Clone Sequence Records
BS05847.5prime Sequence
846 bp (788 high quality bases) assembled on 2005-12-03
> BS05847.5prime
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTTAAAAGCTTTCTAGACC
BS05847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 816 | CG10912-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 35..852 | 15..832 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056122..18056561 | 832..393 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 18056651..18057031 | 395..15 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:06:31 has no hits.
BS05847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:11 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:20 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:30 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 31..857 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:46 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 31..857 | 10..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:46 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056117..18056559 | 395..838 | 99 | <- | Minus |
2R | 18056652..18057035 | 10..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:30 Download gff for
BS05847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943622..13944064 | 395..838 | 99 | <- | Minus |
arm_2R | 13944157..13944540 | 10..394 | 99 | | Minus |
BS05847.3prime Sequence
200 bp (199 high quality bases) assembled on 2005-12-03
> BS05847.3prime
ATGGTCTAGAAAGCTTTTAACGAATATGTTTGAAAATATTGTCCAGTCTT
CTTGGAAATCGGTGCTGGCTGTTGCCACTGCTGTTTTCAACGGAACTAAA
ATGCGCAACTGTCGATGGAGATCTCGTTGTTGAGGAGGTGGAAGACGATG
AGGTGGTGGTTGAAGGAGATGGGGTCGTGGTGGTAGTAGTGGGGTTGGCG
BS05847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 816 | CG10912-RA | 633..811 | 200..22 | 895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 669..852 | 200..17 | 905 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056122..18056305 | 17..200 | 905 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:49:30 has no hits.
BS05847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:10 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 633..816 | 17..200 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:19 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 633..816 | 17..200 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:25 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 669..857 | 11..200 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:30 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 669..857 | 11..200 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:30 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056117..18056305 | 11..200 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:25 Download gff for
BS05847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943622..13943810 | 11..200 | 97 | | Plus |
BS05847.complete Sequence
848 bp (848 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635258
> BS05847.complete
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTTAAAAGCTTTCTAGACCAT
BS05847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 816 | CG10912-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 35..852 | 15..832 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056122..18056561 | 832..393 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 18056651..18057031 | 395..15 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:22 has no hits.
BS05847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:38 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:00 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 25..851 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:17 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 37..850 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:38 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 25..851 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:41 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 37..850 | 17..830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:41 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056124..18056559 | 395..830 | 100 | <- | Minus |
2R | 18056652..18057029 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:17 Download gff for
BS05847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943629..13944064 | 395..830 | 100 | <- | Minus |
arm_2R | 13944157..13944534 | 17..394 | 100 | | Minus |
BS05847.pep Sequence
Translation from 16 to 831
> BS05847.pep
MQSHLIAILLATVAIGSCIANPNLISGPSRILEIMSATSDIQRNNPQLTV
ECFDYYNDVFKTEYAEYVDEYNLCVDKYDGGYEQVLEQYNSVVWDLSNST
FESCMFLLDCDKQNNSENALSCYSTEGPTYSKQLSNVAANASVSVSSLRQ
QVETLVFTRDQCCSATSRNYEIRSGESYEDLQKCLSGENPVPERSTTTTS
SSSSSSTSTTAANPTTTTTTPSPSTTTSSSSTSSTTRSPSTVAHFSSVEN
SSGNSQHRFPRRLDNIFKHIL*
BS05847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 271 | CG10912-PA | 1..271 | 1..271 | 1394 | 100 | Plus |
CG10911-PA | 359 | CG10911-PA | 5..257 | 5..255 | 273 | 30.2 | Plus |
CG31041-PA | 198 | CG31041-PA | 1..188 | 1..189 | 236 | 28.4 | Plus |
CG7567-PA | 211 | CG7567-PA | 7..203 | 5..196 | 229 | 28.3 | Plus |
CG16762-PA | 254 | CG16762-PA | 16..239 | 5..223 | 193 | 25.9 | Plus |