Clone Sequence Records
BS05838.3prime Sequence
831 bp (749 high quality bases) assembled on 2005-12-03
> BS05838.3prime
ATGGTCTAGAAAGCTTTTACTTTTTTGAGTCTGACTGAGGGGTCTGACTC
TTGCGCCGCTGCGAGGCTTGATAGGCACTATTATAGAAGTCGTAAAAGCC
GTAGAACATGCCAAGAATGACGGTGGTGAAGTAGAGAAGCACTAAGGGCG
GCATGCCGCACAATACCAGCTGGAAAGCAACCTGCGTGAGGATAAGAACG
AACTGCGTCATCTGAATCACTGTGATGCACTTCTTCACTGGAGTTAGGGC
CTGCACCAAGGTCTTATCCGCCACTGCCGCCACAAAGTAGTACGAGTACA
TGATAACGTGAACGATAGAATTCAAGAACACGCAGAAGTAAGCAGCAGAA
CCATTTTCGTTGAAGTTGATCAGTGCGTAGACCAGCGTTACCGTGGAGAA
GTGATGAAAGATGTGCAGCTTGGACACCTGGTTTTGTTTCTTGCGAAGCA
CAAAGATCACGGTTTCAATCAGCTCAGAGATCTTCAGCCAGAAGAGAAAG
TAGGCCAAGTTGTAGTACCGCCTCACGAGCTCTGGGCTGCTCCCGATGTC
GCGGCACTTCCAAAAGATGTATATGGTGTTGTCCGTAATGTACAGGACCT
CTTTGATAGCATATATGCAGGAAACCACCTGGATGAAATTATGTAGCAAG
ATAAGTCGCTTGAGCTCGTAAGGTTTGCGCCATTCCATGAAATGCGGACC
CGCTTTGGTGACGAAGTACAGATAGAGGACCAGCACTGTGATCATGTACC
AGGGATCCTTATAAATCGTANGAACGTTCACCACCGGCTGCAAATTTATA
CTTGCTGACGCCTCCATGTCGACTGATAACT
BS05838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 801 | CG30008-RA | 1..801 | 817..17 | 3986 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..903 | 821..17 | 3999 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891079 | 352..17 | 1680 | 100 | Minus |
2R | 25286936 | 2R | 9890438..9890688 | 600..350 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 9890052..9890160 | 801..693 | 534 | 99.1 | Minus |
2R | 25286936 | 2R | 9890287..9890382 | 692..597 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:21:20 has no hits.
BS05838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:55 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:00 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:00 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..906 | 12..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:34 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..906 | 12..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:34 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9890052..9890160 | 693..801 | 99 | -> | Minus |
2R | 9890287..9890380 | 599..692 | 100 | -> | Minus |
2R | 9890440..9890686 | 352..598 | 100 | -> | Minus |
2R | 9889974..9889995 | 802..824 | 91 | -> | Minus |
2R | 9890745..9891082 | 12..351 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:00 Download gff for
BS05838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777479..5777500 | 802..824 | 91 | -> | Minus |
arm_2R | 5777557..5777665 | 693..801 | 99 | -> | Minus |
arm_2R | 5777792..5777885 | 599..692 | 100 | -> | Minus |
arm_2R | 5777945..5778191 | 352..598 | 100 | -> | Minus |
arm_2R | 5778250..5778587 | 12..351 | 99 | | Minus |
BS05838.5prime Sequence
831 bp (810 high quality bases) assembled on 2005-12-03
> BS05838.5prime
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGTAAAAGCTTTCTAGACC
BS05838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 801 | CG30008-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..903 | 13..817 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891079 | 482..817 | 1680 | 100 | Plus |
2R | 25286936 | 2R | 9890438..9890688 | 234..484 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 9890052..9890160 | 33..141 | 545 | 100 | Plus |
2R | 25286936 | 2R | 9890287..9890382 | 142..237 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:41:01 has no hits.
BS05838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:57 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:01 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:35 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..906 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:46 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..906 | 10..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:46 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9890440..9890686 | 236..482 | 100 | -> | Plus |
2R | 9889974..9889995 | 10..32 | 91 | -> | Plus |
2R | 9890052..9890160 | 33..141 | 100 | -> | Plus |
2R | 9890287..9890380 | 142..235 | 100 | -> | Plus |
2R | 9890745..9891082 | 483..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:35 Download gff for
BS05838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777479..5777500 | 10..32 | 91 | -> | Plus |
arm_2R | 5777557..5777665 | 33..141 | 100 | -> | Plus |
arm_2R | 5777792..5777885 | 142..235 | 100 | -> | Plus |
arm_2R | 5777945..5778191 | 236..482 | 100 | -> | Plus |
arm_2R | 5778250..5778587 | 483..822 | 99 | | Plus |
BS05838.complete Sequence
833 bp (833 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635252
> BS05838.complete
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGTAAAAGCTTTCTAGACCAT
BS05838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 801 | CG30008-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..903 | 13..817 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891079 | 482..817 | 1680 | 100 | Plus |
2R | 25286936 | 2R | 9890438..9890688 | 234..484 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 9890052..9890160 | 33..141 | 545 | 100 | Plus |
2R | 25286936 | 2R | 9890287..9890382 | 142..237 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:22 has no hits.
BS05838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:50 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:17 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 77..886 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:07:31 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 103..893 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:51 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 77..886 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:42 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 103..893 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:42 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9889980..9889995 | 17..32 | 100 | -> | Plus |
2R | 9890052..9890160 | 33..141 | 100 | -> | Plus |
2R | 9890287..9890380 | 142..235 | 100 | -> | Plus |
2R | 9890440..9890686 | 236..482 | 100 | -> | Plus |
2R | 9890745..9891069 | 483..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:07:31 Download gff for
BS05838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777485..5777500 | 17..32 | 100 | -> | Plus |
arm_2R | 5777557..5777665 | 33..141 | 100 | -> | Plus |
arm_2R | 5777792..5777885 | 142..235 | 100 | -> | Plus |
arm_2R | 5777945..5778191 | 236..482 | 100 | -> | Plus |
arm_2R | 5778250..5778574 | 483..807 | 100 | | Plus |
BS05838.pep Sequence
Translation from 16 to 816
> BS05838.pep
MEASASINLQPVVNVPTIYKDPWYMITVLVLYLYFVTKAGPHFMEWRKPY
ELKRLILLHNFIQVVSCIYAIKEVLYITDNTIYIFWKCRDIGSSPELVRR
YYNLAYFLFWLKISELIETVIFVLRKKQNQVSKLHIFHHFSTVTLVYALI
NFNENGSAAYFCVFLNSIVHVIMYSYYFVAAVADKTLVQALTPVKKCITV
IQMTQFVLILTQVAFQLVLCGMPPLVLLYFTTVILGMFYGFYDFYNSAYQ
ASQRRKSQTPQSDSKK*
BS05838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 266 | CG30008-PA | 1..266 | 1..266 | 1386 | 100 | Plus |
bond-PC | 322 | CG6921-PC | 28..261 | 18..253 | 343 | 35.4 | Plus |
bond-PA | 322 | CG6921-PA | 28..261 | 18..253 | 343 | 35.4 | Plus |
bond-PB | 322 | CG6921-PB | 28..261 | 18..253 | 343 | 35.4 | Plus |
CG8534-PA | 265 | CG8534-PA | 16..261 | 13..257 | 336 | 34.7 | Plus |