Clone BS05847 Report

Search the DGRC for BS05847

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10912-RA
Protein status:BS05847.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05847.5prime Sequence

846 bp (788 high quality bases) assembled on 2005-12-03

> BS05847.5prime
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTTAAAAGCTTTCTAGACC

BS05847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 816 CG10912-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 35..852 15..832 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056122..18056561 832..393 2200 100 Minus
2R 25286936 2R 18056651..18057031 395..15 1905 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:06:31 has no hits.

BS05847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:11 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:20 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:47:30 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 31..857 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:46 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 31..857 10..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:46 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18056117..18056559 395..838 99 <- Minus
2R 18056652..18057035 10..394 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:47:30 Download gff for BS05847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943622..13944064 395..838 99 <- Minus
arm_2R 13944157..13944540 10..394 99   Minus

BS05847.3prime Sequence

200 bp (199 high quality bases) assembled on 2005-12-03

> BS05847.3prime
ATGGTCTAGAAAGCTTTTAACGAATATGTTTGAAAATATTGTCCAGTCTT
CTTGGAAATCGGTGCTGGCTGTTGCCACTGCTGTTTTCAACGGAACTAAA
ATGCGCAACTGTCGATGGAGATCTCGTTGTTGAGGAGGTGGAAGACGATG
AGGTGGTGGTTGAAGGAGATGGGGTCGTGGTGGTAGTAGTGGGGTTGGCG

BS05847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 816 CG10912-RA 633..811 200..22 895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 669..852 200..17 905 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056122..18056305 17..200 905 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 13:49:30 has no hits.

BS05847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:10 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 633..816 17..200 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:19 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 633..816 17..200 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:25 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 669..857 11..200 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:30 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 669..857 11..200 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:30 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18056117..18056305 11..200 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:25 Download gff for BS05847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943622..13943810 11..200 97   Plus

BS05847.complete Sequence

848 bp (848 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635258

> BS05847.complete
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTTAAAAGCTTTCTAGACCAT

BS05847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 816 CG10912-PA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 35..852 15..832 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056122..18056561 832..393 2200 100 Minus
2R 25286936 2R 18056651..18057031 395..15 1905 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:17:22 has no hits.

BS05847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:38 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:00 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 25..851 10..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:17 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 37..850 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:38 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 25..851 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:41 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 37..850 17..830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:41 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18056124..18056559 395..830 100 <- Minus
2R 18056652..18057029 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:17 Download gff for BS05847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943629..13944064 395..830 100 <- Minus
arm_2R 13944157..13944534 17..394 100   Minus

BS05847.pep Sequence

Translation from 16 to 831

> BS05847.pep
MQSHLIAILLATVAIGSCIANPNLISGPSRILEIMSATSDIQRNNPQLTV
ECFDYYNDVFKTEYAEYVDEYNLCVDKYDGGYEQVLEQYNSVVWDLSNST
FESCMFLLDCDKQNNSENALSCYSTEGPTYSKQLSNVAANASVSVSSLRQ
QVETLVFTRDQCCSATSRNYEIRSGESYEDLQKCLSGENPVPERSTTTTS
SSSSSSTSTTAANPTTTTTTPSPSTTTSSSSTSSTTRSPSTVAHFSSVEN
SSGNSQHRFPRRLDNIFKHIL*

BS05847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 271 CG10912-PA 1..271 1..271 1394 100 Plus
CG10911-PA 359 CG10911-PA 5..257 5..255 273 30.2 Plus
CG31041-PA 198 CG31041-PA 1..188 1..189 236 28.4 Plus
CG7567-PA 211 CG7567-PA 7..203 5..196 229 28.3 Plus
CG16762-PA 254 CG16762-PA 16..239 5..223 193 25.9 Plus