Clone BS05836 Report

Search the DGRC for BS05836

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG9804-RA
Protein status:BS05836.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05836.3prime Sequence

735 bp (734 high quality bases) assembled on 2005-12-03

> BS05836.3prime
ATGGTCTAGAAAGCTTTTATCCGATTTCAGCAGAACTTGCTGGTTTTTTG
GCGTGTTCCTGAAGGCGGCATTCGAAAACTTTAGCGAAACTATTGAGGAG
TGCGCCACTGGCCTCCTCGACAGGAAAATGTCTGTCCAGCTCTTTGCTGA
GCGAGGTGACCCCCTTGCCTTCGATTCCGCAGGGCACAATGTGCTCAAAC
CACTGCAGATCCGTGCAGCAATTGAGGCCGATTCCATGCGTGGTGACGTA
ACGCGAGCCGTGGATACCGATGGCACAGATCTTGTTGTCACCCACCCAGA
TACCGGTGTCCTTGGTCGCCTTGGCACTGGAAATGCCCATCTGGTGGCAG
GCCTCGACAACCATCCGCTCCAACGTCGCCACGTACCAGCGGATGCTCGG
CACGAACTGACCCAGGTGCAGAATGGGATAGGCCACCAACTGGCCGGGGC
CGTGAAATGTGATCAAGCCACCGCGATCTGTGCGATGGAAGTCTGCTCCT
AGCCGGCGGAGTCGGTCTTCATCCTGCGCCGTATAGTCCTTTGTCCTTAG
TCCGACTGTGTAGACCGGGTCGTGCTCCTGAAGCACCAGGTAGTTTCGGA
ACTCCGCTGGCGGATTCAGGATCTGGTTGGACCTTGCAAGACGTTGCTGT
AGCTGTAATCCTGCTGAATAGCTATGCCGCCCGGCCCGCACCACGGTCAC
CAGCGGTCGGACAAAAGGCATGTCGACTGATAACT

BS05836.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PA 705 CG9804-RA 1..705 721..17 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..762 721..17 3525 100 Minus
CG9804-RA 1108 CG9804-RA 223..927 721..17 3525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436403..4437107 17..721 3525 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:29:41 has no hits.

BS05836.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:50 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..721 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:53 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..721 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:37 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 11..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:10 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 11..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:10 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4436396..4437107 11..721 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:37 Download gff for BS05836.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262118..262829 11..721 99   Plus

BS05836.5prime Sequence

735 bp (688 high quality bases) assembled on 2005-12-03

> BS05836.5prime
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGATAAAAGCTTTCTAGACC

BS05836.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PA 705 CG9804-RA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..762 17..721 3525 100 Plus
CG9804-RA 1108 CG9804-RA 223..927 17..721 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436403..4437107 721..17 3525 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:16:00 has no hits.

BS05836.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:51 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:55 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:31 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 17..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:04 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 17..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:04 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4436396..4437107 17..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:31 Download gff for BS05836.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262118..262829 17..727 99   Minus

BS05836.complete Sequence

737 bp (737 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635251

> BS05836.complete
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGATAAAAGCTTTCTAGACCAT

BS05836.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 705 CG9804-PB 1..705 17..721 3525 100 Plus
CG9804-RA 705 CG9804-PA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..762 17..721 3525 100 Plus
CG9804-RA 1108 CG9804-RA 223..927 17..721 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436403..4437107 721..17 3525 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:58:43 has no hits.

BS05836.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:49 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:15 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:26 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..925 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:49 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..934 17..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:23 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..925 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:23 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4436405..4437107 17..719 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:26 Download gff for BS05836.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262127..262829 17..719 100   Minus

BS05836.pep Sequence

Translation from 16 to 720

> BS05836.pep
MPFVRPLVTVVRAGRHSYSAGLQLQQRLARSNQILNPPAEFRNYLVLQEH
DPVYTVGLRTKDYTAQDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPI
LHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIWVGDNKICA
IGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFP
VEEASGALLNSFAKVFECRLQEHAKKPASSAEIG*

BS05836.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PB 234 CG9804-PB 1..234 1..234 1243 100 Plus
CG9804-PA 234 CG9804-PA 1..234 1..234 1243 100 Plus