Clone Sequence Records
BS05826.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS05826.3prime
ATGGTCTAGAAAGCTTTTACATAGACTCGATGCAGACATCAATGTTGGGC
AGAAAAGAGTTAAAGGACGCTGTAACTTTATTGGTGGCATTTACGAAGCA
GGAACTGGTATCGGCTGGCAATTTGGCAATCAGTTTTAGGGTTTTATTGA
TCTTTCGGGTCAGCCTCATGGATGCCTTGAACAATTTCCAGAAGCATTTG
GCCGAGTTTTTGATGGACGAGCCCACGGACTTATCCGTGGCACAAAGTTT
CGAATGCAGATGCAAAATATCGTCGCAGATTTTGATAATCTCCTTAACGG
AGTCCACAATCTTGGCCACATCCTTGGGAATGGCAGTGCCACAGGCATCA
ATAGCATCCACATAGCTGGTGCATGAACTAAGGATGTTTGTCACCTCCTT
GATAATACAGTTGGTGCCTCGAACCGTTTTCAATGCCTTGCGAAGGATTT
TAAGGCATGTTCTAATAAAGCCCTGTGCCTCCACATCCATGTAGTCAGTG
TCATTGTCCAGTTCATCCAGCAACTGCTCCAATTCCGATTCAAAGTCGAA
ATCATAGTCGAAGTTCTCGTTCTCCAGCAATTCTATTGCATTGGCCCGCG
TGGTCAGCAGACAGGTGGCCGAAACCAGAACCAAAAGGCAAACGGTGATG
GCTTTCATGTCGACTGATAACT
BS05826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 642 | CG5107-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..669 | 658..16 | 3215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505919 | 596..16 | 2905 | 100 | Minus |
3R | 32079331 | 3R | 25505217..25505280 | 658..595 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:17:08 has no hits.
BS05826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:34 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:31 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:49 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 2..653 | 11..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:11 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 20..675 | 11..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:11 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505210..25505279 | 596..666 | 95 | -> | Minus |
3R | 25505340..25505925 | 11..595 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:49 Download gff for
BS05826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330932..21331001 | 596..666 | 95 | -> | Minus |
arm_3R | 21331062..21331647 | 11..595 | 99 | | Minus |
BS05826.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS05826.5prime
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGTAAAAGCTTTCTAGACC
BS05826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 642 | CG5107-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..669 | 17..659 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505919 | 79..659 | 2905 | 100 | Plus |
3R | 32079331 | 3R | 25505217..25505280 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:47:10 has no hits.
BS05826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:35 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:33 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:41 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 2..653 | 15..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:19:41 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 20..675 | 9..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:19:41 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505210..25505279 | 9..79 | 95 | -> | Plus |
3R | 25505340..25505925 | 80..664 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:41 Download gff for
BS05826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330932..21331001 | 9..79 | 95 | -> | Plus |
arm_3R | 21331062..21331647 | 80..664 | 99 | | Plus |
BS05826.complete Sequence
674 bp (674 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635247
> BS05826.complete
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGTAAAAGCTTTCTAGACCAT
BS05826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 642 | CG5107-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..669 | 17..659 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505919 | 79..659 | 2905 | 100 | Plus |
3R | 32079331 | 3R | 25505217..25505280 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:24 has no hits.
BS05826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:22:02 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:35 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:04 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 5..644 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:22:02 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:50 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 27..666 | 17..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:50 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505217..25505279 | 17..79 | 100 | -> | Plus |
3R | 25505340..25505916 | 80..656 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:04 Download gff for
BS05826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330939..21331001 | 17..79 | 100 | -> | Plus |
arm_3R | 21331062..21331638 | 80..656 | 100 | | Plus |
BS05826.pep Sequence
Translation from 16 to 657
> BS05826.pep
MKAITVCLLVLVSATCLLTTRANAIELLENENFDYDFDFESELEQLLDEL
DNDTDYMDVEAQGFIRTCLKILRKALKTVRGTNCIIKEVTNILSSCTSYV
DAIDACGTAIPKDVAKIVDSVKEIIKICDDILHLHSKLCATDKSVGSSIK
NSAKCFWKLFKASMRLTRKINKTLKLIAKLPADTSSCFVNATNKVTASFN
SFLPNIDVCIESM*
BS05826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 213 | CG5107-PA | 1..213 | 1..213 | 1084 | 100 | Plus |
CG8664-PB | 214 | CG8664-PB | 1..213 | 1..213 | 415 | 43 | Plus |
CG8664-PA | 214 | CG8664-PA | 1..213 | 1..213 | 415 | 43 | Plus |
CG8661-PA | 198 | CG8661-PA | 31..193 | 49..209 | 231 | 32.1 | Plus |