Clone BS05838 Report

Search the DGRC for BS05838

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG30008-RA
Protein status:BS05838.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05838.3prime Sequence

831 bp (749 high quality bases) assembled on 2005-12-03

> BS05838.3prime
ATGGTCTAGAAAGCTTTTACTTTTTTGAGTCTGACTGAGGGGTCTGACTC
TTGCGCCGCTGCGAGGCTTGATAGGCACTATTATAGAAGTCGTAAAAGCC
GTAGAACATGCCAAGAATGACGGTGGTGAAGTAGAGAAGCACTAAGGGCG
GCATGCCGCACAATACCAGCTGGAAAGCAACCTGCGTGAGGATAAGAACG
AACTGCGTCATCTGAATCACTGTGATGCACTTCTTCACTGGAGTTAGGGC
CTGCACCAAGGTCTTATCCGCCACTGCCGCCACAAAGTAGTACGAGTACA
TGATAACGTGAACGATAGAATTCAAGAACACGCAGAAGTAAGCAGCAGAA
CCATTTTCGTTGAAGTTGATCAGTGCGTAGACCAGCGTTACCGTGGAGAA
GTGATGAAAGATGTGCAGCTTGGACACCTGGTTTTGTTTCTTGCGAAGCA
CAAAGATCACGGTTTCAATCAGCTCAGAGATCTTCAGCCAGAAGAGAAAG
TAGGCCAAGTTGTAGTACCGCCTCACGAGCTCTGGGCTGCTCCCGATGTC
GCGGCACTTCCAAAAGATGTATATGGTGTTGTCCGTAATGTACAGGACCT
CTTTGATAGCATATATGCAGGAAACCACCTGGATGAAATTATGTAGCAAG
ATAAGTCGCTTGAGCTCGTAAGGTTTGCGCCATTCCATGAAATGCGGACC
CGCTTTGGTGACGAAGTACAGATAGAGGACCAGCACTGTGATCATGTACC
AGGGATCCTTATAAATCGTANGAACGTTCACCACCGGCTGCAAATTTATA
CTTGCTGACGCCTCCATGTCGACTGATAACT

BS05838.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-PA 801 CG30008-RA 1..801 817..17 3986 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-RA 965 CG30008-RA 99..903 821..17 3999 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9890744..9891079 352..17 1680 100 Minus
2R 25286936 2R 9890438..9890688 600..350 1255 100 Minus
2R 25286936 2R 9890052..9890160 801..693 534 99.1 Minus
2R 25286936 2R 9890287..9890382 692..597 480 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:21:20 has no hits.

BS05838.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:55 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-PA 1..801 17..817 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:00 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-PA 1..801 17..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:00 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 97..906 12..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:34 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 97..906 12..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:34 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9890052..9890160 693..801 99 -> Minus
2R 9890287..9890380 599..692 100 -> Minus
2R 9890440..9890686 352..598 100 -> Minus
2R 9889974..9889995 802..824 91 -> Minus
2R 9890745..9891082 12..351 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:00 Download gff for BS05838.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5777479..5777500 802..824 91 -> Minus
arm_2R 5777557..5777665 693..801 99 -> Minus
arm_2R 5777792..5777885 599..692 100 -> Minus
arm_2R 5777945..5778191 352..598 100 -> Minus
arm_2R 5778250..5778587 12..351 99   Minus

BS05838.5prime Sequence

831 bp (810 high quality bases) assembled on 2005-12-03

> BS05838.5prime
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGTAAAAGCTTTCTAGACC

BS05838.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-PA 801 CG30008-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-RA 965 CG30008-RA 99..903 13..817 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9890744..9891079 482..817 1680 100 Plus
2R 25286936 2R 9890438..9890688 234..484 1255 100 Plus
2R 25286936 2R 9890052..9890160 33..141 545 100 Plus
2R 25286936 2R 9890287..9890382 142..237 480 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:41:01 has no hits.

BS05838.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:23:57 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:01 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:35 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 97..906 10..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:46 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 97..906 10..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:46 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9890440..9890686 236..482 100 -> Plus
2R 9889974..9889995 10..32 91 -> Plus
2R 9890052..9890160 33..141 100 -> Plus
2R 9890287..9890380 142..235 100 -> Plus
2R 9890745..9891082 483..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:35 Download gff for BS05838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5777479..5777500 10..32 91 -> Plus
arm_2R 5777557..5777665 33..141 100 -> Plus
arm_2R 5777792..5777885 142..235 100 -> Plus
arm_2R 5777945..5778191 236..482 100 -> Plus
arm_2R 5778250..5778587 483..822 99   Plus

BS05838.complete Sequence

833 bp (833 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635252

> BS05838.complete
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGTAAAAGCTTTCTAGACCAT

BS05838.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-RA 801 CG30008-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-RA 965 CG30008-RA 99..903 13..817 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9890744..9891079 482..817 1680 100 Plus
2R 25286936 2R 9890438..9890688 234..484 1255 100 Plus
2R 25286936 2R 9890052..9890160 33..141 545 100 Plus
2R 25286936 2R 9890287..9890382 142..237 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:22 has no hits.

BS05838.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:50 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:17 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 77..886 10..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:07:31 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 103..893 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:51 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 77..886 10..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:42 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
CG30008-RA 103..893 17..807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:42 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9889980..9889995 17..32 100 -> Plus
2R 9890052..9890160 33..141 100 -> Plus
2R 9890287..9890380 142..235 100 -> Plus
2R 9890440..9890686 236..482 100 -> Plus
2R 9890745..9891069 483..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:07:31 Download gff for BS05838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5777485..5777500 17..32 100 -> Plus
arm_2R 5777557..5777665 33..141 100 -> Plus
arm_2R 5777792..5777885 142..235 100 -> Plus
arm_2R 5777945..5778191 236..482 100 -> Plus
arm_2R 5778250..5778574 483..807 100   Plus

BS05838.pep Sequence

Translation from 16 to 816

> BS05838.pep
MEASASINLQPVVNVPTIYKDPWYMITVLVLYLYFVTKAGPHFMEWRKPY
ELKRLILLHNFIQVVSCIYAIKEVLYITDNTIYIFWKCRDIGSSPELVRR
YYNLAYFLFWLKISELIETVIFVLRKKQNQVSKLHIFHHFSTVTLVYALI
NFNENGSAAYFCVFLNSIVHVIMYSYYFVAAVADKTLVQALTPVKKCITV
IQMTQFVLILTQVAFQLVLCGMPPLVLLYFTTVILGMFYGFYDFYNSAYQ
ASQRRKSQTPQSDSKK*

BS05838.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30008-PA 266 CG30008-PA 1..266 1..266 1386 100 Plus
bond-PC 322 CG6921-PC 28..261 18..253 343 35.4 Plus
bond-PA 322 CG6921-PA 28..261 18..253 343 35.4 Plus
bond-PB 322 CG6921-PB 28..261 18..253 343 35.4 Plus
CG8534-PA 265 CG8534-PA 16..261 13..257 336 34.7 Plus