Clone BS05842 Report

Search the DGRC for BS05842

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4716-RA
Protein status:BS05842.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05842.3prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS05842.3prime
ATGGTCTAGAAAGCTTTCATTCGGCATAGGTGGCCTCGTTGGCCTCTTTG
GAGCTAACCTCCATGACCTCGCATCCCTGGGCGTAGTCTTCGATGCTGGT
GTTGTCCTTGTCCTTCAAAAGCTCCGCCACAGCCTGCGCCATCTGCTCGT
CCAGTTCCTTCTCAGCCTGGGCATCCAGGTCCGGCGCATCGCTGGATTTC
TGATCGGCAGCCTGGCGTCTTCGTCTAGACTCCCTTTGCTTACAAAAGCT
TACGGCCCGGTCATATGCAGATTGTAGATTGAAATTCTTAATATCGAATT
CTTTCAGTGACTGGCAAAAGGATCGCACCATCGTATCCTCCGTGCTTCTG
CGTTTCCTAGCAGTGTGCTCCGTAGTTGTTTCTTCTACCGCAGCTGGTGT
TGTCTTTTCCTCGGAGGAGGAATCGCCGGAGCTGTCCGCCTTGTTCTTGG
CCTTGTCTTTGGCTTTGTCATTATGCTCCTCAGATGAGCTGCTGGCATCC
TTGGCAGATCGTTTGATAATATGGATTCCGGTGCTCTCGTCCAGGTCCTG
CAGTTCACCGCTGTCTTCGCTCAGCGTCAGCATCTGCTCCAGCCAATCCT
CCTCGGATTTGGTTAGTCTTGAGGGCAGAGCCACTGCAGCACAGAAAAGG
ATGGCTGACACGGCCAGTAGTAACAGTGATCGCTGCATGTCGACTGATAA
CT

BS05842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PA 672 CG4716-RA 1..672 688..17 3360 100 Minus
CG4716-PB 369 CG4716-RB 1..360 688..329 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..768 688..17 3360 100 Minus
CG4716-RA 792 CG4716-RA 97..768 688..17 3360 100 Minus
CG4716-RB 633 CG4716-RB 97..456 688..329 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257354 688..17 3360 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:02:01 has no hits.

BS05842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:01 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:08 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:03 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..775 10..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:42 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 94..771 10..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:42 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13256680..13257357 10..693 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:03 Download gff for BS05842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144185..9144862 10..693 99   Minus

BS05842.5prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-03

> BS05842.5prime
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAATGAAAGCTTTCTAGA
CC

BS05842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PA 672 CG4716-RA 1..672 17..688 3360 100 Plus
CG4716-PB 369 CG4716-RB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..768 17..688 3360 100 Plus
CG4716-RA 792 CG4716-RA 97..768 17..688 3360 100 Plus
CG4716-RB 633 CG4716-RB 97..456 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257354 17..688 3360 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:52:37 has no hits.

BS05842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:03 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:09 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:02:09 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..775 12..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:17 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 94..771 12..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:17 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13256680..13257357 12..695 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:09 Download gff for BS05842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144185..9144862 12..695 99   Plus

BS05842.complete Sequence

704 bp (704 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635254

> BS05842.complete
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAATGAAAGCTTTCTAGA
CCAT

BS05842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 672 CG4716-PC 1..672 17..688 3360 100 Plus
CG4716-RA 672 CG4716-PA 1..672 17..688 3360 100 Plus
CG4716-RB 369 CG4716-PB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..768 17..688 3360 100 Plus
CG4716-RA 792 CG4716-RA 97..768 17..688 3360 100 Plus
CG4716-RB 633 CG4716-RB 97..456 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257354 17..688 3360 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:10:02 has no hits.

BS05842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:53 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:20 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..775 12..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:52 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 101..771 17..687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:53 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..775 12..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:42 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 97..767 17..687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:42 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13256683..13257353 17..687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:52 Download gff for BS05842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144188..9144858 17..687 100   Plus

BS05842.pep Sequence

Translation from 16 to 687

> BS05842.pep
MQRSLLLLAVSAILFCAAVALPSRLTKSEEDWLEQMLTLSEDSGELQDLD
ESTGIHIIKRSAKDASSSSEEHNDKAKDKAKNKADSSGDSSSEEKTTPAA
VEETTTEHTARKRRSTEDTMVRSFCQSLKEFDIKNFNLQSAYDRAVSFCK
QRESRRRRQAADQKSSDAPDLDAQAEKELDEQMAQAVAELLKDKDNTSIE
DYAQGCEVMEVSSKEANEATYAE*

BS05842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PC 223 CG4716-PC 1..223 1..223 1106 100 Plus
CG4716-PA 223 CG4716-PA 1..223 1..223 1106 100 Plus
CG4716-PB 122 CG4716-PB 1..121 1..121 590 99.2 Plus