Clone BS05846 Report

Search the DGRC for BS05846

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG5412-RA
Protein status:BS05846.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05846.3prime Sequence

870 bp (863 high quality bases) assembled on 2005-12-03

> BS05846.3prime
ATGGTCTAGAAAGCTTCTAATCACTCTCGTCCAGCTCGGCCGTCATGGCC
GCCACCTCGGCATCGTTGTCGTCCTCCGCTCCGCTATCCACGAATGAGGC
ATTGCCGCTCTGCTGCAACTCCTCGTGCTCCAGGTACTCCTGCAGCCGAT
CCTGGAAGAAGTTGATGAATGTCTGCTTCTGCTGCGCCGTGGCCGGGAAG
TAGTGTCCGCCGCTGTGCTCCAGCACCTCGGCGTTCTTGAAGCGCGCAGC
CAGGGACTCGCTCATCTCCTTGGGAATGATCTCATCCGTCTGTCCGTAGA
TGTGCAACGTGGGTATGCTGATGGCCTCTTCGTAGGCGCTCATGTGCACC
AGACTGCCAGACAAGAAGCCCGAGGCTAGCACAGCAAACTCCGGACGGAT
GGAGGTCAACTTCTTTTTGGCCAGGCCGCATATAAGACCCACGAAACAGG
CGCCCTGTGAGAAGCCTAGCAGTCCCTGGAAAGGGCCCTGCGTCCGCCAC
GCCTCCTCAACGCAGCGCAGGCTCTCCTGAAAGCCGAAGGCGGGACCACC
TTTGTTTGTTCCCTTGAAGGAGCCATCGTCCTTGTTGGCCCACCAACTCC
TCTGCTCCGGCACAGGCTCCGCCGCCGACTCCAGTGCCTTGGCCACGTGC
GGCGCCGTGATGAACACGAACTCTGCGTACTTGTTGGCGAACTTGCGGAA
GGAGCCCAGCTTGTTTTTGAAGGCTTCTCCATTCTGGCGGTAACCGTGCA
GGCACAGGACTCGCACCTTCTCGGTGATTTCCAGCTTCAGCTGCTGTTTG
CTGCTGCTGGCCCGACTGGAGCCGGGCTGCTCCACGGCCGCATCGTTGTT
GGTCATGTCGACTGATAACT

BS05846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 840 CG5412-RA 32..840 825..17 4045 100 Minus
CG5412-PA 840 CG5412-RA 1..27 856..830 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..926 856..17 4155 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 856..409 2180 99.1 Minus
3R 32079331 3R 20577646..20578037 408..17 1960 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:18:08 has no hits.

BS05846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:08 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 17..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:17 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 17..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:25 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:36:11 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:36:11 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20577139..20577586 409..856 99 -> Minus
3R 20577646..20578037 17..408 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:25 Download gff for BS05846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 409..856 99 -> Minus
arm_3R 16403368..16403759 17..408 100   Minus

BS05846.5prime Sequence

874 bp (842 high quality bases) assembled on 2005-12-03

> BS05846.5prime
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATTAGAAGCTTTCTAGACCATTT

BS05846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 840 CG5412-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..926 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 17..464 2240 100 Plus
3R 32079331 3R 20577646..20578037 465..856 1960 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:44:02 has no hits.

BS05846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:09 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:18 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:49 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:03 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:03 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20577139..20577586 17..464 100 -> Plus
3R 20577646..20578037 465..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:49 Download gff for BS05846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 17..464 100 -> Plus
arm_3R 16403368..16403759 465..856 100   Plus

BS05846.complete Sequence

872 bp (872 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635257

> BS05846.complete
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATTAGAAGCTTTCTAGACCAT

BS05846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 840 CG5412-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..926 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 17..464 2240 100 Plus
3R 32079331 3R 20577646..20578037 465..856 1960 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:52 has no hits.

BS05846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:35 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:59 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 132..971 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:03 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:37 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 132..971 17..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:36 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..926 17..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:36 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20577646..20578037 465..856 100   Plus
3R 20577139..20577586 17..464 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:03 Download gff for BS05846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 17..464 100 -> Plus
arm_3R 16403368..16403759 465..856 100   Plus

BS05846.pep Sequence

Translation from 16 to 855

> BS05846.pep
MTNNDAAVEAAGSSRASSSKQQLKLEITEKVRVLCLHGYRQNGEAFKNKL
GSFRKFANKYAEFVFITAPHVAKALESAAEPVPEQRSWWANKDDGSFKGT
NKGGPAFGFQESLRCVEEAWRTQGPFQGLLGFSQGACFVGLICGLAKKKL
TSIRPEFAVLASGFLSGSLVHMSAYEEAISIPTLHIYGQTDEIIPKEMSE
SLAARFKNAEVLEHSGGHYFPATAQQKQTFINFFQDRLQEYLEHEELQQS
GNASFVDSGAEDDNDAEVAAMTAELDESD*

BS05846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 279 CG5412-PA 1..279 1..279 1441 100 Plus