Clone Sequence Records
BS05840.5prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-03
> BS05840.5prime
GAAGTTATCAGTCGACATGACTAATTCATTGACCATCGCCGTCTTTTTGG
CCAGCCTGTGCCTCTTTGCCAGTTGTGGTCAAATGCAGGCAGCCTCCATT
GTCTGCGGATCGGAGGCTAAGTCTGCAGAGGATGGTGATTCGGTGACCAC
TCCCAGTACCAGTGAGGTCAACAAATTCGTCCACAGCCTGCAATGCACTC
TGGAGAAGGCCAAGCCCTGGATAGCCAATATCGAGAAGGAGGCCAAGATC
TTGGAGGAGAAGGCCAGGGATGCCACCATATCGCTCTTCCAGCGCATAAA
TAAACTGGTCAATGTGCTCGCCTCACCGGTTAAATTCGAAAAGGATAAGG
AAAAGGATAAGGATGAGCAGAAGGAACCGGAGGAGGTCACCACCACGACC
ACCCCTTCCACATCGGAGGCTTCGAGTTCCTCCAAAAACGATCTTAAGGA
GGAACTAACCACTTCTGCGCCGCCAGTTCACTTGGACTGGCTGGAGGATC
ATGCCAATGAGGTGGACTACATTCCAGAGAAGAATTAGAAGCTTTCTAGA
CC
BS05840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PA | 522 | CG9689-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..597 | 17..538 | 2610 | 100 | Plus |
| CG9689-RA | 1655 | CG9689-RA | 76..597 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882549 | 17..538 | 2610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:15:30 has no hits.
BS05840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:01 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:07 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:16 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..603 | 13..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:19 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..603 | 13..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:19 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882026..9882555 | 13..542 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:16 Download gff for
BS05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776059..9776588 | 13..542 | 99 | | Plus |
BS05840.3prime Sequence
552 bp (551 high quality bases) assembled on 2005-12-03
> BS05840.3prime
ATGGTCTAGAAAGCTTCTAATTCTTCTCTGGAATGTAGTCCACCTCATTG
GCATGATCCTCCAGCCAGTCCAAGTGAACTGGCGGCGCAGAAGTGGTTAG
TTCCTCCTTAAGATCGTTTTTGGAGGAACTCGAAGCCTCCGATGTGGAAG
GGGTGGTCGTGGTGGTGACCTCCTCCGGTTCCTTCTGCTCATCCTTATCC
TTTTCCTTATCCTTTTCGAATTTAACCGGTGAGGCGAGCACATTGACCAG
TTTATTTATGCGCTGGAAGAGCGATATGGTGGCATCCCTGGCCTTCTCCT
CCAAGATCTTGGCCTCCTTCTCGATATTGGCTATCCAGGGCTTGGCCTTC
TCCAGAGTGCATTGCAGGCTGTGGACGAATTTGTTGACCTCACTGGTACT
GGGAGTGGTCACCGAATCACCATCCTCTGCAGACTTAGCCTCCGATCCGC
AGACAATGGAGGCTGCCTGCATTTGACCACAACTGGCAAAGAGGCACAGG
CTGGCCAAAAAGACGGCGATGGTCAATGAATTAGTCATGTCGACTGATAA
CT
BS05840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PA | 522 | CG9689-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..597 | 538..17 | 2610 | 100 | Minus |
| CG9689-RA | 1655 | CG9689-RA | 76..597 | 538..17 | 2610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882549 | 538..17 | 2610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:53 has no hits.
BS05840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:00 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:05 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:43 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..603 | 13..542 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:28 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..603 | 13..542 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:28 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882026..9882555 | 13..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:43 Download gff for
BS05840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776059..9776588 | 13..542 | 99 | | Minus |
BS05840.complete Sequence
554 bp (554 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635253
> BS05840.complete
GAAGTTATCAGTCGACATGACTAATTCATTGACCATCGCCGTCTTTTTGG
CCAGCCTGTGCCTCTTTGCCAGTTGTGGTCAAATGCAGGCAGCCTCCATT
GTCTGCGGATCGGAGGCTAAGTCTGCAGAGGATGGTGATTCGGTGACCAC
TCCCAGTACCAGTGAGGTCAACAAATTCGTCCACAGCCTGCAATGCACTC
TGGAGAAGGCCAAGCCCTGGATAGCCAATATCGAGAAGGAGGCCAAGATC
TTGGAGGAGAAGGCCAGGGATGCCACCATATCGCTCTTCCAGCGCATAAA
TAAACTGGTCAATGTGCTCGCCTCACCGGTTAAATTCGAAAAGGATAAGG
AAAAGGATAAGGATGAGCAGAAGGAACCGGAGGAGGTCACCACCACGACC
ACCCCTTCCACATCGGAGGCTTCGAGTTCCTCCAAAAACGATCTTAAGGA
GGAACTAACCACTTCTGCGCCGCCAGTTCACTTGGACTGGCTGGAGGATC
ATGCCAATGAGGTGGACTACATTCCAGAGAAGAATTAGAAGCTTTCTAGA
CCAT
BS05840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 522 | CG9689-PB | 1..522 | 17..538 | 2610 | 100 | Plus |
| CG9689-RA | 522 | CG9689-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..597 | 17..538 | 2610 | 100 | Plus |
| CG9689-RA | 1655 | CG9689-RA | 76..597 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882549 | 17..538 | 2610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:04:23 has no hits.
BS05840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:52 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:18 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 44..573 | 13..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:40 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 76..597 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:52 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 44..573 | 13..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:14 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 76..597 | 17..538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:14 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882028..9882549 | 17..538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:40 Download gff for
BS05840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776061..9776582 | 17..538 | 100 | | Plus |
BS05840.pep Sequence
Translation from 16 to 537
> BS05840.pep
MTNSLTIAVFLASLCLFASCGQMQAASIVCGSEAKSAEDGDSVTTPSTSE
VNKFVHSLQCTLEKAKPWIANIEKEAKILEEKARDATISLFQRINKLVNV
LASPVKFEKDKEKDKDEQKEPEEVTTTTTPSTSEASSSSKNDLKEELTTS
APPVHLDWLEDHANEVDYIPEKN*
BS05840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PB | 173 | CG9689-PB | 1..173 | 1..173 | 878 | 100 | Plus |
| CG9689-PA | 173 | CG9689-PA | 1..173 | 1..173 | 878 | 100 | Plus |
