Clone Sequence Records
BS05835.3prime Sequence
865 bp (791 high quality bases) assembled on 2005-12-03
> BS05835.3prime
ATGGTCTAGAAAGCTTTCATTTTGGCGGAGCACAGGCGATCGGTAGCCAC
TGGCAAGCCTCCGATGGCGGCGTGTGCATCTGGCCGGGCAGCATCTTCAC
CAGACGACGATCGTCGTCGAACTTTTCGGCAGCACAGAGCGTGAGTTCGC
GCTGCCGGAAGATGAGTGCGTCGCCCGCGTAGGCGATGGTCCAGGTGCTG
GTCGAGGAGCTGGGACTGCCGGAGCGCAGGGCGGCCAAGCGATTGCCCTG
GCTGGGATCGACGAAGTAGTACCACTTGAAGAGCTCGCTACGCAGCGTGA
AGAGCGGCGTGGAGTGCTGCTCCTGGACGAAGGCGCGTGTCAGGCCCGCG
GTATCGGTGAAGTTCTTCTCGCGCCAGGAGAACATCTGCCGCCCATTCAG
ACCGTAGTTCCACTCGTCCGTTATGGTCGTGTAGATGTACTCGCGATCGG
AGCGACTCAGCAGGCAGAATCCCTGCGGATCGAAGAGCAAGTCTAGAACG
GGCGGCAGACGTTGGCTCAATGCCTCCACTCGCTTCTGGAGATCCGCATC
GACGCTGGCGTACATGTGATGGCTCCGGATCTTGCTGACCATGTGCGCGA
CGTTGAACAGGTACGCCTCGCTGCTGTCCTGCATGGCCTGATAGCGCCAG
AAGAGCGCCAATTGCGCCTCGATCATCGTGCGAAAGCTGACCTCGTCGCG
ATCCGCGTACAGTTGCTCCAGCTGCTGCACCAGCTTCTCCAGCGGTCGAT
GGAAGTACACGTCCTCGATGGCGTGCACCAGAATGTCCCTGACCAGGGCG
GGCTCCACACTGGCCGCTATGTACATACCGTATGTCTGAATGCTCTCCTC
GGCGTTCAACAGATT
BS05835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-PA | 1179 | CG32573-RA | 331..1179 | 865..17 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42512-RA | 1782 | CG42512-RA | 826..1674 | 865..17 | 4230 | 99.9 | Minus |
CG32573-RC | 1332 | CG32573-RC | 376..1224 | 865..17 | 4230 | 99.9 | Minus |
CG32573-RA | 1782 | CG32573-RA | 826..1674 | 865..17 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16652319..16653167 | 865..17 | 4230 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:12:49 has no hits.
BS05835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:48 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-PA | 331..1179 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:50 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-PA | 331..1179 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:37 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 826..1676 | 13..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:08 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 826..1676 | 13..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:08 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16652319..16653169 | 13..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:37 Download gff for
BS05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16546352..16547202 | 13..865 | 99 | | Minus |
BS05835.5prime Sequence
953 bp (842 high quality bases) assembled on 2005-12-03
> BS05835.5prime
GAAGTTATCAGTCGACATGATCCAGCTGCTCCAGTTGCTTCTATGTACTA
TTCCACTCGTTGTGGGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAAC
AGTCAAATTACCATACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGT
ATTCCACAGCATCTGGGGCGCCATTCGCTCCGACTTCGCCACCGATACGG
ACAAGGTGAAGGGCCTGTACAGTCAGCTGGGCGGATATATTCGCGACGAT
GTGCAGTGCAGTAGCGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCA
GGAGGTGCGACGCCACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATC
TGTTGAACGCCGAGGAGAGCATTCAGACATACGGTATGTACATAGCGGCC
AGTGTGGAGCCCGCCCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGA
CGTGTACTTCCATCGACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAAC
TGTACGCGGATCGCGACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAA
TTGGCGCTCTTCTGGCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTA
CCTGTTCAACGTCGCGCACATGGTCAGCAAGATCCGGAGCCATCACATGT
ACGCCAGCGTCGATGCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAA
CGTCTGCCGCCCGTTCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCT
GCTGAGTCGCTCCGATCGCGAGTACATCTACACGACCATAACGGACGAGT
GGAACTACGGTCTGAATGGGCGGCAGATGTTCTCCTGGCGCGAGAAGAAC
TTCACCGATACCGCGGGCCTGACACGCGCCTTCGTCCCAGAGCAGCACTC
CACGCCGCTCTTCACGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTTCG
TCG
BS05835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-PA | 1179 | CG32573-RA | 1..937 | 17..953 | 4610 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42512-RA | 1782 | CG42512-RA | 496..1432 | 17..953 | 4640 | 99.7 | Plus |
CG32573-RC | 1332 | CG32573-RC | 46..982 | 17..953 | 4640 | 99.7 | Plus |
CG32573-RA | 1782 | CG32573-RA | 496..1432 | 17..953 | 4640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16652079..16652925 | 107..953 | 4190 | 99.6 | Plus |
X | 23542271 | X | 16651927..16652016 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:16:32 has no hits.
BS05835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:49 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:51 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:35 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 489..1432 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:27:54 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 489..1432 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:27:54 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16651920..16652016 | 9..106 | 96 | -> | Plus |
X | 16652079..16652925 | 107..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:35 Download gff for
BS05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16545953..16546049 | 9..106 | 96 | -> | Plus |
arm_X | 16546112..16546958 | 107..953 | 99 | | Plus |
BS05835.complete Sequence
1211 bp (1211 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635250
> BS05835.complete
GAAGTTATCAGTCGACATGATCCAGCTGCTCCAGTTGCTTCTATGTACTA
TTCCACTCGTTGTGGGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAAC
AGTCAAATTACCATACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGT
ATTCCACAGCATCTGGGGCGCCATTCGCTCCGACTTCGCCACCGATACGG
ACAAGGTGAAGGGCCTGTACAGTCAGCTGGGCGGATATATTCGCGACGAT
GTGCAGTGCAGTAGCGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCA
GGAGGTGCGACGCCACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATC
TGTTGAACGCCGAGGAGAGCATTCAGACATACGGTATGTACATAGCGGCC
AGTGTGGAGCCCGCCCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGA
CGTGTACTTCCATCGACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAAC
TGTACGCGGATCGCGACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAA
TTGGCGCTCTTCTGGCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTA
CCTGTTCAACGTCGCGCACATGGTCAGCAAGATCCGGAGCCATCACATGT
ACGCCAGCGTCGATGCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAA
CGTCTGCCGCCCGTTCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCT
GCTGAGTCGCTCCGATCGCGAGTACATCTACACGACCATAACGGACGAGT
GGAACTACGGTCTGAATGGGCGGCAGATGTTCTCCTGGCGCGAGAAGAAC
TTCACCGATACCGCGGGCCTGACACGCGCCTTCGTCCAGGAGCAGCACTC
CACGCCGCTCTTCACGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTTCG
TCGATCCCAGCCAGGGCAATCGCTTGGCCGCCCTGCGCTCCGGCAGTCCC
AGCTCCTCGACCAGCACCTGGACCATCGCCTACGCGGGCGACGCACTCAT
CTTCCGGCAGCGCGAACTCACGCTCTGTGCTGCCGAAAAGTTCGACGACG
ATCGTCGTCTGGTGAAGATGCTGCCCGGCCAGATGCACACGCCGCCATCG
GAGGCTTGCCAGTGGCTACCGATCGCCTGTGCTCCGCCAAAATGAAAGCT
TTCTAGACCAT
BS05835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-RC | 1179 | CG32573-PC | 1..1179 | 17..1195 | 5880 | 99.9 | Plus |
CG32573-RA | 1179 | CG32573-PA | 1..1179 | 17..1195 | 5880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42512-RA | 1782 | CG42512-RA | 496..1674 | 17..1195 | 5880 | 99.9 | Plus |
CG32573-RC | 1332 | CG32573-RC | 46..1224 | 17..1195 | 5880 | 99.9 | Plus |
CG32573-RA | 1782 | CG32573-RA | 496..1674 | 17..1195 | 5880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16652079..16653167 | 107..1195 | 5430 | 99.9 | Plus |
X | 23542271 | X | 16651927..16652016 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:13 has no hits.
BS05835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:48 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:13 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 489..1676 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:44 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 496..1667 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:48 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 489..1676 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:25 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32573-RA | 496..1667 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:25 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16651927..16652016 | 17..106 | 100 | -> | Plus |
X | 16652079..16653160 | 107..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:44 Download gff for
BS05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16545960..16546049 | 17..106 | 100 | -> | Plus |
arm_X | 16546112..16547193 | 107..1188 | 99 | | Plus |
BS05835.pep Sequence
Translation from 16 to 1194
> BS05835.pep
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*
BS05835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32573-PC | 392 | CG32573-PC | 1..392 | 1..392 | 2033 | 100 | Plus |
CG32573-PA | 392 | CG32573-PA | 1..392 | 1..392 | 2033 | 100 | Plus |