Clone Sequence Records
BS05833.3prime Sequence
908 bp (830 high quality bases) assembled on 2005-12-03
> BS05833.3prime
ATGGTCTAGAAAGCTTCTATTCAAAGCTGCGACCCATCCTGGACAGCACC
GGAGGCATCCACTCCTCGAACTCGGGAATATCGAACAGCGGGTGCTGGTT
GAGGATGTCGAAACGCACCACCTTGTACGTGGAGACGAGCCACTGGCCCA
TGCAGCGACTGTTGTCCTGCACATTGCCCATTCTCGAGGGTTCCACGGAA
TAGTCGCGTCGGAAGCGCATGAACACCTCGGCGAAGATCAGGGGATGGGG
CACCCTTAACTGAGCGGGATCTATGAACTCCTTTAGCAGCTCCGTCATCT
CACTAAGTTCCGCCGGCGAGCGAAAGTCATTGGATCTCCGCAGGGCCACG
AAGACCACGTCCAGGAAGGCGAAACGATGGTCGTAGTGCCGCAGCAGCTG
CACCTTGAGCGGAATGGCCCGCCGGAAGTGCTCCTTCTCGAAGCGCATCA
TTTTGAGCCTCCAGTCGGGCGGATCATCCAACAGATCGTGCTTGATCTGC
TTGAAACCCATAGGCGTACTGCATCGCTCCACATTCCGATTGCGGCGGCG
CCTTACGAAGTCCGTAAAAACGGCGGCTGCCTGGCTCGAATTCTCAATGA
ACTTCTGCTCGGAGAAGTCCCAGTCCCAAAGGAGCTTCAGCCGGAGGAGA
GCCAACTTGGTGGTCAATCGGCGGGACTTATTTGCACCATTGGCACATCC
TTTCCCGAAGCACTCTGGTGATGTCCCGTTGAGGTCGCAGTTCGCCTGGA
AGCCCGAATCAAATGCCGCAGCACATGACCATAGCGGGTGCACTTGTCCA
TCAGCAACCGGTGTATCCACATCATTCCATAGTTAAATTTGTTTTGAATT
TTGTCTATTTAAAAAGCCCGATAATCAAATTGAACGGAATACATGTCGAC
TGATAACT
BS05833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 879 | CG30412-RA | 28..879 | 868..17 | 4235 | 99.8 | Minus |
CG30412-PB | 906 | CG30412-RB | 251..906 | 672..17 | 3280 | 100 | Minus |
CG30412-PB | 906 | CG30412-RB | 1..154 | 825..672 | 770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 10..891 | 896..16 | 4340 | 99.5 | Minus |
CG30412-RC | 1072 | CG30412-RC | 10..900 | 896..16 | 4240 | 98.5 | Minus |
CG30412-RB | 1160 | CG30412-RB | 332..988 | 672..16 | 3285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318361..23319017 | 16..672 | 3285 | 100 | Plus |
2R | 25286936 | 2R | 23319114..23319339 | 672..896 | 1035 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:18:29 has no hits.
BS05833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:44 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..879 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:44 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..879 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:17 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..901 | 6..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:46 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..901 | 6..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:46 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23318351..23319016 | 6..671 | 99 | <- | Plus |
2R | 23319114..23319341 | 672..899 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:17 Download gff for
BS05833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19205874..19206539 | 6..671 | 99 | <- | Plus |
arm_2R | 19206637..19206864 | 672..899 | 97 | | Plus |
BS05833.5prime Sequence
909 bp (889 high quality bases) assembled on 2005-12-03
> BS05833.5prime
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAATAGAAGCT
TTCTAGACC
BS05833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 879 | CG30412-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG30412-PB | 906 | CG30412-RB | 251..906 | 240..895 | 3280 | 100 | Plus |
CG30412-PB | 906 | CG30412-RB | 1..154 | 87..240 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 10..891 | 15..896 | 4410 | 100 | Plus |
CG30412-RC | 1072 | CG30412-RC | 10..900 | 15..896 | 4310 | 99 | Plus |
CG30412-RB | 1160 | CG30412-RB | 332..988 | 240..896 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318361..23319017 | 896..240 | 3285 | 100 | Minus |
2R | 25286936 | 2R | 23319114..23319339 | 240..15 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:21:08 has no hits.
BS05833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:45 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:46 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:37:07 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..902 | 12..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:05 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..902 | 12..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:05 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23318347..23319016 | 241..909 | 99 | <- | Minus |
2R | 23319114..23319341 | 12..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:37:07 Download gff for
BS05833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19205870..19206539 | 241..909 | 99 | <- | Minus |
arm_2R | 19206637..19206864 | 12..240 | 99 | | Minus |
BS05833.complete Sequence
911 bp (911 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635248
> BS05833.complete
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAATAGAAGCT
TTCTAGACCAT
BS05833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 879 | CG30412-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG30412-RC | 888 | CG30412-PC | 1..888 | 17..895 | 4270 | 99 | Plus |
CG30412-RB | 906 | CG30412-PB | 251..906 | 240..895 | 3280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 10..891 | 15..896 | 4410 | 100 | Plus |
CG30412-RC | 1072 | CG30412-RC | 10..900 | 15..896 | 4285 | 99 | Plus |
CG30412-RB | 1160 | CG30412-RB | 332..988 | 240..896 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318361..23319017 | 896..240 | 3285 | 100 | Minus |
2R | 25286936 | 2R | 23319114..23319339 | 240..15 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:39:16 has no hits.
BS05833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:46 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:10 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..901 | 12..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:45 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 12..890 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:46 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..901 | 12..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:41 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 12..890 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:41 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23318362..23319016 | 241..895 | 100 | <- | Minus |
2R | 23319114..23319337 | 17..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:45 Download gff for
BS05833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19205885..19206539 | 241..895 | 100 | <- | Minus |
arm_2R | 19206637..19206860 | 17..240 | 100 | | Minus |
BS05833.pep Sequence
Translation from 16 to 894
> BS05833.pep
MYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDSGFQ
ANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQKFI
ENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRLKMM
RFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAELSEM
TELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSRCMG
QWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFE*
BS05833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 292 | CG30412-PA | 1..292 | 1..292 | 1566 | 100 | Plus |
CG30412-PC | 295 | CG30412-PC | 1..295 | 1..292 | 1552 | 99 | Plus |
CG30412-PB | 301 | CG30412-PB | 85..301 | 76..292 | 1149 | 100 | Plus |
CG3092-PA | 347 | CG3092-PA | 83..258 | 72..242 | 376 | 40.9 | Plus |