Clone Sequence Records
BS05824.3prime Sequence
846 bp (760 high quality bases) assembled on 2005-12-03
> BS05824.3prime
ATGGTCTAGAAAGCTTTTAGTGGAATAAAAGGTTGCCCTTCTTGGCGGCT
ATGGGCAAGCGGTCGCCCTGGAGGAACGGGTTTATGACCGCGTCGTCCAG
CCGAGGATCGGGCATCACAGGATATCCGGCCTTCTTAGCCAGGCTGTTAA
CGTTGTTCAGGCTGTTCTCCTGGCCCATCTGCATGATGTACTGCTCCACG
GCGGAGTTCAGGTCACCCTTGTCGCCGCCCACATCAGCACTATCCTGTTC
CGAGCAGTCGAACATATGCTCGTTGTCGCAGGTACAGTCCTGAGCGGCCT
GGAACTCCCGGCTGAAGATGGCCGTGTTTTCGAAGTCGACAATGCAGCTG
CCGCCTTGCGTCTCCATGTCGTAGCCCTCAGGGCAGGGATTAGGAGGGTT
GCAGTAGGCAGGCAGGCCGGCGTCGTTCTTCACTATAGTGGGATACCTGT
TGGGACCCTCTCCCATTCCGCCGGAGATGAACTGGTGACCCCACAGCGAA
CTGTGCTGCAGAAACTCGTCATCCCGCAGCGAAGGATGGGAGGCAGCTCC
CGATGCCGAGCCCGATTGCAGGATGCAGTCGCTTCCGCCGTCACACAGCC
TCGCGTACTCCGACCGGGAGACCAGGTCCACGTTGTCCTTGGAGCCAGCG
GCTGCCTCGTTGCCCACGTCGTAATAGCCCACCTGCATGTCTTTGTCCAT
GCGATTCAGCAGATCCGTCATCAAGACATCGGCAAGAATATCCTTGGCGC
TATAGGACTGCACCTGGTAGCCACTCAAGGCGACCACGAGCATCGCCACC
ATCATGTACACACTTTTGCGACGGGACAACATGTCGACTGATAACT
BS05824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1168-PA | 816 | 7B2-RA | 17..816 | 816..17 | 4000 | 100 | Minus |
CG1168-PB | 831 | 7B2-RB | 35..831 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
7B2-RA | 1133 | CG1168-RA | 153..968 | 832..17 | 4020 | 99.6 | Minus |
7B2-RB | 1148 | CG1168-RB | 187..983 | 813..17 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5377014..5377810 | 813..17 | 3985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:30:07 has no hits.
BS05824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:30 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1168-PA | 1..816 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:26 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1168-PA | 1..816 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:40 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 179..994 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:12 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 153..968 | 17..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:12 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5377009..5377810 | 17..821 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:40 Download gff for
BS05824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1202731..1203532 | 17..821 | 99 | | Minus |
BS05824.5prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-03
> BS05824.5prime
GAAGTTATCAGTCGACATGTTGTTCCGTTCGCAAAGTGTGTACATGATGG
TGGCGATGCTCGTGGTCGCCTTGAGTGGCTACCAGGTGCAGTCCTATAGC
GCCAAGGATATTCTTGCCGATGTCTTGATGACGGATCTGCTGAATCGCAT
GGACAAAGACATGCAGGTGGGCTATTACGACGTGGGCAACGAGGCAGCCG
CTGGCTCCAAGGACAACGTGGACCTGGTCTCCCGGTCGGAGTACGCGAGG
CTGTGTGACGGCGGAAGCGACTGCATCCTGCAATCGGGCTCGGCATCGGG
AGCTGCCTCCCATCCTTCGCTGCGGGATGACGAGTTTCTGCAGCACAGTT
CGCTGTGGGGTCACCAGTTCATCTCCGGCGGAATGGGAGAGGGTCCCAAC
AGGTATCCCACTATAGTGAAGAACGACGCCGGCCTGCCTGCCTACTGCAA
CCCTCCTAATCCCTGCCCTGAGGGCTACGACATGGAGACGCAAGGCGGCA
GCTGCATTGTCGACTTCGAAAACACGGCCATCTTCAGCCGGGAGTTCCAG
GCCGCTCAGGACTGTACCTGCGACAACGAGCATATGTTCGACTGCTCGGA
ACAGGATAGTGCTGATGTGGGCGGCGACAAGGGTGACCTGAACTCCGCCG
TGGAGCAGTACATCATGCAGATGGGCCAGGAGAACAGCCTGAACAACGTT
AACAGCCTGGCTA
BS05824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1168-PA | 816 | 7B2-RA | 1..697 | 17..713 | 3485 | 100 | Plus |
CG1168-PB | 831 | 7B2-RB | 35..712 | 36..713 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
7B2-RA | 1133 | CG1168-RA | 153..849 | 17..713 | 3485 | 100 | Plus |
7B2-RB | 1148 | CG1168-RB | 187..864 | 36..713 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5377014..5377691 | 36..713 | 3390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:48:35 has no hits.
BS05824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:31 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1168-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:28 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1168-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:52 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 171..874 | 7..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:07 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 145..848 | 7..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:07 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5377014..5377690 | 36..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:52 Download gff for
BS05824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1202736..1203412 | 36..712 | 100 | | Plus |
BS05824.complete Sequence
848 bp (848 high quality bases) assembled on 2005-10-27
> BS05824.complete
GAAGTTATCAGTCGACATGTTGTTCCGTTCGCAAAGTGTGTACATGATGG
TGGCGATGCTCGTGGTCGCCTTGAGTGGCTACCAGGTGCAGTCCTATAGC
GCCAAGGATATTCTTGCCGATGTCTTGATGACGGATCTGCTGAATCGCAT
GGACAAAGACATGCAGGTGGGCTATTACGACGTGGGCAACGAGGCAGCCG
CTGGCTCCAAGGACAACGTGGACCTGGTCTCCCGGTCGGAGTACGCGAGG
CTGTGTGACGGCGGAAGCGACTGCATCCTGCAATCGGGCTCGGCATCGGG
AGCTGCCTCCCATCCTTCGCTGCGGGATGACGAGTTTCTGCAGCACAGTT
CGCTGTGGGGTCACCAGTTCATCTCCGGCGGAATGGGAGAGGGTCCCAAC
AGGTATCCCACTATAGTGAAGAACGACGCCGGCCTGCCTGCCTACTGCAA
CCCTCCTAATCCCTGCCCTGAGGGCTACGACATGGAGACGCAAGGCGGCA
GCTGCATTGTCGACTTCGAAAACACGGCCATCTTCAGCCGGGAGTTCCAG
GCCGCTCAGGACTGTACCTGCGACAACGAGCATATGTTCGACTGCTCGGA
ACAGGATAGTGCTGATGTGGGCGGCGACAAGGGTGACCTGAACTCCGCCG
TGGAGCAGTACATCATGCAGATGGGCCAGGAGAACAGCCTGAACAACGTT
AACAGCCTGGCTAAGAAGGCCGGATATCCTGTGATGCCCGATCCTCGGCT
GGACGACGCGGTCATAAACCCGTTCCTCCAGGGCGACCGCTTGCCCATAG
CCGCCAAGAAGGGCAACCTTTTATTCCACTAAAAGCTTTCTAGACCAT
BS05824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
7B2-RA | 816 | CG1168-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
7B2-RB | 831 | CG1168-PB | 35..831 | 36..832 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
7B2-RA | 1133 | CG1168-RA | 153..968 | 17..832 | 4080 | 100 | Plus |
7B2-RB | 1148 | CG1168-RB | 187..983 | 36..832 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5377014..5377810 | 36..832 | 3985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:29 has no hits.
BS05824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:00 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:31 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 171..994 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:41 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 184..992 | 22..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:00 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 171..994 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:35 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
7B2-RA | 158..966 | 22..830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:35 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5377014..5377808 | 36..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:41 Download gff for
BS05824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1202736..1203530 | 36..830 | 100 | | Plus |
BS05824.pep Sequence
Translation from 16 to 831
> BS05824.pep
MLFRSQSVYMMVAMLVVALSGYQVQSYSAKDILADVLMTDLLNRMDKDMQ
VGYYDVGNEAAAGSKDNVDLVSRSEYARLCDGGSDCILQSGSASGAASHP
SLRDDEFLQHSSLWGHQFISGGMGEGPNRYPTIVKNDAGLPAYCNPPNPC
PEGYDMETQGGSCIVDFENTAIFSREFQAAQDCTCDNEHMFDCSEQDSAD
VGGDKGDLNSAVEQYIMQMGQENSLNNVNSLAKKAGYPVMPDPRLDDAVI
NPFLQGDRLPIAAKKGNLLFH*
BS05824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
7B2-PA | 271 | CG1168-PA | 1..271 | 1..271 | 1436 | 100 | Plus |
7B2-PB | 276 | CG1168-PB | 1..276 | 1..271 | 1417 | 97.8 | Plus |