Clone Sequence Records
BS05842.3prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS05842.3prime
ATGGTCTAGAAAGCTTTCATTCGGCATAGGTGGCCTCGTTGGCCTCTTTG
GAGCTAACCTCCATGACCTCGCATCCCTGGGCGTAGTCTTCGATGCTGGT
GTTGTCCTTGTCCTTCAAAAGCTCCGCCACAGCCTGCGCCATCTGCTCGT
CCAGTTCCTTCTCAGCCTGGGCATCCAGGTCCGGCGCATCGCTGGATTTC
TGATCGGCAGCCTGGCGTCTTCGTCTAGACTCCCTTTGCTTACAAAAGCT
TACGGCCCGGTCATATGCAGATTGTAGATTGAAATTCTTAATATCGAATT
CTTTCAGTGACTGGCAAAAGGATCGCACCATCGTATCCTCCGTGCTTCTG
CGTTTCCTAGCAGTGTGCTCCGTAGTTGTTTCTTCTACCGCAGCTGGTGT
TGTCTTTTCCTCGGAGGAGGAATCGCCGGAGCTGTCCGCCTTGTTCTTGG
CCTTGTCTTTGGCTTTGTCATTATGCTCCTCAGATGAGCTGCTGGCATCC
TTGGCAGATCGTTTGATAATATGGATTCCGGTGCTCTCGTCCAGGTCCTG
CAGTTCACCGCTGTCTTCGCTCAGCGTCAGCATCTGCTCCAGCCAATCCT
CCTCGGATTTGGTTAGTCTTGAGGGCAGAGCCACTGCAGCACAGAAAAGG
ATGGCTGACACGGCCAGTAGTAACAGTGATCGCTGCATGTCGACTGATAA
CT
BS05842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PA | 672 | CG4716-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
CG4716-PB | 369 | CG4716-RB | 1..360 | 688..329 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..768 | 688..17 | 3360 | 100 | Minus |
CG4716-RA | 792 | CG4716-RA | 97..768 | 688..17 | 3360 | 100 | Minus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 688..329 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257354 | 688..17 | 3360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:02:01 has no hits.
BS05842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:01 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:08 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:03 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..775 | 10..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:42 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 94..771 | 10..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:42 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256680..13257357 | 10..693 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:03 Download gff for
BS05842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144185..9144862 | 10..693 | 99 | | Minus |
BS05842.5prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-03
> BS05842.5prime
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAATGAAAGCTTTCTAGA
CC
BS05842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PA | 672 | CG4716-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG4716-PB | 369 | CG4716-RB | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..768 | 17..688 | 3360 | 100 | Plus |
CG4716-RA | 792 | CG4716-RA | 97..768 | 17..688 | 3360 | 100 | Plus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257354 | 17..688 | 3360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:52:37 has no hits.
BS05842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:03 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:09 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:09 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..775 | 12..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:17 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 94..771 | 12..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:17 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256680..13257357 | 12..695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:09 Download gff for
BS05842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144185..9144862 | 12..695 | 99 | | Plus |
BS05842.complete Sequence
704 bp (704 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635254
> BS05842.complete
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAATGAAAGCTTTCTAGA
CCAT
BS05842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 672 | CG4716-PC | 1..672 | 17..688 | 3360 | 100 | Plus |
CG4716-RA | 672 | CG4716-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG4716-RB | 369 | CG4716-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..768 | 17..688 | 3360 | 100 | Plus |
CG4716-RA | 792 | CG4716-RA | 97..768 | 17..688 | 3360 | 100 | Plus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257354 | 17..688 | 3360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:10:02 has no hits.
BS05842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:53 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:20 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..775 | 12..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:52 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 101..771 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:53 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..775 | 12..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:42 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 97..767 | 17..687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:42 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256683..13257353 | 17..687 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:52 Download gff for
BS05842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144188..9144858 | 17..687 | 100 | | Plus |
BS05842.pep Sequence
Translation from 16 to 687
> BS05842.pep
MQRSLLLLAVSAILFCAAVALPSRLTKSEEDWLEQMLTLSEDSGELQDLD
ESTGIHIIKRSAKDASSSSEEHNDKAKDKAKNKADSSGDSSSEEKTTPAA
VEETTTEHTARKRRSTEDTMVRSFCQSLKEFDIKNFNLQSAYDRAVSFCK
QRESRRRRQAADQKSSDAPDLDAQAEKELDEQMAQAVAELLKDKDNTSIE
DYAQGCEVMEVSSKEANEATYAE*
BS05842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PC | 223 | CG4716-PC | 1..223 | 1..223 | 1106 | 100 | Plus |
CG4716-PA | 223 | CG4716-PA | 1..223 | 1..223 | 1106 | 100 | Plus |
CG4716-PB | 122 | CG4716-PB | 1..121 | 1..121 | 590 | 99.2 | Plus |