Clone Sequence Records
BS05844.3prime Sequence
922 bp (799 high quality bases) assembled on 2005-12-03
> BS05844.3prime
ATGGTCTAGAAAGCTTTTACAGATTCGGCTCAAACTGAAAATTCGGATTT
AGAAACTTGAACTTGGCTGCCTCCAACAACATGCGGTTGTGCTCGATGCG
GTTGCGGCAGTGCAACTCCTGACTTATTTGGGCCATCGAGCGCTCCAGGC
GCTGCAGCACATCTCGCTGAGGATGCTCCAAGAAGTGGGCCATGGATAGC
GATTGTGAGAGGGCCTGGGAGCGTGAGTACTCCATGGAGACGTCCTCCAT
CGATGAAGCCAGCGATCCACTGGATTTACTCTCGCCCTGCACTGGTGGAA
CCTGGCTCAAATCTATGGCAGCCGGCTGATCAGCCAGGAATGACGGACCA
CTACCCTGCTCAGGCTTGACAGGACGACCCAGAAAGGAGACACTGGCAGG
AGTCGAACCGCCGGGCAGTGTTTCCACCGAGATGTTTGAGACGTTCTGAA
CGACAATTCCCAAGTTCTTAGGGATATTTGGTAGATTAGCTTTATCTGAA
GTGGAATCTTCGAGCTTGCGGGTAGCTCCCTCCTGCTCTTGCTTGTGGCG
CTGAAAAACCGTTTTGATTTTCAGCTCGTGGCTTTCGTTTCCAGACGGAA
CAGCAGCTTGCATGTCCACGAACACCCCGGAATCGCTCTGCGCAGCTGTA
CTTGTGGCTGCAACCGCAACTGGTGCCTTCTTGCGCGACTTGGCAAAGCG
TCGGTTTTTCATGATCCGATCACGGCGTTCTTCCAGTGCAGCCACCTTCA
TTTCATGGAGTTTGCCCACAAGGAACTATGACGTCTCTTGATGTGCATGT
GAAAGTTCCCGGTGGAGCGGACACTGCCGCGATAAATCCGATCCGGCGGA
CAGTAGCAGCACTTGACCGTAACATTGTCGCCCACCTGCTTCTCGATGCA
ATACAGTTCCCCGTTCAAGATG
BS05844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8592-PA | 966 | stil-RA | 215..966 | 768..17 | 3760 | 100 | Minus |
CG8592-PA | 966 | stil-RA | 65..214 | 917..768 | 725 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 142..1048 | 922..17 | 4480 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571760 | 442..17 | 2130 | 100 | Minus |
2R | 25286936 | 2R | 12570718..12570992 | 788..515 | 1325 | 99.6 | Minus |
2R | 25286936 | 2R | 12570508..12570643 | 922..787 | 650 | 98.5 | Minus |
2R | 25286936 | 2R | 12571143..12571218 | 516..441 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:32:09 has no hits.
BS05844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:06 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-PA | 60..966 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:14 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8592-PA | 60..966 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:54 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 142..1051 | 14..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:40 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 142..1051 | 14..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:40 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570720..12570992 | 515..786 | 99 | -> | Minus |
2R | 12571145..12571216 | 443..514 | 100 | -> | Minus |
2R | 12570508..12570643 | 787..922 | 98 | -> | Minus |
2R | 12571335..12571763 | 14..442 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:54 Download gff for
BS05844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8458013..8458148 | 787..922 | 98 | -> | Minus |
arm_2R | 8458225..8458497 | 515..786 | 99 | -> | Minus |
arm_2R | 8458650..8458721 | 443..514 | 100 | -> | Minus |
arm_2R | 8458840..8459268 | 14..442 | 99 | | Minus |
BS05844.5prime Sequence
907 bp (805 high quality bases) assembled on 2005-12-03
> BS05844.5prime
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAG
BS05844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8592-PA | 966 | stil-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 83..973 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571685 | 557..907 | 1755 | 100 | Plus |
2R | 25286936 | 2R | 12570718..12570992 | 210..484 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 12570449..12570643 | 17..211 | 975 | 100 | Plus |
2R | 25286936 | 2R | 12571143..12571218 | 483..558 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:46:51 has no hits.
BS05844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:07 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:15 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8592-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:35 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..973 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:52:11 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..973 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:52:11 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570449..12570643 | 17..211 | 100 | -> | Plus |
2R | 12570720..12570992 | 212..484 | 100 | -> | Plus |
2R | 12571145..12571216 | 485..556 | 100 | -> | Plus |
2R | 12571335..12571685 | 557..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:35 Download gff for
BS05844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8457954..8458148 | 17..211 | 100 | -> | Plus |
arm_2R | 8458225..8458497 | 212..484 | 100 | -> | Plus |
arm_2R | 8458650..8458721 | 485..556 | 100 | -> | Plus |
arm_2R | 8458840..8459190 | 557..907 | 100 | | Plus |
BS05844.complete Sequence
998 bp (998 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635256
> BS05844.complete
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAGCACAACCGCATGTTGTTGGAGGCAGCCAAGTTCAAGTTTCTAA
ATCCGAATTTTCAGTTTGAGCCGAATCTGTAAAAGCTTTCTAGACCAT
BS05844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 966 | CG8592-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 83..1048 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571760 | 557..982 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 12570718..12570992 | 210..484 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 12570449..12570643 | 17..211 | 975 | 100 | Plus |
2R | 25286936 | 2R | 12571143..12571218 | 483..558 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:28 has no hits.
BS05844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:34 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:57 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 94..1062 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:59 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..1046 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:34 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 94..1062 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:25 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..1046 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:25 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570449..12570643 | 17..211 | 100 | -> | Plus |
2R | 12570720..12570992 | 212..484 | 100 | -> | Plus |
2R | 12571145..12571216 | 485..556 | 100 | -> | Plus |
2R | 12571335..12571758 | 557..980 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:59 Download gff for
BS05844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8457954..8458148 | 17..211 | 100 | -> | Plus |
arm_2R | 8458225..8458497 | 212..484 | 100 | -> | Plus |
arm_2R | 8458650..8458721 | 485..556 | 100 | -> | Plus |
arm_2R | 8458840..8459263 | 557..980 | 100 | | Plus |
BS05844.pep Sequence
Translation from 16 to 981
> BS05844.pep
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNL*
BS05844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-PA | 321 | CG8592-PA | 1..321 | 1..321 | 1635 | 100 | Plus |