Clone Sequence Records
BS05834.3prime Sequence
828 bp (683 high quality bases) assembled on 2005-12-03
> BS05834.3prime
ATGGTCTAGAAAGCTTTTACAGGGGTATATTGTTGTCCAAAGTGTTACCA
TCTTCATCGCTTTCCTCGCTGTCTAAATCATTGTTAGCATCCCGCCAGTC
GCACAAGCTGGGGAACTTTTCGCTGATTCGATGCTGGGGGCATTTAGATC
CCGCCGGACCAGATTGGTAGATGGGTTCGTTGAAAATGTTGTTATAGTCA
TAGTTGCACGTCAACATGAACTGGAAGCGATTGGATTTGGGCTCCAGGAA
ACGGACACCGGCACAGCCGACGCGATTAACTCGATCCGAAACAAGTAATG
TGAAGTGACCAATTTTCTTGCCTTGCGGATGTGGATGATATCTATCGATG
AAGCTCTGATTGGCATCCTGATGTTCGCGGAACCAGTTGATCACGAAGGA
TTTCATGCGTCGCGAATGCGATTTGAACTCTCTTCCAATCCAAAAGTAAC
CAATATTTTGACCACTAAACTTGAAACGCGGTGTATTCCGGCACTTGTCG
TGCGCGAATTGGCAGCGTTTGGCATGCAAGGCGGCCATTTGCTCCAGTTC
GGTATCCCAACGCAGAAGCGGCATATGTGCGGCGCTTCTATAGCCATCCA
GATTTCCGCTGGCGATCTTCGATCTGGCCAAATTGTGCATGTCCAACAGG
AGCTGACGTCGCCTCTCGCTCATTTCCAGGAGCTTGGGTTCCGGTCCACA
GGCGGGTGAAAAGCTGCCATTGTTGCCACATGCGGTATGCGGCACATGCA
CCAAATGCGTTCCATTGTACAGCTCACAAAGTGCAGCCGCACAGTAGCCG
CCAGAGGACGCTGGAGTAGTGGTGGTTA
BS05834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-PA | 927 | CG9400-RA | 116..927 | 828..17 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-RA | 1156 | CG9400-RA | 145..958 | 828..15 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14288742..14289249 | 321..828 | 2540 | 100 | Plus |
| X | 23542271 | X | 14288282..14288588 | 15..321 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:49:47 has no hits.
BS05834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:46 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-PA | 117..927 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:47 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-PA | 117..927 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:29:24 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 126..938 | 15..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:53 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 146..958 | 15..827 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:53 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14288282..14288587 | 15..320 | 100 | <- | Plus |
| X | 14288742..14289248 | 321..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:29:24 Download gff for
BS05834.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14182315..14182620 | 15..320 | 100 | <- | Plus |
| arm_X | 14182775..14183281 | 321..827 | 100 | | Plus |
BS05834.5prime Sequence
919 bp (718 high quality bases) assembled on 2005-12-03
> BS05834.5prime
GAAGTTATCAGTCGACATGCCGAGATTGTTGAGCAAGTGCAGCGTGTTTG
CCCTTTGGGCGCCTGCAGTGCTCCTCTTTGTTTTGGCTTGCGAAAAGGGA
TTAGCCGGAGCTCAGACCTTAATCGAAACTATAACCACCACTACTCCAGC
GTCCTCTGGCGGCTACTGTGCGGCTGCACTTTGTGAGCTGTACAATGGAA
CGCATTTGGTGCATGTGCCGCATACCGCATGTGGCAACAATGGCAGCTTT
TCACCCGCCTGTGGACCGGAACCCAAGCTCCTGGAAATGAGCGAGAGGCG
ACGTCAGCTCCTGTTGGACATGCACAATTTGGCCAGATCGAAGATCGCCA
GCGGAAATCTGGATGGCTATAGAAGCGCCGCACATATGCCGCTTCTGCGT
TGGGATACCGAACTGGAGCAAATGGCCGCCTTGCATGCCAAACGCTGCCA
ATTCGCGCACGACAAGTGCCGGAATACACCGCGTTTCAAGTTTAGTGGTC
AAAATATTGGTTACTTTTGGATTGGAAGAGAGTTCAAATCGCATTCGCGA
CGCATGAAATCCTTCGTGATCAACTGGTTCCGCGAACATCAGGATGCCAA
TCAGAGCTTCATCGATAGATATCATCCACATCCGCAAGGCAAGAAAATTG
GTCACTTCACATTACTTGTTTCGGATCGAGTTAATCGCGTCGGCTGTGCC
GGTGTCCGTTTCCTGGAGCCCAAATCCAATCGCTTCCAGTTCATGTTGAC
GTGCAACTATGACTATAACAACATTTTCAACGAACCCATCTACCAATCTG
GTCCGGCGGGATCTAAATGCCCCCAGCATCGAATCAGCGAAAAGTTCCCC
AGCTTGTGCGACTGGCGGGATGCTAACAATGATTTAGACAGCGGAGAAAG
CGATGAAGATGGGTACACT
BS05834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-PA | 927 | CG9400-RA | 1..896 | 17..912 | 4430 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-RA | 1156 | CG9400-RA | 24..932 | 11..919 | 4470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14288742..14289370 | 639..11 | 3130 | 99.8 | Minus |
| X | 23542271 | X | 14288308..14288588 | 919..639 | 1345 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:45:58 has no hits.
BS05834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:47 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:48 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:26 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 1..912 | 7..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:44 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 15..932 | 1..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:44 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14288308..14288587 | 640..919 | 98 | <- | Minus |
| X | 14288742..14289379 | 1..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:26 Download gff for
BS05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14182341..14182620 | 640..919 | 98 | <- | Minus |
| arm_X | 14182775..14183412 | 1..639 | 99 | | Minus |
BS05834.complete Sequence
959 bp (959 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635249
> BS05834.complete
GAAGTTATCAGTCGACATGCCGAGATTGTTGAGCAAGTGCAGCGTGTTTG
CCCTTTGGGCGCCTGCAGTGCTCCTCTTTGTTTTGGCTTGCGAAAAGGGA
TTAGCCGGAGCTCAGACCTTAATCGAAACTATAACCACCACTACTCCAGC
GTCCTCTGGCGGCTACTGTGCGGCTGCACTTTGTGAGCTGTACAATGGAA
CGCATTTGGTGCATGTGCCGCATACCGCATGTGGCAACAATGGCAGCTTT
TCACCCGCCTGTGGACCGGAACCCAAGCTCCTGGAAATGAGCGAGAGGCG
ACGTCAGCTCCTGTTGGACATGCACAATTTGGCCAGATCGAAGATCGCCA
GCGGAAATCTGGATGGCTATAGAAGCGCCGCACATATGCCGCTTCTGCGT
TGGGATACCGAACTGGAGCAAATGGCCGCCTTGCATGCCAAACGCTGCCA
ATTCGCGCACGACAAGTGCCGGAATACACCGCGTTTCAAGTTTAGTGGTC
AAAATATTGGTTACTTTTGGATTGGAAGAGAGTTCAAATCGCATTCGCGA
CGCATGAAATCCTTCGTGATCAACTGGTTCCGCGAACATCAGGATGCCAA
TCAGAGCTTCATCGATAGATATCATCCACATCCGCAAGGCAAGAAAATTG
GTCACTTCACATTACTTGTTTCGGATCGAGTTAATCGCGTCGGCTGTGCC
GGTGTCCGTTTCCTGGAGCCCAAATCCAATCGCTTCCAGTTCATGTTGAC
GTGCAACTATGACTATAACAACATTTTCAACGAACCCATCTACCAATCTG
GTCCGGCGGGATCTAAATGCCCCCAGCATCGAATCAGCGAAAAGTTCCCC
AGCTTGTGCGACTGGCGGGATGCTAACAATGATTTAGACAGCGAGGAAAG
CGATGAAGATGGTAACACTTTGGACAACAATATACCCCTGTAAAAGCTTT
CTAGACCAT
BS05834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-RA | 927 | CG9400-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-RA | 1156 | CG9400-RA | 24..958 | 11..945 | 4660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14288742..14289370 | 639..11 | 3130 | 99.8 | Minus |
| X | 23542271 | X | 14288282..14288588 | 945..639 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:45 has no hits.
BS05834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:47 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RB | 154..1095 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:12 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RB | 154..1097 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:51 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 10..934 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:47 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RB | 154..1097 | 1..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:24 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9400-RA | 30..954 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:24 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14288286..14288587 | 640..941 | 100 | <- | Minus |
| X | 14288742..14289364 | 17..639 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:51 Download gff for
BS05834.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14182319..14182620 | 640..941 | 100 | <- | Minus |
| arm_X | 14182775..14183397 | 17..639 | 100 | | Minus |
BS05834.pep Sequence
Translation from 16 to 942
> BS05834.pep
MPRLLSKCSVFALWAPAVLLFVLACEKGLAGAQTLIETITTTTPASSGGY
CAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQLLL
DMHNLARSKIASGNLDGYRSAAHMPLLRWDTELEQMAALHAKRCQFAHDK
CRNTPRFKFSGQNIGYFWIGREFKSHSRRMKSFVINWFREHQDANQSFID
RYHPHPQGKKIGHFTLLVSDRVNRVGCAGVRFLEPKSNRFQFMLTCNYDY
NNIFNEPIYQSGPAGSKCPQHRISEKFPSLCDWRDANNDLDSEESDEDGN
TLDNNIPL*
BS05834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9400-PA | 308 | CG9400-PA | 1..308 | 1..308 | 1680 | 100 | Plus |
| CG32679-PA | 254 | CG32679-PA | 13..248 | 35..288 | 373 | 35.4 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 10..253 | 39..288 | 326 | 29.1 | Plus |
| CG9822-PA | 263 | CG9822-PA | 38..257 | 69..288 | 319 | 32.9 | Plus |
| scpr-A-PA | 264 | CG5207-PA | 18..264 | 45..302 | 318 | 30.5 | Plus |
