Clone Sequence Records
BS05843.3prime Sequence
726 bp (725 high quality bases) assembled on 2005-12-03
> BS05843.3prime
ATGGTCTAGAAAGCTTTTAATTCAGCAATTTAAGCGAGAGCAGGGCAAAG
AAAGCCAACCCGTAGCTCAAGAGTTTTTTACTTTGCTCAGCTGAGGACTT
GGGTCCCAATTCCAAATCGTAGTTGTTGCAGGCCACGGAGTCGCTGGAGT
TTTCCGGCAGGCAGAGCGAGCATTTCGAGTCCTCCAAGCAGGCCTTCTGC
TCCTTAACAGAAAGAGCACATCCTCTCTGGAGGCTGTCCTTCTGATCGCC
GACTACCTTGACATAACAGTAGGAATTGGCGGAGGTGGGGAGGGCACATT
GGGTGGCGGCCAAGGAGGCGGTGGCACCCTTGTTGCAATCAGCTGAATCA
GAACCAATGCATTGAATGCATTTGAAATCCCTGCGTCCTACATTATTGCA
CAGCTGTCCACTGCACTTTTGACATTGATCGTCCTTGGCCGCACATTTCG
CTTGACCAGCCAAAGAGATTTGAGAAAAGCAACCGCGCTCACTAACAGCA
AAATCCTCATAAATGGTGACGCAAACGTCCAGTCTATCAGAACAGCTAAC
GGTGGCGTTTTGACGAGTGGTTCTCGAACAATTTATGCCTTCACAGCTGT
AACATTTTGGCGATTCAGCTGAATTGCGCACCTCCCTAGAAATTTCTCCT
GAGATTTCCCGTGAAGCCAGGAATAAAGCCAGTAGTATAACAAATTTGCC
CGATTGCAACATGTCGACTGATAACT
BS05843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 696 | CG4377-RA | 1..696 | 712..17 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..741 | 712..16 | 3485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835495..21835825 | 16..346 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 21836103..21836313 | 502..712 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21835890..21836044 | 347..501 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:00:01 has no hits.
BS05843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:03 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:11 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:18:17 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..746 | 7..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:08 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..746 | 7..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:08 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835490..21835825 | 7..346 | 98 | <- | Plus |
2R | 21835890..21836044 | 347..501 | 100 | <- | Plus |
2R | 21836103..21836313 | 502..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:18:17 Download gff for
BS05843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17722995..17723330 | 7..346 | 98 | <- | Plus |
arm_2R | 17723395..17723549 | 347..501 | 100 | <- | Plus |
arm_2R | 17723608..17723818 | 502..712 | 100 | | Plus |
BS05843.5prime Sequence
726 bp (725 high quality bases) assembled on 2005-12-03
> BS05843.5prime
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATTAAAAGCTTTCTAGACC
BS05843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 696 | CG4377-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..741 | 17..713 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835495..21835825 | 713..383 | 1655 | 100 | Minus |
2R | 25286936 | 2R | 21836103..21836313 | 227..17 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21835890..21836044 | 382..228 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:12 has no hits.
BS05843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:04 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:12 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:14 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..746 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:19 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..746 | 17..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:19 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835490..21835825 | 383..722 | 98 | <- | Minus |
2R | 21835890..21836044 | 228..382 | 100 | <- | Minus |
2R | 21836103..21836313 | 17..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:14 Download gff for
BS05843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17723608..17723818 | 17..227 | 100 | | Minus |
arm_2R | 17722995..17723330 | 383..722 | 98 | <- | Minus |
arm_2R | 17723395..17723549 | 228..382 | 100 | <- | Minus |
BS05843.complete Sequence
728 bp (728 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635255
> BS05843.complete
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATTAAAAGCTTTCTAGACCAT
BS05843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 696 | CG4377-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..741 | 17..713 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835495..21835825 | 713..383 | 1655 | 100 | Minus |
2R | 25286936 | 2R | 21836103..21836313 | 227..17 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21835890..21836044 | 382..228 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:25 has no hits.
BS05843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:54 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:22 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 18..719 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:06 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 50..738 | 22..710 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:54 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 18..719 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:54 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 50..738 | 22..710 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:54 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835498..21835825 | 383..710 | 100 | <- | Minus |
2R | 21835890..21836044 | 228..382 | 100 | <- | Minus |
2R | 21836103..21836308 | 22..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:06 Download gff for
BS05843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17723003..17723330 | 383..710 | 100 | <- | Minus |
arm_2R | 17723395..17723549 | 228..382 | 100 | <- | Minus |
arm_2R | 17723608..17723813 | 22..227 | 100 | | Minus |
BS05843.pep Sequence
Translation from 16 to 711
> BS05843.pep
MLQSGKFVILLALFLASREISGEISREVRNSAESPKCYSCEGINCSRTTR
QNATVSCSDRLDVCVTIYEDFAVSERGCFSQISLAGQAKCAAKDDQCQKC
SGQLCNNVGRRDFKCIQCIGSDSADCNKGATASLAATQCALPTSANSYCY
VKVVGDQKDSLQRGCALSVKEQKACLEDSKCSLCLPENSSDSVACNNYDL
ELGPKSSAEQSKKLLSYGLAFFALLSLKLLN*
BS05843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 231 | CG4377-PA | 1..231 | 1..231 | 1201 | 100 | Plus |
CG4363-PA | 199 | CG4363-PA | 30..183 | 37..196 | 322 | 41.2 | Plus |
CG34040-PA | 281 | CG34040-PA | 23..174 | 34..186 | 286 | 36.3 | Plus |