Clone Sequence Records
BS05852.3prime Sequence
663 bp (662 high quality bases) assembled on 2005-12-03
> BS05852.3prime
ATGGTCTAGAAAGCTTTTACCAACTCAGGCTTATCGACTCCTTGTTTAGG
GATCCTGGATTGATGGCCTCCATCTTGCGCATTCCCTTGCTGTCCACTAC
ATACACCTCAAAGTTCCGCTGGTTGATGATCAGTCGCCTTTGGATCTCCA
GGACGCACTTCTTCATCAGCGAGTAGGCATCCTCTTGGCTGAGCTTCGAG
TTCCAATATCTCTGCAGAATGCTGCCACAGAACATGCTGCCCCAACCATG
ACCTGCATGATTGATTGACTGAGCAGCGCCATAGGAGTCGATGTAGTGGA
GGTCAGGTCCCTCAACCGCATCGTATCCTGCCAGGAGCATTGCCACCTGG
TATCTGGTGTTGGTCCTTATATAATCCGCCAGTGTTTTCCTGGTAAAATG
GGCAGCTGACTTCGCACTTAGATGGTATCCGTGGGAAATCTTGTACAGAT
GCAAATTTTTGGATATGAAGTCGGTGAACTGAATGGTATCGCCACCATCA
CCCACCGTGGCCATCATATTGAAGTCTGATAGTCGGTGGATTTTTGATTG
GTCATCTTTCATGAAGACCAGCGATTTGGCCTGCATTGTATCTGATGCTA
GCATCACAAAGTCTGGTCCCTTGATCCCCAAAATAGTTTCCATCGCCATG
TCGACTGATAACT
BS05852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17302-PA | 633 | CG17302-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R2-RB | 1647 | CG17302-RB | 66..700 | 650..16 | 3175 | 100 | Minus |
Prosbeta4R2-RA | 757 | CG17302-RA | 66..700 | 650..16 | 3175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2655618..2656155 | 553..16 | 2690 | 100 | Minus |
2L | 23513712 | 2L | 2655459..2655556 | 650..553 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:12:15 has no hits.
BS05852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:18 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:30 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:30 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 66..702 | 13..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:02 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 66..702 | 13..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:02 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2655459..2655556 | 553..650 | 100 | -> | Minus |
2L | 2655619..2656157 | 13..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:30 Download gff for
BS05852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2655459..2655556 | 553..650 | 100 | -> | Minus |
arm_2L | 2655619..2656157 | 13..552 | 99 | | Minus |
BS05852.5prime Sequence
663 bp (662 high quality bases) assembled on 2005-12-03
> BS05852.5prime
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGTAAA
AGCTTTCTAGACC
BS05852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17302-PA | 633 | CG17302-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R2-RB | 1647 | CG17302-RB | 66..700 | 16..650 | 3175 | 100 | Plus |
Prosbeta4R2-RA | 757 | CG17302-RA | 66..700 | 16..650 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2655618..2656155 | 113..650 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 2655459..2655556 | 16..113 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:15:11 has no hits.
BS05852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:19 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:31 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:10 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 66..702 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:16 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 66..702 | 16..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:16 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2655459..2655556 | 16..113 | 100 | -> | Plus |
2L | 2655619..2656157 | 114..653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:10 Download gff for
BS05852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2655459..2655556 | 16..113 | 100 | -> | Plus |
arm_2L | 2655619..2656157 | 114..653 | 99 | | Plus |
BS05852.complete Sequence
665 bp (665 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635262
> BS05852.complete
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGTAAA
AGCTTTCTAGACCAT
BS05852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R2-RB | 633 | CG17302-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
Prosbeta4R2-RA | 633 | CG17302-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R2-RB | 1647 | CG17302-RB | 66..700 | 16..650 | 3175 | 100 | Plus |
Prosbeta4R2-RA | 757 | CG17302-RA | 66..700 | 16..650 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2655618..2656155 | 113..650 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 2655459..2655556 | 16..113 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:12:37 has no hits.
BS05852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:43 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:07 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-RA | 66..702 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:25 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 67..697 | 17..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:43 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17302-RA | 66..702 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:21 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R2-RA | 67..697 | 17..647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:21 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2655619..2656152 | 114..647 | 100 | | Plus |
2L | 2655460..2655556 | 17..113 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:25 Download gff for
BS05852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2655460..2655556 | 17..113 | 100 | -> | Plus |
arm_2L | 2655619..2656152 | 114..647 | 100 | | Plus |
BS05852.pep Sequence
Translation from 16 to 648
> BS05852.pep
MAMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVG
DGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRY
QVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWN
SKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGS
LNKESISLSW*
BS05852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R2-PB | 210 | CG17302-PB | 1..210 | 1..210 | 1094 | 100 | Plus |
Prosbeta4R2-PA | 210 | CG17302-PA | 1..210 | 1..210 | 1094 | 100 | Plus |
Prosbeta4-PB | 201 | CG17331-PB | 1..199 | 3..201 | 609 | 55.3 | Plus |
Prosbeta4-PA | 201 | CG17331-PA | 1..199 | 3..201 | 609 | 55.3 | Plus |
Prosbeta4R1-PA | 215 | CG17301-PA | 1..205 | 3..207 | 525 | 43.9 | Plus |