Clone BS05844 Report

Search the DGRC for BS05844

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptstil-RA
Protein status:BS05844.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05844.3prime Sequence

922 bp (799 high quality bases) assembled on 2005-12-03

> BS05844.3prime
ATGGTCTAGAAAGCTTTTACAGATTCGGCTCAAACTGAAAATTCGGATTT
AGAAACTTGAACTTGGCTGCCTCCAACAACATGCGGTTGTGCTCGATGCG
GTTGCGGCAGTGCAACTCCTGACTTATTTGGGCCATCGAGCGCTCCAGGC
GCTGCAGCACATCTCGCTGAGGATGCTCCAAGAAGTGGGCCATGGATAGC
GATTGTGAGAGGGCCTGGGAGCGTGAGTACTCCATGGAGACGTCCTCCAT
CGATGAAGCCAGCGATCCACTGGATTTACTCTCGCCCTGCACTGGTGGAA
CCTGGCTCAAATCTATGGCAGCCGGCTGATCAGCCAGGAATGACGGACCA
CTACCCTGCTCAGGCTTGACAGGACGACCCAGAAAGGAGACACTGGCAGG
AGTCGAACCGCCGGGCAGTGTTTCCACCGAGATGTTTGAGACGTTCTGAA
CGACAATTCCCAAGTTCTTAGGGATATTTGGTAGATTAGCTTTATCTGAA
GTGGAATCTTCGAGCTTGCGGGTAGCTCCCTCCTGCTCTTGCTTGTGGCG
CTGAAAAACCGTTTTGATTTTCAGCTCGTGGCTTTCGTTTCCAGACGGAA
CAGCAGCTTGCATGTCCACGAACACCCCGGAATCGCTCTGCGCAGCTGTA
CTTGTGGCTGCAACCGCAACTGGTGCCTTCTTGCGCGACTTGGCAAAGCG
TCGGTTTTTCATGATCCGATCACGGCGTTCTTCCAGTGCAGCCACCTTCA
TTTCATGGAGTTTGCCCACAAGGAACTATGACGTCTCTTGATGTGCATGT
GAAAGTTCCCGGTGGAGCGGACACTGCCGCGATAAATCCGATCCGGCGGA
CAGTAGCAGCACTTGACCGTAACATTGTCGCCCACCTGCTTCTCGATGCA
ATACAGTTCCCCGTTCAAGATG

BS05844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8592-PA 966 stil-RA 215..966 768..17 3760 100 Minus
CG8592-PA 966 stil-RA 65..214 917..768 725 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 142..1048 922..17 4480 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571760 442..17 2130 100 Minus
2R 25286936 2R 12570718..12570992 788..515 1325 99.6 Minus
2R 25286936 2R 12570508..12570643 922..787 650 98.5 Minus
2R 25286936 2R 12571143..12571218 516..441 380 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:32:09 has no hits.

BS05844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:06 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-PA 60..966 17..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:14 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8592-PA 60..966 17..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:38:54 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 142..1051 14..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:40 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 142..1051 14..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:40 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12570720..12570992 515..786 99 -> Minus
2R 12571145..12571216 443..514 100 -> Minus
2R 12570508..12570643 787..922 98 -> Minus
2R 12571335..12571763 14..442 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:38:54 Download gff for BS05844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8458013..8458148 787..922 98 -> Minus
arm_2R 8458225..8458497 515..786 99 -> Minus
arm_2R 8458650..8458721 443..514 100 -> Minus
arm_2R 8458840..8459268 14..442 99   Minus

BS05844.5prime Sequence

907 bp (805 high quality bases) assembled on 2005-12-03

> BS05844.5prime
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAG

BS05844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8592-PA 966 stil-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 83..973 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571685 557..907 1755 100 Plus
2R 25286936 2R 12570718..12570992 210..484 1375 100 Plus
2R 25286936 2R 12570449..12570643 17..211 975 100 Plus
2R 25286936 2R 12571143..12571218 483..558 380 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:46:51 has no hits.

BS05844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:07 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:15 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8592-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:35 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..973 17..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:52:11 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..973 17..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:52:11 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12570449..12570643 17..211 100 -> Plus
2R 12570720..12570992 212..484 100 -> Plus
2R 12571145..12571216 485..556 100 -> Plus
2R 12571335..12571685 557..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:35 Download gff for BS05844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8457954..8458148 17..211 100 -> Plus
arm_2R 8458225..8458497 212..484 100 -> Plus
arm_2R 8458650..8458721 485..556 100 -> Plus
arm_2R 8458840..8459190 557..907 100   Plus

BS05844.complete Sequence

998 bp (998 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635256

> BS05844.complete
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAGCACAACCGCATGTTGTTGGAGGCAGCCAAGTTCAAGTTTCTAA
ATCCGAATTTTCAGTTTGAGCCGAATCTGTAAAAGCTTTCTAGACCAT

BS05844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 966 CG8592-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 83..1048 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571760 557..982 2130 100 Plus
2R 25286936 2R 12570718..12570992 210..484 1375 100 Plus
2R 25286936 2R 12570449..12570643 17..211 975 100 Plus
2R 25286936 2R 12571143..12571218 483..558 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:41:28 has no hits.

BS05844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:34 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:57 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 94..1062 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:59 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..1046 17..980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:34 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 94..1062 17..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:25 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..1046 17..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:25 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12570449..12570643 17..211 100 -> Plus
2R 12570720..12570992 212..484 100 -> Plus
2R 12571145..12571216 485..556 100 -> Plus
2R 12571335..12571758 557..980 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:59 Download gff for BS05844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8457954..8458148 17..211 100 -> Plus
arm_2R 8458225..8458497 212..484 100 -> Plus
arm_2R 8458650..8458721 485..556 100 -> Plus
arm_2R 8458840..8459263 557..980 100   Plus

BS05844.pep Sequence

Translation from 16 to 981

> BS05844.pep
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNL*

BS05844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
stil-PA 321 CG8592-PA 1..321 1..321 1635 100 Plus