Clone BS05852 Report

Search the DGRC for BS05852

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta4R2-RA
Protein status:BS05852.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05852.3prime Sequence

663 bp (662 high quality bases) assembled on 2005-12-03

> BS05852.3prime
ATGGTCTAGAAAGCTTTTACCAACTCAGGCTTATCGACTCCTTGTTTAGG
GATCCTGGATTGATGGCCTCCATCTTGCGCATTCCCTTGCTGTCCACTAC
ATACACCTCAAAGTTCCGCTGGTTGATGATCAGTCGCCTTTGGATCTCCA
GGACGCACTTCTTCATCAGCGAGTAGGCATCCTCTTGGCTGAGCTTCGAG
TTCCAATATCTCTGCAGAATGCTGCCACAGAACATGCTGCCCCAACCATG
ACCTGCATGATTGATTGACTGAGCAGCGCCATAGGAGTCGATGTAGTGGA
GGTCAGGTCCCTCAACCGCATCGTATCCTGCCAGGAGCATTGCCACCTGG
TATCTGGTGTTGGTCCTTATATAATCCGCCAGTGTTTTCCTGGTAAAATG
GGCAGCTGACTTCGCACTTAGATGGTATCCGTGGGAAATCTTGTACAGAT
GCAAATTTTTGGATATGAAGTCGGTGAACTGAATGGTATCGCCACCATCA
CCCACCGTGGCCATCATATTGAAGTCTGATAGTCGGTGGATTTTTGATTG
GTCATCTTTCATGAAGACCAGCGATTTGGCCTGCATTGTATCTGATGCTA
GCATCACAAAGTCTGGTCCCTTGATCCCCAAAATAGTTTCCATCGCCATG
TCGACTGATAACT

BS05852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17302-PA 633 CG17302-RA 1..633 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..700 650..16 3175 100 Minus
Prosbeta4R2-RA 757 CG17302-RA 66..700 650..16 3175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656155 553..16 2690 100 Minus
2L 23513712 2L 2655459..2655556 650..553 490 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:12:15 has no hits.

BS05852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:18 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:30 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:30 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 13..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:02 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 13..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:02 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2655459..2655556 553..650 100 -> Minus
2L 2655619..2656157 13..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:30 Download gff for BS05852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655459..2655556 553..650 100 -> Minus
arm_2L 2655619..2656157 13..552 99   Minus

BS05852.5prime Sequence

663 bp (662 high quality bases) assembled on 2005-12-03

> BS05852.5prime
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGTAAA
AGCTTTCTAGACC

BS05852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17302-PA 633 CG17302-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..700 16..650 3175 100 Plus
Prosbeta4R2-RA 757 CG17302-RA 66..700 16..650 3175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656155 113..650 2690 100 Plus
2L 23513712 2L 2655459..2655556 16..113 490 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:15:11 has no hits.

BS05852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:19 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:31 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:10 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 16..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:16 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 16..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:16 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2655459..2655556 16..113 100 -> Plus
2L 2655619..2656157 114..653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:10 Download gff for BS05852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655459..2655556 16..113 100 -> Plus
arm_2L 2655619..2656157 114..653 99   Plus

BS05852.complete Sequence

665 bp (665 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635262

> BS05852.complete
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGTAAA
AGCTTTCTAGACCAT

BS05852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 633 CG17302-PB 1..633 17..649 3165 100 Plus
Prosbeta4R2-RA 633 CG17302-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..700 16..650 3175 100 Plus
Prosbeta4R2-RA 757 CG17302-RA 66..700 16..650 3175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656155 113..650 2690 100 Plus
2L 23513712 2L 2655459..2655556 16..113 490 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:12:37 has no hits.

BS05852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:43 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:07 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 66..702 16..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:25 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 67..697 17..647 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:43 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 66..702 16..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:21 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 67..697 17..647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:21 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655619..2656152 114..647 100   Plus
2L 2655460..2655556 17..113 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:25 Download gff for BS05852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655460..2655556 17..113 100 -> Plus
arm_2L 2655619..2656152 114..647 100   Plus

BS05852.pep Sequence

Translation from 16 to 648

> BS05852.pep
MAMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVG
DGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRY
QVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWN
SKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGS
LNKESISLSW*

BS05852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-PB 210 CG17302-PB 1..210 1..210 1094 100 Plus
Prosbeta4R2-PA 210 CG17302-PA 1..210 1..210 1094 100 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 3..201 609 55.3 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 3..201 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..205 3..207 525 43.9 Plus