Clone BS05848 Report

Search the DGRC for BS05848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG6332-RA
Protein status:BS05848.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05848.3prime Sequence

821 bp (726 high quality bases) assembled on 2005-12-03

> BS05848.3prime
ATGGTCTAGAAAGCTTTTATCCACCCTTGGGCTTGGCCAACTCGATGAGG
CGTGGCGAGGCTTTGGCCTTCAGAGCCGCCGGCGATATGGCAAACGGATT
CTCCCGGATATGCGTGTTCTCGAACTCCTTGGGCTCCGCCAGCTCCTTGA
TCCGCGTGCTCGCCTTGTATTTGAGCGCGTTTGGCGCGATACCGAATGGA
TTCTCCTTGACATCCGCCAGTCCTTGGTTGGCATCGCGCGTGGTAAGTGG
CTCGGACATCTCCTTGATGCGGGCACTCGGCTTGTAGCGAAGGGCATTGG
GCGAGACCTTCTCCGGATTCTCGTTGATGTGGACATTATCGCGCACGACG
GGCTGCGATATTTGCTTGATCCGCTTGGTCGCCTTGTAGTCCTTCATCTG
GGAGGTCAGCTCCCACTTGGGTTTGATCTCCTCCAAATAGGCCTTGGGAC
TGGCCAGCTGATTGAGACGCACGGGATCGAACTCCCCAGCTCCACGATCC
GGTTTCGGGACCTTTGGTGCTTTCTTTGGTTTCGCCAACTTTTCGATGTA
CTTCTCGTGCTTAGCCAGCTGCTTCTCCGTCTTCTTCTTCTTTTTCTTCG
GCTTAACCAACGGCTGGATATTCGTGAGACGACTGTACAGCGATAGATAG
CTGTAGCGAAGCCATCTGTTCAGTATGGACTCCCCAATTGAGTCGCCCGC
CAGAATGGCCGTTCGCCGCCTGTGAAGCAATCGACGGACCGTGGGCAGAG
CTAGTTGCTCGGTGCGTGTGTGATTCTGGGCGTCACATGGTCGCACCATC
TCGATGGACTTGGGAAATGAG

BS05848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 1062 CG6332-RA 258..1062 821..17 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 389..1193 821..17 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22015827..22016089 279..17 1315 100 Minus
3R 32079331 3R 22015085..22015307 821..599 1115 100 Minus
3R 32079331 3R 22015540..22015760 500..280 1105 100 Minus
3R 32079331 3R 22015380..22015480 599..499 505 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:12:28 has no hits.

BS05848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:12 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 258..1062 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:22 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 258..1062 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:33 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 389..1198 11..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:05 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 389..1198 11..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:05 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22015827..22016094 11..279 98   Minus
3R 22015541..22015760 280..499 100 -> Minus
3R 22015085..22015306 600..821 100 -> Minus
3R 22015380..22015479 500..599 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:33 Download gff for BS05848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17840807..17841028 600..821 100 -> Minus
arm_3R 17841102..17841201 500..599 100 -> Minus
arm_3R 17841263..17841482 280..499 100 -> Minus
arm_3R 17841549..17841816 11..279 98   Minus

BS05848.5prime Sequence

886 bp (839 high quality bases) assembled on 2005-12-03

> BS05848.5prime
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCACCCAAGACTGGCGGATGTCA

BS05848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 1062 CG6332-RA 1..856 17..872 4255 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 132..1002 17..886 4315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22014828..22015307 17..496 2400 100 Plus
3R 32079331 3R 22015540..22015760 595..815 1105 100 Plus
3R 32079331 3R 22015380..22015480 496..596 505 100 Plus
3R 32079331 3R 22015827..22015898 816..886 295 97.2 Plus
Blast to na_te.dros performed on 2015-02-13 08:43:56 has no hits.

BS05848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:14 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:24 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:46 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1001 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:27 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1001 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:27 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22014822..22015306 9..495 99 -> Plus
3R 22015380..22015479 496..595 100 -> Plus
3R 22015541..22015760 596..815 100 -> Plus
3R 22015827..22015897 816..885 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:46 Download gff for BS05848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17840544..17841028 9..495 99 -> Plus
arm_3R 17841102..17841201 496..595 100 -> Plus
arm_3R 17841263..17841482 596..815 100 -> Plus
arm_3R 17841549..17841619 816..885 97   Plus

BS05848.complete Sequence

1094 bp (1094 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635259

> BS05848.complete
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCAACCAAGGACTGGCGGATGTCAAGGAGAATCCATT
CGGTATCGCGCCAAACGCGCTCAAATACAAGGCGAGCACGCGGATCAAGG
AGCTGGCGGAGCCCAAGGAGTTCGAGAACACGCATATCCGGGAGAATCCG
TTTGCCATATCGCCGGCGGCTCTGAAGGCCAAAGCCTCGCCACGCCTCAT
CGAGTTGGCCAAGCCCAAGGGTGGATAAAAGCTTTCTAGACCAT

BS05848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1062 CG6332-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 132..1193 17..1078 5310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22014828..22015307 17..496 2400 100 Plus
3R 32079331 3R 22015827..22016089 816..1078 1315 100 Plus
3R 32079331 3R 22015540..22015760 595..815 1105 100 Plus
3R 32079331 3R 22015380..22015480 496..596 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:02:13 has no hits.

BS05848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:39 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 1..1062 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:02 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1198 9..1084 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:01 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 132..1191 17..1076 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:39 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1198 9..1084 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:16 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 132..1191 17..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:16 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22015827..22016087 816..1076 100   Plus
3R 22014828..22015306 17..495 100 -> Plus
3R 22015380..22015479 496..595 100 -> Plus
3R 22015541..22015760 596..815 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:01 Download gff for BS05848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17841549..17841809 816..1076 100   Plus
arm_3R 17840550..17841028 17..495 100 -> Plus
arm_3R 17841102..17841201 496..595 100 -> Plus
arm_3R 17841263..17841482 596..815 100 -> Plus

BS05848.pep Sequence

Translation from 16 to 1077

> BS05848.pep
MTIQGLKCDLSPTVTTCLQLKDCVRPDCCPIRDPIPYDAECFVRDIGQEL
DKLTRRHERMFVKRRRLMEMAIPRRRTCRFVPKCACSFPKSIEMVRPCDA
QNHTRTEQLALPTVRRLLHRRRTAILAGDSIGESILNRWLRYSYLSLYSR
LTNIQPLVKPKKKKKKTEKQLAKHEKYIEKLAKPKKAPKVPKPDRGAGEF
DPVRLNQLASPKAYLEEIKPKWELTSQMKDYKATKRIKQISQPVVRDNVH
INENPEKVSPNALRYKPSARIKEMSEPLTTRDANQGLADVKENPFGIAPN
ALKYKASTRIKELAEPKEFENTHIRENPFAISPAALKAKASPRLIELAKP
KGG*

BS05848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 353 CG6332-PA 1..353 1..353 1848 100 Plus