Clone BS05843 Report

Search the DGRC for BS05843

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG4377-RA
Protein status:BS05843.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05843.3prime Sequence

726 bp (725 high quality bases) assembled on 2005-12-03

> BS05843.3prime
ATGGTCTAGAAAGCTTTTAATTCAGCAATTTAAGCGAGAGCAGGGCAAAG
AAAGCCAACCCGTAGCTCAAGAGTTTTTTACTTTGCTCAGCTGAGGACTT
GGGTCCCAATTCCAAATCGTAGTTGTTGCAGGCCACGGAGTCGCTGGAGT
TTTCCGGCAGGCAGAGCGAGCATTTCGAGTCCTCCAAGCAGGCCTTCTGC
TCCTTAACAGAAAGAGCACATCCTCTCTGGAGGCTGTCCTTCTGATCGCC
GACTACCTTGACATAACAGTAGGAATTGGCGGAGGTGGGGAGGGCACATT
GGGTGGCGGCCAAGGAGGCGGTGGCACCCTTGTTGCAATCAGCTGAATCA
GAACCAATGCATTGAATGCATTTGAAATCCCTGCGTCCTACATTATTGCA
CAGCTGTCCACTGCACTTTTGACATTGATCGTCCTTGGCCGCACATTTCG
CTTGACCAGCCAAAGAGATTTGAGAAAAGCAACCGCGCTCACTAACAGCA
AAATCCTCATAAATGGTGACGCAAACGTCCAGTCTATCAGAACAGCTAAC
GGTGGCGTTTTGACGAGTGGTTCTCGAACAATTTATGCCTTCACAGCTGT
AACATTTTGGCGATTCAGCTGAATTGCGCACCTCCCTAGAAATTTCTCCT
GAGATTTCCCGTGAAGCCAGGAATAAAGCCAGTAGTATAACAAATTTGCC
CGATTGCAACATGTCGACTGATAACT

BS05843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 696 CG4377-RA 1..696 712..17 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..741 712..16 3485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835495..21835825 16..346 1655 100 Plus
2R 25286936 2R 21836103..21836313 502..712 1055 100 Plus
2R 25286936 2R 21835890..21836044 347..501 775 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:00:01 has no hits.

BS05843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:03 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:11 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:18:17 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..746 7..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:08 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..746 7..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:08 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21835490..21835825 7..346 98 <- Plus
2R 21835890..21836044 347..501 100 <- Plus
2R 21836103..21836313 502..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:18:17 Download gff for BS05843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17722995..17723330 7..346 98 <- Plus
arm_2R 17723395..17723549 347..501 100 <- Plus
arm_2R 17723608..17723818 502..712 100   Plus

BS05843.5prime Sequence

726 bp (725 high quality bases) assembled on 2005-12-03

> BS05843.5prime
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATTAAAAGCTTTCTAGACC

BS05843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 696 CG4377-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..741 17..713 3485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835495..21835825 713..383 1655 100 Minus
2R 25286936 2R 21836103..21836313 227..17 1055 100 Minus
2R 25286936 2R 21835890..21836044 382..228 775 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:22:12 has no hits.

BS05843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:04 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:12 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:14 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..746 17..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:19 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..746 17..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:19 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21835490..21835825 383..722 98 <- Minus
2R 21835890..21836044 228..382 100 <- Minus
2R 21836103..21836313 17..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:14 Download gff for BS05843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17723608..17723818 17..227 100   Minus
arm_2R 17722995..17723330 383..722 98 <- Minus
arm_2R 17723395..17723549 228..382 100 <- Minus

BS05843.complete Sequence

728 bp (728 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635255

> BS05843.complete
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATTAAAAGCTTTCTAGACCAT

BS05843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 696 CG4377-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..741 17..713 3485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835495..21835825 713..383 1655 100 Minus
2R 25286936 2R 21836103..21836313 227..17 1055 100 Minus
2R 25286936 2R 21835890..21836044 382..228 775 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:47:25 has no hits.

BS05843.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:54 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:22 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 18..719 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:06 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 50..738 22..710 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:54 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 18..719 17..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:54 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 50..738 22..710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:54 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21835498..21835825 383..710 100 <- Minus
2R 21835890..21836044 228..382 100 <- Minus
2R 21836103..21836308 22..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:06 Download gff for BS05843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17723003..17723330 383..710 100 <- Minus
arm_2R 17723395..17723549 228..382 100 <- Minus
arm_2R 17723608..17723813 22..227 100   Minus

BS05843.pep Sequence

Translation from 16 to 711

> BS05843.pep
MLQSGKFVILLALFLASREISGEISREVRNSAESPKCYSCEGINCSRTTR
QNATVSCSDRLDVCVTIYEDFAVSERGCFSQISLAGQAKCAAKDDQCQKC
SGQLCNNVGRRDFKCIQCIGSDSADCNKGATASLAATQCALPTSANSYCY
VKVVGDQKDSLQRGCALSVKEQKACLEDSKCSLCLPENSSDSVACNNYDL
ELGPKSSAEQSKKLLSYGLAFFALLSLKLLN*

BS05843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 231 CG4377-PA 1..231 1..231 1201 100 Plus
CG4363-PA 199 CG4363-PA 30..183 37..196 322 41.2 Plus
CG34040-PA 281 CG34040-PA 23..174 34..186 286 36.3 Plus