 25286936 2R 24155843..24155978 17..152 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:33:50 has no hits.

BS05823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:59 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
Dat-RB 100..828 9..739 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:29 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
Dat-RB 529..1258 9..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:19 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 339..1061 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:59 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
Dat-RB 529..1258 9..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:08 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
Dat-RA 339..1061 17..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:08 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24155843..24155977 17..151 100 -> Plus
2R 24156897..24157049 152..304 100 -> Plus
2R 24157114..24157548 305..739 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:19 Download gff for BS05823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20043366..20043500 17..151 100 -> Plus
arm_2R 20044420..20044572 152..304 100 -> Plus
arm_2R 20044637..20045071 305..739 100   Plus

BS05823.pep Sequence

Translation from 16 to 738

> BS05823.pep
MEDALTVSGKPAACPVDQDCPYTIELIQPEDGEAVIAMLKTFFFKDEPLN
TFLDLGECKELEKYSLKPLPDNCSYKAVNKKGEIIGVFLNGLMRRPSPDD
VPEKAADSCEHPKFKKILSLMDHVEEQFNIFDVYPDEELILDGKILSVDT
NYRGLGIAGRLTERAYEYMRENGINVYHVLCSSHYSARVMEKLGFHEVFR
MQFADYKPQGEVVFKPAAPHVGIQVMAKEVGPAKAAQTKL*

BS05823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dat-PA 240 CG3318-PA 1..240 1..240 1266 100 Plus
Dat-PB 275 CG3318-PB 36..275 1..240 1266 100 Plus
CG13759-PD 228 CG13759-PD 4..216 25..230 234 29.5 Plus
CG13759-PC 228 CG13759-PC 4..216 25..230 234 29.5 Plus
CG13759-PB 228 CG13759-PB 4..216 25..230 234 29.5 Plus