Clone BS05853 Report

Search the DGRC for BS05853

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG11808-RA
Protein status:BS05853.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05853.3prime Sequence

690 bp (689 high quality bases) assembled on 2005-12-03

> BS05853.3prime
ATGGTCTAGAAAGCTTCTACTCCTGCATGTACTTTTGGCGGTAATTGTAC
AGCTTGCGCAGCCACTTCTCGGCCTTCATATCCGGGTCGCCCAGGAAGTT
CGGATGGAATATTACATCTTCGTTTCGGACTGCAGTGGCTGGCTTGCTGG
CGACTGTGACCGTTTCATTGTTCAGATCTATGATCACCTTATCGGATGTC
TCCTTTGAATCCCTGGAGCTAAAAAATGACTCCGGCTTGAAGGTGTCCTC
GTCTATAGTCTCGAGTGCCTTTTGCACCTTGGTGTCGAACAGATCGATGG
CCTTCACGGGAGCAGCTGCGGGTGTGGTTGCGGATCGGGAATTGCTTTCC
GAACTTGGACCCCTGGTTTTCCTCTGCGAAATAGACCGCGATTTGTGATG
ATCCCTGGTTCTGCTTTTGCTGTGCGTGCTGCGGGAACTACTCCTGCTGC
TGGAGGAGCTGCGCGAGGTGCTGCGACTGCTACTGCGACTCCTTCTCGAG
TACTTTTTCGACTTCTTGGCCTTTTTCTTCTTCGGTTTTGAAACCTGCCG
GCTGCTCCTGCTGGGCGACTTTGATCTGTGTCGTCTGTCGCGGTCTCGCT
CTCTGTCTCTTTCTCGGTCCCGATCTCTATCCCTCTCTCTGTCGCGATCT
CTGTCACGGCGGTCGCGATCCCTCATGTCGACTGATAACT

BS05853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-PA 660 CG11808-RA 1..660 676..17 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-RA 801 CG11808-RA 94..753 676..17 3300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15216300..15216878 676..98 2895 100 Minus
2R 25286936 2R 15216942..15217022 97..17 405 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:22:57 has no hits.

BS05853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:20 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:32 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-PA 1..660 17..676 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:06 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..760 10..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:32 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..760 10..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:32 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15216300..15216878 98..676 100 -> Minus
2R 15216942..15217029 10..97 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:06 Download gff for BS05853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11103805..11104383 98..676 100 -> Minus
arm_2R 11104447..11104534 10..97 95   Minus

BS05853.5prime Sequence

690 bp (689 high quality bases) assembled on 2005-12-03

> BS05853.5prime
GAAGTTATCAGTCGACATGAGGGATCGCGACCGCCGTGACAGAGATCGCG
ACAGAGAGAGGGATAGAGATCGGGACCGAGAAAGAGACAGAGAGCGAGAC
CGCGACAGACGACACAGATCAAAGTCGCCCAGCAGGAGCAGCCGGCAGGT
TTCAAAACCGAAGAAGAAAAAGGCCAAGAAGTCGAAAAAGTACTCGAGAA
GGAGTCGCAGTAGCAGTCGCAGCACCTCGCGCAGCTCCTCCAGCAGCAGG
AGTAGTTCCCGCAGCACGCACAGCAAAAGCAGAACCAGGGATCATCACAA
ATCGCGGTCTATTTCGCAGAGGAAAACCAGGGGTCCAAGTTCGGAAAGCA
ATTCCCGATCCGCAACCACACCCGCAGCTGCTCCCGTGAAGGCCATCGAT
CTGTTCGACACCAAGGTGCAAAAGGCACTCGAGACTATAGACGAGGACAC
CTTCAAGCCGGAGTCATTTTTTAGCTCCAGGGATTCAAAGGAGACATCCG
ATAAGGTGATCATAGATCTGAACAATGAAACGGTCACAGTCGCCAGCAAG
CCAGCCACTGCAGTCCGAAACGAAGATGTAATATTCCATCCGAACTTCCT
GGGCGACCCGGATATGAAGGCCGAGAAGTGGCTGCGCAAGCTGTACAATT
ACCGCCAAAAGTACATGCAGGAGTAGAAGCTTTCTAGACC

BS05853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-PA 660 CG11808-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-RA 801 CG11808-RA 94..753 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15216300..15216878 17..595 2895 100 Plus
2R 25286936 2R 15216942..15217022 596..676 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:15:02 has no hits.

BS05853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:21 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:34 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:08 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..760 17..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:15 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..760 17..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:15 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15216300..15216878 17..595 100 -> Plus
2R 15216942..15217029 596..683 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:08 Download gff for BS05853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11103805..11104383 17..595 100 -> Plus
arm_2R 11104447..11104534 596..683 95   Plus

BS05853.complete Sequence

692 bp (692 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635263

> BS05853.complete
GAAGTTATCAGTCGACATGAGGGATCGCGACCGCCGTGACAGAGATCGCG
ACAGAGAGAGGGATAGAGATCGGGACCGAGAAAGAGACAGAGAGCGAGAC
CGCGACAGACGACACAGATCAAAGTCGCCCAGCAGGAGCAGCCGGCAGGT
TTCAAAACCGAAGAAGAAAAAGGCCAAGAAGTCGAAAAAGTACTCGAGAA
GGAGTCGCAGTAGCAGTCGCAGCACCTCGCGCAGCTCCTCCAGCAGCAGG
AGTAGTTCCCGCAGCACGCACAGCAAAAGCAGAACCAGGGATCATCACAA
ATCGCGGTCTATTTCGCAGAGGAAAACCAGGGGTCCAAGTTCGGAAAGCA
ATTCCCGATCCGCAACCACACCCGCAGCTGCTCCCGTGAAGGCCATCGAT
CTGTTCGACACCAAGGTGCAAAAGGCACTCGAGACTATAGACGAGGACAC
CTTCAAGCCGGAGTCATTTTTTAGCTCCAGGGATTCAAAGGAGACATCCG
ATAAGGTGATCATAGATCTGAACAATGAAACGGTCACAGTCGCCAGCAAG
CCAGCCACTGCAGTCCGAAACGAAGATGTAATATTCCATCCGAACTTCCT
GGGCGACCCGGATATGAAGGCCGAGAAGTGGCTGCGCAAGCTGTACAATT
ACCGCCAAAAGTACATGCAGGAGTAGAAGCTTTCTAGACCAT

BS05853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-RA 660 CG11808-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-RA 801 CG11808-RA 94..753 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15216300..15216878 17..595 2895 100 Plus
2R 25286936 2R 15216942..15217022 596..676 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:08:38 has no hits.

BS05853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:44 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:08 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 92..758 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:41 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..753 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:44 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 92..758 17..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:49 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
CG11808-RA 94..753 17..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:49 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15216300..15216878 17..595 100 -> Plus
2R 15216942..15217022 596..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:41 Download gff for BS05853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11103805..11104383 17..595 100 -> Plus
arm_2R 11104447..11104527 596..676 100   Plus

BS05853.pep Sequence

Translation from 16 to 675

> BS05853.pep
MRDRDRRDRDRDRERDRDRDRERDRERDRDRRHRSKSPSRSSRQVSKPKK
KKAKKSKKYSRRSRSSSRSTSRSSSSSRSSSRSTHSKSRTRDHHKSRSIS
QRKTRGPSSESNSRSATTPAAAPVKAIDLFDTKVQKALETIDEDTFKPES
FFSSRDSKETSDKVIIDLNNETVTVASKPATAVRNEDVIFHPNFLGDPDM
KAEKWLRKLYNYRQKYMQE*

BS05853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11808-PA 219 CG11808-PA 1..219 1..219 1108 100 Plus
CG12877-PC 991 CG12877-PC 200..326 1..123 213 41.5 Plus
SF1-PC 323 CG5836-PC 53..217 2..144 192 36.5 Plus
SF1-PB 347 CG5836-PB 53..217 2..144 192 36.5 Plus
SF1-PA 787 CG5836-PA 53..217 2..144 192 36.5 Plus
CG12877-PC 991 CG12877-PC 170..295 2..115 176 34.9 Plus
CG12877-PC 991 CG12877-PC 221..350 2..131 166 33.6 Plus