Clone BS05833 Report

Search the DGRC for BS05833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG30412-RA
Protein status:BS05833.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05833.3prime Sequence

908 bp (830 high quality bases) assembled on 2005-12-03

> BS05833.3prime
ATGGTCTAGAAAGCTTCTATTCAAAGCTGCGACCCATCCTGGACAGCACC
GGAGGCATCCACTCCTCGAACTCGGGAATATCGAACAGCGGGTGCTGGTT
GAGGATGTCGAAACGCACCACCTTGTACGTGGAGACGAGCCACTGGCCCA
TGCAGCGACTGTTGTCCTGCACATTGCCCATTCTCGAGGGTTCCACGGAA
TAGTCGCGTCGGAAGCGCATGAACACCTCGGCGAAGATCAGGGGATGGGG
CACCCTTAACTGAGCGGGATCTATGAACTCCTTTAGCAGCTCCGTCATCT
CACTAAGTTCCGCCGGCGAGCGAAAGTCATTGGATCTCCGCAGGGCCACG
AAGACCACGTCCAGGAAGGCGAAACGATGGTCGTAGTGCCGCAGCAGCTG
CACCTTGAGCGGAATGGCCCGCCGGAAGTGCTCCTTCTCGAAGCGCATCA
TTTTGAGCCTCCAGTCGGGCGGATCATCCAACAGATCGTGCTTGATCTGC
TTGAAACCCATAGGCGTACTGCATCGCTCCACATTCCGATTGCGGCGGCG
CCTTACGAAGTCCGTAAAAACGGCGGCTGCCTGGCTCGAATTCTCAATGA
ACTTCTGCTCGGAGAAGTCCCAGTCCCAAAGGAGCTTCAGCCGGAGGAGA
GCCAACTTGGTGGTCAATCGGCGGGACTTATTTGCACCATTGGCACATCC
TTTCCCGAAGCACTCTGGTGATGTCCCGTTGAGGTCGCAGTTCGCCTGGA
AGCCCGAATCAAATGCCGCAGCACATGACCATAGCGGGTGCACTTGTCCA
TCAGCAACCGGTGTATCCACATCATTCCATAGTTAAATTTGTTTTGAATT
TTGTCTATTTAAAAAGCCCGATAATCAAATTGAACGGAATACATGTCGAC
TGATAACT

BS05833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 879 CG30412-RA 28..879 868..17 4235 99.8 Minus
CG30412-PB 906 CG30412-RB 251..906 672..17 3280 100 Minus
CG30412-PB 906 CG30412-RB 1..154 825..672 770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 10..891 896..16 4340 99.5 Minus
CG30412-RC 1072 CG30412-RC 10..900 896..16 4240 98.5 Minus
CG30412-RB 1160 CG30412-RB 332..988 672..16 3285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318361..23319017 16..672 3285 100 Plus
2R 25286936 2R 23319114..23319339 672..896 1035 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 19:18:29 has no hits.

BS05833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:44 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..879 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:44 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..879 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:17 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..901 6..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:46 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..901 6..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:46 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23318351..23319016 6..671 99 <- Plus
2R 23319114..23319341 672..899 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:17 Download gff for BS05833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19205874..19206539 6..671 99 <- Plus
arm_2R 19206637..19206864 672..899 97   Plus

BS05833.5prime Sequence

909 bp (889 high quality bases) assembled on 2005-12-03

> BS05833.5prime
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAATAGAAGCT
TTCTAGACC

BS05833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 879 CG30412-RA 1..879 17..895 4395 100 Plus
CG30412-PB 906 CG30412-RB 251..906 240..895 3280 100 Plus
CG30412-PB 906 CG30412-RB 1..154 87..240 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 10..891 15..896 4410 100 Plus
CG30412-RC 1072 CG30412-RC 10..900 15..896 4310 99 Plus
CG30412-RB 1160 CG30412-RB 332..988 240..896 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318361..23319017 896..240 3285 100 Minus
2R 25286936 2R 23319114..23319339 240..15 1130 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:21:08 has no hits.

BS05833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:45 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:46 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:07 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..902 12..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:05 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..902 12..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:05 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23318347..23319016 241..909 99 <- Minus
2R 23319114..23319341 12..240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:07 Download gff for BS05833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19205870..19206539 241..909 99 <- Minus
arm_2R 19206637..19206864 12..240 99   Minus

BS05833.complete Sequence

911 bp (911 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635248

> BS05833.complete
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAATAGAAGCT
TTCTAGACCAT

BS05833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 879 CG30412-PA 1..879 17..895 4395 100 Plus
CG30412-RC 888 CG30412-PC 1..888 17..895 4270 99 Plus
CG30412-RB 906 CG30412-PB 251..906 240..895 3280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 10..891 15..896 4410 100 Plus
CG30412-RC 1072 CG30412-RC 10..900 15..896 4285 99 Plus
CG30412-RB 1160 CG30412-RB 332..988 240..896 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318361..23319017 896..240 3285 100 Minus
2R 25286936 2R 23319114..23319339 240..15 1130 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:39:16 has no hits.

BS05833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:46 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:10 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..901 12..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:45 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 12..890 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:46 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..901 12..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:41 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 12..890 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:41 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23318362..23319016 241..895 100 <- Minus
2R 23319114..23319337 17..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:45 Download gff for BS05833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19205885..19206539 241..895 100 <- Minus
arm_2R 19206637..19206860 17..240 100   Minus

BS05833.pep Sequence

Translation from 16 to 894

> BS05833.pep
MYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDSGFQ
ANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQKFI
ENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRLKMM
RFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAELSEM
TELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSRCMG
QWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFE*

BS05833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 292 CG30412-PA 1..292 1..292 1566 100 Plus
CG30412-PC 295 CG30412-PC 1..295 1..292 1552 99 Plus
CG30412-PB 301 CG30412-PB 85..301 76..292 1149 100 Plus
CG3092-PA 347 CG3092-PA 83..258 72..242 376 40.9 Plus