Clone BS05826 Report

Search the DGRC for BS05826

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG5107-RA
Protein status:BS05826.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05826.3prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS05826.3prime
ATGGTCTAGAAAGCTTTTACATAGACTCGATGCAGACATCAATGTTGGGC
AGAAAAGAGTTAAAGGACGCTGTAACTTTATTGGTGGCATTTACGAAGCA
GGAACTGGTATCGGCTGGCAATTTGGCAATCAGTTTTAGGGTTTTATTGA
TCTTTCGGGTCAGCCTCATGGATGCCTTGAACAATTTCCAGAAGCATTTG
GCCGAGTTTTTGATGGACGAGCCCACGGACTTATCCGTGGCACAAAGTTT
CGAATGCAGATGCAAAATATCGTCGCAGATTTTGATAATCTCCTTAACGG
AGTCCACAATCTTGGCCACATCCTTGGGAATGGCAGTGCCACAGGCATCA
ATAGCATCCACATAGCTGGTGCATGAACTAAGGATGTTTGTCACCTCCTT
GATAATACAGTTGGTGCCTCGAACCGTTTTCAATGCCTTGCGAAGGATTT
TAAGGCATGTTCTAATAAAGCCCTGTGCCTCCACATCCATGTAGTCAGTG
TCATTGTCCAGTTCATCCAGCAACTGCTCCAATTCCGATTCAAAGTCGAA
ATCATAGTCGAAGTTCTCGTTCTCCAGCAATTCTATTGCATTGGCCCGCG
TGGTCAGCAGACAGGTGGCCGAAACCAGAACCAAAAGGCAAACGGTGATG
GCTTTCATGTCGACTGATAACT

BS05826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-PA 642 CG5107-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-RA 681 CG5107-RA 27..669 658..16 3215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25505339..25505919 596..16 2905 100 Minus
3R 32079331 3R 25505217..25505280 658..595 320 100 Minus
Blast to na_te.dros performed on 2015-01-30 15:17:08 has no hits.

BS05826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:34 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:31 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:49 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 2..653 11..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:11 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 20..675 11..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:11 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25505210..25505279 596..666 95 -> Minus
3R 25505340..25505925 11..595 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:49 Download gff for BS05826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21330932..21331001 596..666 95 -> Minus
arm_3R 21331062..21331647 11..595 99   Minus

BS05826.5prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS05826.5prime
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGTAAAAGCTTTCTAGACC

BS05826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-PA 642 CG5107-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-RA 681 CG5107-RA 27..669 17..659 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25505339..25505919 79..659 2905 100 Plus
3R 32079331 3R 25505217..25505280 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:47:10 has no hits.

BS05826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:35 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:33 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:41 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 2..653 15..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:19:41 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 20..675 9..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:19:41 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25505210..25505279 9..79 95 -> Plus
3R 25505340..25505925 80..664 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:41 Download gff for BS05826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21330932..21331001 9..79 95 -> Plus
arm_3R 21331062..21331647 80..664 99   Plus

BS05826.complete Sequence

674 bp (674 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635247

> BS05826.complete
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGTAAAAGCTTTCTAGACCAT

BS05826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-RA 642 CG5107-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-RA 681 CG5107-RA 27..669 17..659 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25505339..25505919 79..659 2905 100 Plus
3R 32079331 3R 25505217..25505280 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:24 has no hits.

BS05826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:02 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:35 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 3..646 15..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:04 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 5..644 17..656 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:02 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 3..646 15..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:50 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
CG5107-RA 27..666 17..656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:50 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25505217..25505279 17..79 100 -> Plus
3R 25505340..25505916 80..656 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:04 Download gff for BS05826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21330939..21331001 17..79 100 -> Plus
arm_3R 21331062..21331638 80..656 100   Plus

BS05826.pep Sequence

Translation from 16 to 657

> BS05826.pep
MKAITVCLLVLVSATCLLTTRANAIELLENENFDYDFDFESELEQLLDEL
DNDTDYMDVEAQGFIRTCLKILRKALKTVRGTNCIIKEVTNILSSCTSYV
DAIDACGTAIPKDVAKIVDSVKEIIKICDDILHLHSKLCATDKSVGSSIK
NSAKCFWKLFKASMRLTRKINKTLKLIAKLPADTSSCFVNATNKVTASFN
SFLPNIDVCIESM*

BS05826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5107-PA 213 CG5107-PA 1..213 1..213 1084 100 Plus
CG8664-PB 214 CG8664-PB 1..213 1..213 415 43 Plus
CG8664-PA 214 CG8664-PA 1..213 1..213 415 43 Plus
CG8661-PA 198 CG8661-PA 31..193 49..209 231 32.1 Plus