Clone Sequence Records
BS05846.3prime Sequence
870 bp (863 high quality bases) assembled on 2005-12-03
> BS05846.3prime
ATGGTCTAGAAAGCTTCTAATCACTCTCGTCCAGCTCGGCCGTCATGGCC
GCCACCTCGGCATCGTTGTCGTCCTCCGCTCCGCTATCCACGAATGAGGC
ATTGCCGCTCTGCTGCAACTCCTCGTGCTCCAGGTACTCCTGCAGCCGAT
CCTGGAAGAAGTTGATGAATGTCTGCTTCTGCTGCGCCGTGGCCGGGAAG
TAGTGTCCGCCGCTGTGCTCCAGCACCTCGGCGTTCTTGAAGCGCGCAGC
CAGGGACTCGCTCATCTCCTTGGGAATGATCTCATCCGTCTGTCCGTAGA
TGTGCAACGTGGGTATGCTGATGGCCTCTTCGTAGGCGCTCATGTGCACC
AGACTGCCAGACAAGAAGCCCGAGGCTAGCACAGCAAACTCCGGACGGAT
GGAGGTCAACTTCTTTTTGGCCAGGCCGCATATAAGACCCACGAAACAGG
CGCCCTGTGAGAAGCCTAGCAGTCCCTGGAAAGGGCCCTGCGTCCGCCAC
GCCTCCTCAACGCAGCGCAGGCTCTCCTGAAAGCCGAAGGCGGGACCACC
TTTGTTTGTTCCCTTGAAGGAGCCATCGTCCTTGTTGGCCCACCAACTCC
TCTGCTCCGGCACAGGCTCCGCCGCCGACTCCAGTGCCTTGGCCACGTGC
GGCGCCGTGATGAACACGAACTCTGCGTACTTGTTGGCGAACTTGCGGAA
GGAGCCCAGCTTGTTTTTGAAGGCTTCTCCATTCTGGCGGTAACCGTGCA
GGCACAGGACTCGCACCTTCTCGGTGATTTCCAGCTTCAGCTGCTGTTTG
CTGCTGCTGGCCCGACTGGAGCCGGGCTGCTCCACGGCCGCATCGTTGTT
GGTCATGTCGACTGATAACT
BS05846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 840 | CG5412-RA | 32..840 | 825..17 | 4045 | 100 | Minus |
CG5412-PA | 840 | CG5412-RA | 1..27 | 856..830 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..926 | 856..17 | 4155 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 856..409 | 2180 | 99.1 | Minus |
3R | 32079331 | 3R | 20577646..20578037 | 408..17 | 1960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:18:08 has no hits.
BS05846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:08 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:17 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:25 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:11 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:11 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577139..20577586 | 409..856 | 99 | -> | Minus |
3R | 20577646..20578037 | 17..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:25 Download gff for
BS05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 409..856 | 99 | -> | Minus |
arm_3R | 16403368..16403759 | 17..408 | 100 | | Minus |
BS05846.5prime Sequence
874 bp (842 high quality bases) assembled on 2005-12-03
> BS05846.5prime
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATTAGAAGCTTTCTAGACCATTT
BS05846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 840 | CG5412-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..926 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 17..464 | 2240 | 100 | Plus |
3R | 32079331 | 3R | 20577646..20578037 | 465..856 | 1960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:44:02 has no hits.
BS05846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:09 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:18 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:49 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:03 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:03 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577139..20577586 | 17..464 | 100 | -> | Plus |
3R | 20577646..20578037 | 465..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:49 Download gff for
BS05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 17..464 | 100 | -> | Plus |
arm_3R | 16403368..16403759 | 465..856 | 100 | | Plus |
BS05846.complete Sequence
872 bp (872 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635257
> BS05846.complete
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATTAGAAGCTTTCTAGACCAT
BS05846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 840 | CG5412-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..926 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 17..464 | 2240 | 100 | Plus |
3R | 32079331 | 3R | 20577646..20578037 | 465..856 | 1960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:52 has no hits.
BS05846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:35 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:59 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 132..971 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:03 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:37 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 132..971 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:36 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..926 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:36 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577646..20578037 | 465..856 | 100 | | Plus |
3R | 20577139..20577586 | 17..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:03 Download gff for
BS05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 17..464 | 100 | -> | Plus |
arm_3R | 16403368..16403759 | 465..856 | 100 | | Plus |
BS05846.pep Sequence
Translation from 16 to 855
> BS05846.pep
MTNNDAAVEAAGSSRASSSKQQLKLEITEKVRVLCLHGYRQNGEAFKNKL
GSFRKFANKYAEFVFITAPHVAKALESAAEPVPEQRSWWANKDDGSFKGT
NKGGPAFGFQESLRCVEEAWRTQGPFQGLLGFSQGACFVGLICGLAKKKL
TSIRPEFAVLASGFLSGSLVHMSAYEEAISIPTLHIYGQTDEIIPKEMSE
SLAARFKNAEVLEHSGGHYFPATAQQKQTFINFFQDRLQEYLEHEELQQS
GNASFVDSGAEDDNDAEVAAMTAELDESD*
BS05846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 279 | CG5412-PA | 1..279 | 1..279 | 1441 | 100 | Plus |