Clone Sequence Records
BS05848.3prime Sequence
821 bp (726 high quality bases) assembled on 2005-12-03
> BS05848.3prime
ATGGTCTAGAAAGCTTTTATCCACCCTTGGGCTTGGCCAACTCGATGAGG
CGTGGCGAGGCTTTGGCCTTCAGAGCCGCCGGCGATATGGCAAACGGATT
CTCCCGGATATGCGTGTTCTCGAACTCCTTGGGCTCCGCCAGCTCCTTGA
TCCGCGTGCTCGCCTTGTATTTGAGCGCGTTTGGCGCGATACCGAATGGA
TTCTCCTTGACATCCGCCAGTCCTTGGTTGGCATCGCGCGTGGTAAGTGG
CTCGGACATCTCCTTGATGCGGGCACTCGGCTTGTAGCGAAGGGCATTGG
GCGAGACCTTCTCCGGATTCTCGTTGATGTGGACATTATCGCGCACGACG
GGCTGCGATATTTGCTTGATCCGCTTGGTCGCCTTGTAGTCCTTCATCTG
GGAGGTCAGCTCCCACTTGGGTTTGATCTCCTCCAAATAGGCCTTGGGAC
TGGCCAGCTGATTGAGACGCACGGGATCGAACTCCCCAGCTCCACGATCC
GGTTTCGGGACCTTTGGTGCTTTCTTTGGTTTCGCCAACTTTTCGATGTA
CTTCTCGTGCTTAGCCAGCTGCTTCTCCGTCTTCTTCTTCTTTTTCTTCG
GCTTAACCAACGGCTGGATATTCGTGAGACGACTGTACAGCGATAGATAG
CTGTAGCGAAGCCATCTGTTCAGTATGGACTCCCCAATTGAGTCGCCCGC
CAGAATGGCCGTTCGCCGCCTGTGAAGCAATCGACGGACCGTGGGCAGAG
CTAGTTGCTCGGTGCGTGTGTGATTCTGGGCGTCACATGGTCGCACCATC
TCGATGGACTTGGGAAATGAG
BS05848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 1062 | CG6332-RA | 258..1062 | 821..17 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 389..1193 | 821..17 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22015827..22016089 | 279..17 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 22015085..22015307 | 821..599 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 22015540..22015760 | 500..280 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 22015380..22015480 | 599..499 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:12:28 has no hits.
BS05848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:12 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 258..1062 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:22 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 258..1062 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:33 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 389..1198 | 11..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:05 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 389..1198 | 11..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:05 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22015827..22016094 | 11..279 | 98 | | Minus |
3R | 22015541..22015760 | 280..499 | 100 | -> | Minus |
3R | 22015085..22015306 | 600..821 | 100 | -> | Minus |
3R | 22015380..22015479 | 500..599 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:33 Download gff for
BS05848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17840807..17841028 | 600..821 | 100 | -> | Minus |
arm_3R | 17841102..17841201 | 500..599 | 100 | -> | Minus |
arm_3R | 17841263..17841482 | 280..499 | 100 | -> | Minus |
arm_3R | 17841549..17841816 | 11..279 | 98 | | Minus |
BS05848.5prime Sequence
886 bp (839 high quality bases) assembled on 2005-12-03
> BS05848.5prime
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCACCCAAGACTGGCGGATGTCA
BS05848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 1062 | CG6332-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 132..1002 | 17..886 | 4315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22014828..22015307 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 22015540..22015760 | 595..815 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 22015380..22015480 | 496..596 | 505 | 100 | Plus |
3R | 32079331 | 3R | 22015827..22015898 | 816..886 | 295 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:43:56 has no hits.
BS05848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:14 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:24 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:46 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1001 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:27 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1001 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:27 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22014822..22015306 | 9..495 | 99 | -> | Plus |
3R | 22015380..22015479 | 496..595 | 100 | -> | Plus |
3R | 22015541..22015760 | 596..815 | 100 | -> | Plus |
3R | 22015827..22015897 | 816..885 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:46 Download gff for
BS05848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17840544..17841028 | 9..495 | 99 | -> | Plus |
arm_3R | 17841102..17841201 | 496..595 | 100 | -> | Plus |
arm_3R | 17841263..17841482 | 596..815 | 100 | -> | Plus |
arm_3R | 17841549..17841619 | 816..885 | 97 | | Plus |
BS05848.complete Sequence
1094 bp (1094 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635259
> BS05848.complete
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCAACCAAGGACTGGCGGATGTCAAGGAGAATCCATT
CGGTATCGCGCCAAACGCGCTCAAATACAAGGCGAGCACGCGGATCAAGG
AGCTGGCGGAGCCCAAGGAGTTCGAGAACACGCATATCCGGGAGAATCCG
TTTGCCATATCGCCGGCGGCTCTGAAGGCCAAAGCCTCGCCACGCCTCAT
CGAGTTGGCCAAGCCCAAGGGTGGATAAAAGCTTTCTAGACCAT
BS05848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1062 | CG6332-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 132..1193 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22014828..22015307 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 22015827..22016089 | 816..1078 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 22015540..22015760 | 595..815 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 22015380..22015480 | 496..596 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:13 has no hits.
BS05848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:39 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:02 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1198 | 9..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:01 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 132..1191 | 17..1076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:39 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1198 | 9..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:16 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 132..1191 | 17..1076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:16 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22015827..22016087 | 816..1076 | 100 | | Plus |
3R | 22014828..22015306 | 17..495 | 100 | -> | Plus |
3R | 22015380..22015479 | 496..595 | 100 | -> | Plus |
3R | 22015541..22015760 | 596..815 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:01 Download gff for
BS05848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17841549..17841809 | 816..1076 | 100 | | Plus |
arm_3R | 17840550..17841028 | 17..495 | 100 | -> | Plus |
arm_3R | 17841102..17841201 | 496..595 | 100 | -> | Plus |
arm_3R | 17841263..17841482 | 596..815 | 100 | -> | Plus |
BS05848.pep Sequence
Translation from 16 to 1077
> BS05848.pep
MTIQGLKCDLSPTVTTCLQLKDCVRPDCCPIRDPIPYDAECFVRDIGQEL
DKLTRRHERMFVKRRRLMEMAIPRRRTCRFVPKCACSFPKSIEMVRPCDA
QNHTRTEQLALPTVRRLLHRRRTAILAGDSIGESILNRWLRYSYLSLYSR
LTNIQPLVKPKKKKKKTEKQLAKHEKYIEKLAKPKKAPKVPKPDRGAGEF
DPVRLNQLASPKAYLEEIKPKWELTSQMKDYKATKRIKQISQPVVRDNVH
INENPEKVSPNALRYKPSARIKEMSEPLTTRDANQGLADVKENPFGIAPN
ALKYKASTRIKELAEPKEFENTHIRENPFAISPAALKAKASPRLIELAKP
KGG*
BS05848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 353 | CG6332-PA | 1..353 | 1..353 | 1848 | 100 | Plus |