Clone Sequence Records
BS05836.3prime Sequence
735 bp (734 high quality bases) assembled on 2005-12-03
> BS05836.3prime
ATGGTCTAGAAAGCTTTTATCCGATTTCAGCAGAACTTGCTGGTTTTTTG
GCGTGTTCCTGAAGGCGGCATTCGAAAACTTTAGCGAAACTATTGAGGAG
TGCGCCACTGGCCTCCTCGACAGGAAAATGTCTGTCCAGCTCTTTGCTGA
GCGAGGTGACCCCCTTGCCTTCGATTCCGCAGGGCACAATGTGCTCAAAC
CACTGCAGATCCGTGCAGCAATTGAGGCCGATTCCATGCGTGGTGACGTA
ACGCGAGCCGTGGATACCGATGGCACAGATCTTGTTGTCACCCACCCAGA
TACCGGTGTCCTTGGTCGCCTTGGCACTGGAAATGCCCATCTGGTGGCAG
GCCTCGACAACCATCCGCTCCAACGTCGCCACGTACCAGCGGATGCTCGG
CACGAACTGACCCAGGTGCAGAATGGGATAGGCCACCAACTGGCCGGGGC
CGTGAAATGTGATCAAGCCACCGCGATCTGTGCGATGGAAGTCTGCTCCT
AGCCGGCGGAGTCGGTCTTCATCCTGCGCCGTATAGTCCTTTGTCCTTAG
TCCGACTGTGTAGACCGGGTCGTGCTCCTGAAGCACCAGGTAGTTTCGGA
ACTCCGCTGGCGGATTCAGGATCTGGTTGGACCTTGCAAGACGTTGCTGT
AGCTGTAATCCTGCTGAATAGCTATGCCGCCCGGCCCGCACCACGGTCAC
CAGCGGTCGGACAAAAGGCATGTCGACTGATAACT
BS05836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PA | 705 | CG9804-RA | 1..705 | 721..17 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..762 | 721..17 | 3525 | 100 | Minus |
CG9804-RA | 1108 | CG9804-RA | 223..927 | 721..17 | 3525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436403..4437107 | 17..721 | 3525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:29:41 has no hits.
BS05836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:50 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:53 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:37 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 11..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:10 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 11..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:10 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436396..4437107 | 11..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:37 Download gff for
BS05836.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262118..262829 | 11..721 | 99 | | Plus |
BS05836.5prime Sequence
735 bp (688 high quality bases) assembled on 2005-12-03
> BS05836.5prime
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGATAAAAGCTTTCTAGACC
BS05836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PA | 705 | CG9804-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..762 | 17..721 | 3525 | 100 | Plus |
CG9804-RA | 1108 | CG9804-RA | 223..927 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436403..4437107 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:16:00 has no hits.
BS05836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:51 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:56:55 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:31 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:04 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 17..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:04 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436396..4437107 | 17..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:31 Download gff for
BS05836.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262118..262829 | 17..727 | 99 | | Minus |
BS05836.complete Sequence
737 bp (737 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635251
> BS05836.complete
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGATAAAAGCTTTCTAGACCAT
BS05836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 705 | CG9804-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
CG9804-RA | 705 | CG9804-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..762 | 17..721 | 3525 | 100 | Plus |
CG9804-RA | 1108 | CG9804-RA | 223..927 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436403..4437107 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:58:43 has no hits.
BS05836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:49 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:15 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:26 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..925 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:49 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..934 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:23 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..925 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:23 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436405..4437107 | 17..719 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:26 Download gff for
BS05836.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262127..262829 | 17..719 | 100 | | Minus |
BS05836.pep Sequence
Translation from 16 to 720
> BS05836.pep
MPFVRPLVTVVRAGRHSYSAGLQLQQRLARSNQILNPPAEFRNYLVLQEH
DPVYTVGLRTKDYTAQDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPI
LHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIWVGDNKICA
IGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFP
VEEASGALLNSFAKVFECRLQEHAKKPASSAEIG*
BS05836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PB | 234 | CG9804-PB | 1..234 | 1..234 | 1243 | 100 | Plus |
CG9804-PA | 234 | CG9804-PA | 1..234 | 1..234 | 1243 | 100 | Plus |