Clone BS05825 Report

Search the DGRC for BS05825

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG33107-RA
Protein status:BS05825.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05825.3prime Sequence

813 bp (789 high quality bases) assembled on 2005-12-03

> BS05825.3prime
ATGGTCTAGAAAGCTTTTATTGGAACTCTGAATTTGTTTGCTCGGAAATC
TTGAAGCTGCAAAGTTGGGGTGTTGTTGAGGCGCCCCGAACCACGCAATA
AGCTATGAATCGTTCAATCATCATTTCAAAGTCGCCATAGGCGGCGGAGT
GATCCATGCGCACCTGCAGGAAGTACTTGTGTATCTCGGCACCCAGATTG
TCCTTCCAATCAGGACACTCCTCGCGTATACGTCTGCAATTGATGATCAT
GCTGAAAGTGCGGATGAGCATAAACAAATCTGCCTGGCGTCCACTGTTTG
CCAACTGGCGCCAGTTGACCGTTTTGGCCATTTCAAAAGCCTTGAGAGCA
TATTCCTTCTGGTCCAGTTCAACTGGTTCTCCCGTGTACCGTCCCATTAT
GGTGAGTAGCAGGGCCATAGCTACATCGTTGCCAAGATGGCAGGATTCTA
CCATGGCGGGAATCGCGGCCTGCAGGTCCAGCACTCTTTCCAGGCGCTCC
ATACCCACGCCAGTGATAAGGTTTTCGTACAACCCACTGGCCATGTAGAA
CATCTCCTCCGAGTCCAGGGACTCTGCCAGGTGACACACCACATCCACCA
TCATGTAGCGCTCCTTCATCAGCAGAACGTTGTCCCTTTGGTACGTCATC
ATCATAATGGAGAGGGTAAACAGATCGAGCAGCTGCTGCAAATTGAGTTC
CAGCTTCCCGGCTAAGGTAGCCATCATGCGATTCAGCAACTGTTTGCCGT
CTGTGGTTTCTGCAGCGTAAGGAAACAAATGCTTGATGGACGACTTCCGG
AGAAAGGACATGA

BS05825.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-PA 876 CG33107-RA 80..876 813..17 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-RA 1067 CG33107-RA 154..950 813..17 3985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22583699..22583929 119..349 1155 100 Plus
3R 32079331 3R 22583987..22584193 349..555 1035 100 Plus
3R 32079331 3R 22584250..22584437 554..741 940 100 Plus
3R 32079331 3R 22584492..22584565 740..813 370 100 Plus
3R 32079331 3R 22583469..22583523 17..71 275 100 Plus
3R 32079331 3R 22583595..22583642 72..119 240 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:10:50 has no hits.

BS05825.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:32 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-PA 81..876 17..812 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:29 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-PA 81..876 17..812 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:11 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 155..955 12..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:49 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 155..955 12..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:49 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22583464..22583523 12..71 96 <- Plus
3R 22583595..22583641 72..118 100 <- Plus
3R 22583699..22583929 119..349 100 <- Plus
3R 22583988..22584191 350..553 100 <- Plus
3R 22584250..22584435 554..739 100 <- Plus
3R 22584492..22584564 740..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:11 Download gff for BS05825.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18409186..18409245 12..71 96 <- Plus
arm_3R 18409317..18409363 72..118 100 <- Plus
arm_3R 18409421..18409651 119..349 100 <- Plus
arm_3R 18409710..18409913 350..553 100 <- Plus
arm_3R 18409972..18410157 554..739 100 <- Plus
arm_3R 18410214..18410286 740..812 100   Plus

BS05825.5prime Sequence

905 bp (830 high quality bases) assembled on 2005-12-03

> BS05825.5prime
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTTGC
AGCTTCAAGATTTCCGAGCAACAAATTCAGAGTTCCAATAAAAGCTTTCT
AGACC

BS05825.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-PA 876 CG33107-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-RA 1067 CG33107-RA 75..950 17..891 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22583699..22583929 790..560 1155 100 Minus
3R 32079331 3R 22583987..22584193 560..354 1035 100 Minus
3R 32079331 3R 22584250..22584437 355..168 940 100 Minus
3R 32079331 3R 22584492..22584644 169..17 765 100 Minus
3R 32079331 3R 22583595..22583642 837..790 240 100 Minus
3R 32079331 3R 22583469..22583523 891..838 225 98.2 Minus
Blast to na_te.dros performed on 2015-02-12 01:08:16 has no hits.

BS05825.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:33 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-PA 1..876 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:30 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-PA 1..876 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:42 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 66..955 9..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:15 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 66..955 9..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:15 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22583988..22584191 356..559 100 <- Minus
3R 22584250..22584435 170..355 100 <- Minus
3R 22584492..22584653 9..169 97   Minus
3R 22583464..22583523 838..896 95 <- Minus
3R 22583595..22583641 791..837 100 <- Minus
3R 22583699..22583929 560..790 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:42 Download gff for BS05825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18409186..18409245 838..896 95 <- Minus
arm_3R 18409317..18409363 791..837 100 <- Minus
arm_3R 18409421..18409651 560..790 100 <- Minus
arm_3R 18409710..18409913 356..559 100 <- Minus
arm_3R 18409972..18410157 170..355 100 <- Minus
arm_3R 18410214..18410375 9..169 97   Minus

BS05825.complete Sequence

908 bp (908 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635246

> BS05825.complete
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTTGC
AGCTTCAAGATTTCCGAGCAAACAAATTCAGAGTTCCAATAAAAGCTTTC
TAGACCAT

BS05825.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-RA 876 CG33107-PA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-RA 1067 CG33107-RA 75..950 17..892 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22583699..22583929 790..560 1155 100 Minus
3R 32079331 3R 22583987..22584193 560..354 1035 100 Minus
3R 32079331 3R 22584250..22584437 355..168 940 100 Minus
3R 32079331 3R 22584492..22584644 169..17 765 100 Minus
3R 32079331 3R 22583469..22583523 892..838 275 100 Minus
3R 32079331 3R 22583595..22583642 837..790 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:22:16 has no hits.

BS05825.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:01 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:33 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 160..1049 9..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:19 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 75..948 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:01 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 160..1049 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:11 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
CG33107-RA 75..948 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:11 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22583699..22583929 560..790 100 <- Minus
3R 22583988..22584191 356..559 100 <- Minus
3R 22584250..22584435 170..355 100 <- Minus
3R 22584492..22584644 17..169 100   Minus
3R 22583471..22583523 838..890 100 <- Minus
3R 22583595..22583641 791..837 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:19 Download gff for BS05825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18409193..18409245 838..890 100 <- Minus
arm_3R 18409317..18409363 791..837 100 <- Minus
arm_3R 18409421..18409651 560..790 100 <- Minus
arm_3R 18409710..18409913 356..559 100 <- Minus
arm_3R 18409972..18410157 170..355 100 <- Minus
arm_3R 18410214..18410366 17..169 100   Minus

BS05825.pep Sequence

Translation from 16 to 891

> BS05825.pep
MNLSDSSLNNSLVEVDEMRLGYDHESIMSFLRKSSIKHLFPYAAETTDGK
QLLNRMMATLAGKLELNLQQLLDLFTLSIMMMTYQRDNVLLMKERYMMVD
VVCHLAESLDSEEMFYMASGLYENLITGVGMERLERVLDLQAAIPAMVES
CHLGNDVAMALLLTIMGRYTGEPVELDQKEYALKAFEMAKTVNWRQLANS
GRQADLFMLIRTFSMIINCRRIREECPDWKDNLGAEIHKYFLQVRMDHSA
AYGDFEMMIERFIAYCVVRGASTTPQLCSFKISEQTNSEFQ*

BS05825.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33107-PA 291 CG33107-PA 1..291 1..291 1488 100 Plus