Clone Sequence Records
BS05849.3prime Sequence
899 bp (801 high quality bases) assembled on 2005-12-03
> BS05849.3prime
ATGGTCTAGAAAGCTTTTAGTTAATGGCAAGTTGGTGTAGCGGATACTTG
GGGATAAAGTACTCCATGCGCTGGTTGCGTCTAATGGCGCACTCCTGGTA
CTCCAACCAGTCAGTGTAGGACTCATTGTGGCACTGCTCCGAATCCCCTT
TCTCGTAGAGCTGCTGGCGAAGGGAGAAAAAGAAGGGGCGCACTTTCTTC
TTTATGCTGTAGACGTGGCGCATCAGCCACTTTTCGACTTTAATCTCATT
GTAGATGGTCGATCTGTTCAAGCAGACGGTGGTCAGATTGTCCATTTTTG
GATAGTAATTACGGACCGGTTTCGGATCCACAGTTATTCGAGGTATTTCA
TGCCTAGCTACGGCGAAACGGGTGTCGAAGAAATGTCTACCAAAAGTGAC
GCCCCAAGCATTGTATTCCTTCTCCCCATATTGGTTTGTAACGAATTGTT
GAATACTGACGGTCAGCTCTTTGGGTGGTTCAGTTCCTTTTCCTCCGGCG
GCACCTCCTTCAGCCGCTCCTGCCGCCGCTGGAGCTCCATCAGCTGGCGC
CGCAGCTTCAGGCGGAGGTGGATCTTGTGGAGAAGCAAATAGTCGAATGC
CACTTTTATGGATTTTCTTAGGAGCAGTAGTGCTTCCTCGGGTCACAGTA
ATTGGTGGCGGATTAGTTTCATTGTAGCCAGCTCTACGGTGATAATCATC
CTGTAGTTTCTTTGCGAACACTCTGAAGCCGTCGGATTTCTGCTGCATTT
GGTTATTGGAGCTTTGATCCACCTTGAAAATATCGAACGTCGACGGATCT
GGTTTTACTTGCCTTGGAGCTCTCTCCACCGGAACATCCTCTGCCAAGAC
GATTGGAAGTGACTCCAGATCGGTTGTAGCCAATGGCAAGCCAACGACT
BS05849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 954 | CG11018-RA | 72..954 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 179..1062 | 899..16 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662667..19663550 | 899..16 | 4420 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:10:40 has no hits.
BS05849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:15 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 72..954 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:24 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 72..954 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:09 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 179..1065 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:48 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 179..1065 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:48 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662667..19663553 | 13..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:09 Download gff for
BS05849.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550172..15551058 | 13..899 | 99 | | Minus |
BS05849.5prime Sequence
948 bp (831 high quality bases) assembled on 2005-12-03
> BS05849.5prime
GAAGTTATCAGTCGACATGCATTGGTATGCAATCCTCCAAGGATTCCTCC
TGGGAATATCATCGATAATCATTTTATGGGTACAAGGAGTCGTTGGCTTG
CCATTGGCTACAACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGA
TGTTCCGGTGGAGAGAGCTCCAAGGCAAGTAAAACCAGATCCGTCGACGT
TCGATATTTTCAAGGTGGATCAAAGCTCCAATAACCAAATGCAGCAGAAA
TCCGACGGCTTCAGAGTGTTCGCAAAGAAACTACAGGATGATTATCACCG
TAGAGCTGGCTACAATGAAACTAATCCGCCACCAATTACTGTGACCCGAG
GAAGCACTACTGCTCCTAAGAAAATCCATAAAAGTGGCATTCGACTATTT
GCTTCTCCACAAGATCCACCTCCGCCTGAAGCTGCGGCGCCAGCTGATGG
AGCTCCAGCGGCGGCAGGAGCGGCTGAAGGAGGTGCCGCCGGAGGAAAAG
GAACTGAACCACCCAAAGAGCTGACCGTCAGTATTCAACAATTCGTTACA
AACCAATATGGGGAGAAGGAATACAATGCTTGGGGCGTCACTTTTGGTAG
ACATTTCTTCGACACCCGTTTCGCCGTAGCTAGGCATGAAATACCTCGAA
TAACTGTGGATCCGAAACCGGTCCGTAATTACTATCCAAAAATGGACAAT
CTGACCACCGTCTGCTTGAACAGATCGACCATCTACAATGAGATTAAAGT
CGAAAAGTGGCTGATGCGCCACGTCTACAGCATAAAGAAGAAAGTGCGCC
CCTTCTTTTTCTCCCTTCGCCAGCAGCTCTACGAGAAAGGGGATTCGGAG
CAGTGCCCACATGAGTCCTACACTGACTGGGTGGAGTACCAGGAGTGCGC
CATTAGACGCAACCAGCGCATGGAGTACTTTATCCCCCAGTATCCGCT
BS05849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 954 | CG11018-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG11018-PA | 954 | CG11018-RA | 845..932 | 861..948 | 390 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 108..1039 | 17..948 | 4585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662650..19663527 | 71..948 | 4315 | 99.4 | Plus |
| 2R | 25286936 | 2R | 19662543..19662596 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:04:18 has no hits.
BS05849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:16 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:26 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:56:51 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1039 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:26 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1039 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:26 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662543..19662596 | 17..70 | 100 | -> | Plus |
| 2R | 19662650..19663527 | 71..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:56:51 Download gff for
BS05849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550048..15550101 | 17..70 | 100 | -> | Plus |
| arm_2R | 15550155..15551032 | 71..948 | 99 | | Plus |
BS05849.complete Sequence
986 bp (986 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635260
> BS05849.complete
GAAGTTATCAGTCGACATGCATTGGTATGCAATCCTCCAAGGATTCCTCC
TGGGAATATCATCGATAATCATTTTATGGGTACAAGGAGTCGTTGGCTTG
CCATTGGCTACAACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGA
TGTTCCGGTGGAGAGAGCTCCAAGGCAAGTAAAACCAGATCCGTCGACGT
TCGATATTTTCAAGGTGGATCAAAGCTCCAATAACCAAATGCAGCAGAAA
TCCGACGGCTTCAGAGTGTTCGCAAAGAAACTACAGGATGATTATCACCG
TAGAGCTGGCTACAATGAAACTAATCCGCCACCAATTACTGTGACCCGAG
GAAGCACTACTGCTCCTAAGAAAATCCATAAAAGTGGCATTCGACTATTT
GCTTCTCCACAAGATCCACCTCCGCCTGAAGCTGCGGCGCCAGCTGATGG
AGCTCCAGCGGCGGCAGGAGCGGCTGAAGGAGGTGCCGCCGGAGGAAAAG
GAACTGAACCACCCAAAGAGCTGACCGTCAGTATTCAACAATTCGTTACA
AACCAATATGGGGAGAAGGAATACAATGCTTGGGGCGTCACTTTTGGTAG
ACATTTCTTCGACACCCGTTTCGCCGTAGCTAGGCATGAAATACCTCGAA
TAACTGTGGATCCGAAACCGGTCCGTAATTACTATCCAAAAATGGACAAT
CTGACCACCGTCTGCTTGAACAGATCGACCATCTACAATGAGATTAAAGT
CGAAAAGTGGCTGATGCGCCACGTCTACAGCATAAAGAAGAAAGTGCGCC
CCTTCTTTTTCTCCCTTCGCCAGCAGCTCTACGAGAAAGGGGATTCGGAG
CAGTGCCACAATGAGTCCTACACTGACTGGTTGGAGTACCAGGAGTGCGC
CATTAGACGCAACCAGCGCATGGAGTACTTTATCCCCAAGTATCCGCTAC
ACCAACTTGCCATTAACTAAAAGCTTTCTAGACCAT
BS05849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 954 | CG11018-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 108..1062 | 17..971 | 4775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662650..19663550 | 71..971 | 4505 | 100 | Plus |
| 2R | 25286936 | 2R | 19662543..19662596 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:36:08 has no hits.
BS05849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:41 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:04 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1065 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:58 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1059 | 17..968 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:41 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1065 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:59 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1059 | 17..968 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:59 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662543..19662596 | 17..70 | 100 | -> | Plus |
| 2R | 19662650..19663547 | 71..968 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:58 Download gff for
BS05849.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550048..15550101 | 17..70 | 100 | -> | Plus |
| arm_2R | 15550155..15551052 | 71..968 | 100 | | Plus |
BS05849.pep Sequence
Translation from 16 to 969
> BS05849.pep
MHWYAILQGFLLGISSIIILWVQGVVGLPLATTDLESLPIVLAEDVPVER
APRQVKPDPSTFDIFKVDQSSNNQMQQKSDGFRVFAKKLQDDYHRRAGYN
ETNPPPITVTRGSTTAPKKIHKSGIRLFASPQDPPPPEAAAPADGAPAAA
GAAEGGAAGGKGTEPPKELTVSIQQFVTNQYGEKEYNAWGVTFGRHFFDT
RFAVARHEIPRITVDPKPVRNYYPKMDNLTTVCLNRSTIYNEIKVEKWLM
RHVYSIKKKVRPFFFSLRQQLYEKGDSEQCHNESYTDWLEYQECAIRRNQ
RMEYFIPKYPLHQLAIN*
BS05849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 317 | CG11018-PA | 1..317 | 1..317 | 1693 | 100 | Plus |
