Clone Sequence Records
BS05825.3prime Sequence
813 bp (789 high quality bases) assembled on 2005-12-03
> BS05825.3prime
ATGGTCTAGAAAGCTTTTATTGGAACTCTGAATTTGTTTGCTCGGAAATC
TTGAAGCTGCAAAGTTGGGGTGTTGTTGAGGCGCCCCGAACCACGCAATA
AGCTATGAATCGTTCAATCATCATTTCAAAGTCGCCATAGGCGGCGGAGT
GATCCATGCGCACCTGCAGGAAGTACTTGTGTATCTCGGCACCCAGATTG
TCCTTCCAATCAGGACACTCCTCGCGTATACGTCTGCAATTGATGATCAT
GCTGAAAGTGCGGATGAGCATAAACAAATCTGCCTGGCGTCCACTGTTTG
CCAACTGGCGCCAGTTGACCGTTTTGGCCATTTCAAAAGCCTTGAGAGCA
TATTCCTTCTGGTCCAGTTCAACTGGTTCTCCCGTGTACCGTCCCATTAT
GGTGAGTAGCAGGGCCATAGCTACATCGTTGCCAAGATGGCAGGATTCTA
CCATGGCGGGAATCGCGGCCTGCAGGTCCAGCACTCTTTCCAGGCGCTCC
ATACCCACGCCAGTGATAAGGTTTTCGTACAACCCACTGGCCATGTAGAA
CATCTCCTCCGAGTCCAGGGACTCTGCCAGGTGACACACCACATCCACCA
TCATGTAGCGCTCCTTCATCAGCAGAACGTTGTCCCTTTGGTACGTCATC
ATCATAATGGAGAGGGTAAACAGATCGAGCAGCTGCTGCAAATTGAGTTC
CAGCTTCCCGGCTAAGGTAGCCATCATGCGATTCAGCAACTGTTTGCCGT
CTGTGGTTTCTGCAGCGTAAGGAAACAAATGCTTGATGGACGACTTCCGG
AGAAAGGACATGA
BS05825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 876 | CG33107-RA | 80..876 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 154..950 | 813..17 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 119..349 | 1155 | 100 | Plus |
3R | 32079331 | 3R | 22583987..22584193 | 349..555 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 22584250..22584437 | 554..741 | 940 | 100 | Plus |
3R | 32079331 | 3R | 22584492..22584565 | 740..813 | 370 | 100 | Plus |
3R | 32079331 | 3R | 22583469..22583523 | 17..71 | 275 | 100 | Plus |
3R | 32079331 | 3R | 22583595..22583642 | 72..119 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:10:50 has no hits.
BS05825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:32 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 81..876 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:29 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 81..876 | 17..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:11 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 155..955 | 12..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:49 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 155..955 | 12..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:49 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22583464..22583523 | 12..71 | 96 | <- | Plus |
3R | 22583595..22583641 | 72..118 | 100 | <- | Plus |
3R | 22583699..22583929 | 119..349 | 100 | <- | Plus |
3R | 22583988..22584191 | 350..553 | 100 | <- | Plus |
3R | 22584250..22584435 | 554..739 | 100 | <- | Plus |
3R | 22584492..22584564 | 740..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:11 Download gff for
BS05825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18409186..18409245 | 12..71 | 96 | <- | Plus |
arm_3R | 18409317..18409363 | 72..118 | 100 | <- | Plus |
arm_3R | 18409421..18409651 | 119..349 | 100 | <- | Plus |
arm_3R | 18409710..18409913 | 350..553 | 100 | <- | Plus |
arm_3R | 18409972..18410157 | 554..739 | 100 | <- | Plus |
arm_3R | 18410214..18410286 | 740..812 | 100 | | Plus |
BS05825.5prime Sequence
905 bp (830 high quality bases) assembled on 2005-12-03
> BS05825.5prime
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTTGC
AGCTTCAAGATTTCCGAGCAACAAATTCAGAGTTCCAATAAAAGCTTTCT
AGACC
BS05825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 876 | CG33107-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 75..950 | 17..891 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 790..560 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 22583987..22584193 | 560..354 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 22584250..22584437 | 355..168 | 940 | 100 | Minus |
3R | 32079331 | 3R | 22584492..22584644 | 169..17 | 765 | 100 | Minus |
3R | 32079331 | 3R | 22583595..22583642 | 837..790 | 240 | 100 | Minus |
3R | 32079331 | 3R | 22583469..22583523 | 891..838 | 225 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:08:16 has no hits.
BS05825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:33 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:30 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:55:42 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 66..955 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:15 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 66..955 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:15 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22583988..22584191 | 356..559 | 100 | <- | Minus |
3R | 22584250..22584435 | 170..355 | 100 | <- | Minus |
3R | 22584492..22584653 | 9..169 | 97 | | Minus |
3R | 22583464..22583523 | 838..896 | 95 | <- | Minus |
3R | 22583595..22583641 | 791..837 | 100 | <- | Minus |
3R | 22583699..22583929 | 560..790 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:55:42 Download gff for
BS05825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18409186..18409245 | 838..896 | 95 | <- | Minus |
arm_3R | 18409317..18409363 | 791..837 | 100 | <- | Minus |
arm_3R | 18409421..18409651 | 560..790 | 100 | <- | Minus |
arm_3R | 18409710..18409913 | 356..559 | 100 | <- | Minus |
arm_3R | 18409972..18410157 | 170..355 | 100 | <- | Minus |
arm_3R | 18410214..18410375 | 9..169 | 97 | | Minus |
BS05825.complete Sequence
908 bp (908 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635246
> BS05825.complete
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTTGC
AGCTTCAAGATTTCCGAGCAAACAAATTCAGAGTTCCAATAAAAGCTTTC
TAGACCAT
BS05825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 876 | CG33107-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 75..950 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 790..560 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 22583987..22584193 | 560..354 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 22584250..22584437 | 355..168 | 940 | 100 | Minus |
3R | 32079331 | 3R | 22584492..22584644 | 169..17 | 765 | 100 | Minus |
3R | 32079331 | 3R | 22583469..22583523 | 892..838 | 275 | 100 | Minus |
3R | 32079331 | 3R | 22583595..22583642 | 837..790 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:16 has no hits.
BS05825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:01 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:33 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 160..1049 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:19 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 75..948 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:01 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 160..1049 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:11 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 75..948 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:11 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22583699..22583929 | 560..790 | 100 | <- | Minus |
3R | 22583988..22584191 | 356..559 | 100 | <- | Minus |
3R | 22584250..22584435 | 170..355 | 100 | <- | Minus |
3R | 22584492..22584644 | 17..169 | 100 | | Minus |
3R | 22583471..22583523 | 838..890 | 100 | <- | Minus |
3R | 22583595..22583641 | 791..837 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:19 Download gff for
BS05825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18409193..18409245 | 838..890 | 100 | <- | Minus |
arm_3R | 18409317..18409363 | 791..837 | 100 | <- | Minus |
arm_3R | 18409421..18409651 | 560..790 | 100 | <- | Minus |
arm_3R | 18409710..18409913 | 356..559 | 100 | <- | Minus |
arm_3R | 18409972..18410157 | 170..355 | 100 | <- | Minus |
arm_3R | 18410214..18410366 | 17..169 | 100 | | Minus |
BS05825.pep Sequence
Translation from 16 to 891
> BS05825.pep
MNLSDSSLNNSLVEVDEMRLGYDHESIMSFLRKSSIKHLFPYAAETTDGK
QLLNRMMATLAGKLELNLQQLLDLFTLSIMMMTYQRDNVLLMKERYMMVD
VVCHLAESLDSEEMFYMASGLYENLITGVGMERLERVLDLQAAIPAMVES
CHLGNDVAMALLLTIMGRYTGEPVELDQKEYALKAFEMAKTVNWRQLANS
GRQADLFMLIRTFSMIINCRRIREECPDWKDNLGAEIHKYFLQVRMDHSA
AYGDFEMMIERFIAYCVVRGASTTPQLCSFKISEQTNSEFQ*
BS05825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 291 | CG33107-PA | 1..291 | 1..291 | 1488 | 100 | Plus |