Clone Sequence Records
BS05853.3prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-03
> BS05853.3prime
ATGGTCTAGAAAGCTTCTACTCCTGCATGTACTTTTGGCGGTAATTGTAC
AGCTTGCGCAGCCACTTCTCGGCCTTCATATCCGGGTCGCCCAGGAAGTT
CGGATGGAATATTACATCTTCGTTTCGGACTGCAGTGGCTGGCTTGCTGG
CGACTGTGACCGTTTCATTGTTCAGATCTATGATCACCTTATCGGATGTC
TCCTTTGAATCCCTGGAGCTAAAAAATGACTCCGGCTTGAAGGTGTCCTC
GTCTATAGTCTCGAGTGCCTTTTGCACCTTGGTGTCGAACAGATCGATGG
CCTTCACGGGAGCAGCTGCGGGTGTGGTTGCGGATCGGGAATTGCTTTCC
GAACTTGGACCCCTGGTTTTCCTCTGCGAAATAGACCGCGATTTGTGATG
ATCCCTGGTTCTGCTTTTGCTGTGCGTGCTGCGGGAACTACTCCTGCTGC
TGGAGGAGCTGCGCGAGGTGCTGCGACTGCTACTGCGACTCCTTCTCGAG
TACTTTTTCGACTTCTTGGCCTTTTTCTTCTTCGGTTTTGAAACCTGCCG
GCTGCTCCTGCTGGGCGACTTTGATCTGTGTCGTCTGTCGCGGTCTCGCT
CTCTGTCTCTTTCTCGGTCCCGATCTCTATCCCTCTCTCTGTCGCGATCT
CTGTCACGGCGGTCGCGATCCCTCATGTCGACTGATAACT
BS05853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-PA | 660 | CG11808-RA | 1..660 | 676..17 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-RA | 801 | CG11808-RA | 94..753 | 676..17 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15216300..15216878 | 676..98 | 2895 | 100 | Minus |
2R | 25286936 | 2R | 15216942..15217022 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:22:57 has no hits.
BS05853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:20 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:32 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-PA | 1..660 | 17..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:06 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..760 | 10..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:32 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..760 | 10..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:32 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15216300..15216878 | 98..676 | 100 | -> | Minus |
2R | 15216942..15217029 | 10..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:06 Download gff for
BS05853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11103805..11104383 | 98..676 | 100 | -> | Minus |
arm_2R | 11104447..11104534 | 10..97 | 95 | | Minus |
BS05853.5prime Sequence
690 bp (689 high quality bases) assembled on 2005-12-03
> BS05853.5prime
GAAGTTATCAGTCGACATGAGGGATCGCGACCGCCGTGACAGAGATCGCG
ACAGAGAGAGGGATAGAGATCGGGACCGAGAAAGAGACAGAGAGCGAGAC
CGCGACAGACGACACAGATCAAAGTCGCCCAGCAGGAGCAGCCGGCAGGT
TTCAAAACCGAAGAAGAAAAAGGCCAAGAAGTCGAAAAAGTACTCGAGAA
GGAGTCGCAGTAGCAGTCGCAGCACCTCGCGCAGCTCCTCCAGCAGCAGG
AGTAGTTCCCGCAGCACGCACAGCAAAAGCAGAACCAGGGATCATCACAA
ATCGCGGTCTATTTCGCAGAGGAAAACCAGGGGTCCAAGTTCGGAAAGCA
ATTCCCGATCCGCAACCACACCCGCAGCTGCTCCCGTGAAGGCCATCGAT
CTGTTCGACACCAAGGTGCAAAAGGCACTCGAGACTATAGACGAGGACAC
CTTCAAGCCGGAGTCATTTTTTAGCTCCAGGGATTCAAAGGAGACATCCG
ATAAGGTGATCATAGATCTGAACAATGAAACGGTCACAGTCGCCAGCAAG
CCAGCCACTGCAGTCCGAAACGAAGATGTAATATTCCATCCGAACTTCCT
GGGCGACCCGGATATGAAGGCCGAGAAGTGGCTGCGCAAGCTGTACAATT
ACCGCCAAAAGTACATGCAGGAGTAGAAGCTTTCTAGACC
BS05853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-PA | 660 | CG11808-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-RA | 801 | CG11808-RA | 94..753 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15216300..15216878 | 17..595 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 15216942..15217022 | 596..676 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:15:02 has no hits.
BS05853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:21 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:34 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:08 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..760 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:15 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..760 | 17..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:15 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15216300..15216878 | 17..595 | 100 | -> | Plus |
2R | 15216942..15217029 | 596..683 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:08 Download gff for
BS05853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11103805..11104383 | 17..595 | 100 | -> | Plus |
arm_2R | 11104447..11104534 | 596..683 | 95 | | Plus |
BS05853.complete Sequence
692 bp (692 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635263
> BS05853.complete
GAAGTTATCAGTCGACATGAGGGATCGCGACCGCCGTGACAGAGATCGCG
ACAGAGAGAGGGATAGAGATCGGGACCGAGAAAGAGACAGAGAGCGAGAC
CGCGACAGACGACACAGATCAAAGTCGCCCAGCAGGAGCAGCCGGCAGGT
TTCAAAACCGAAGAAGAAAAAGGCCAAGAAGTCGAAAAAGTACTCGAGAA
GGAGTCGCAGTAGCAGTCGCAGCACCTCGCGCAGCTCCTCCAGCAGCAGG
AGTAGTTCCCGCAGCACGCACAGCAAAAGCAGAACCAGGGATCATCACAA
ATCGCGGTCTATTTCGCAGAGGAAAACCAGGGGTCCAAGTTCGGAAAGCA
ATTCCCGATCCGCAACCACACCCGCAGCTGCTCCCGTGAAGGCCATCGAT
CTGTTCGACACCAAGGTGCAAAAGGCACTCGAGACTATAGACGAGGACAC
CTTCAAGCCGGAGTCATTTTTTAGCTCCAGGGATTCAAAGGAGACATCCG
ATAAGGTGATCATAGATCTGAACAATGAAACGGTCACAGTCGCCAGCAAG
CCAGCCACTGCAGTCCGAAACGAAGATGTAATATTCCATCCGAACTTCCT
GGGCGACCCGGATATGAAGGCCGAGAAGTGGCTGCGCAAGCTGTACAATT
ACCGCCAAAAGTACATGCAGGAGTAGAAGCTTTCTAGACCAT
BS05853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-RA | 660 | CG11808-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-RA | 801 | CG11808-RA | 94..753 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15216300..15216878 | 17..595 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 15216942..15217022 | 596..676 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:08:38 has no hits.
BS05853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:44 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:03:08 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 92..758 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:41 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..753 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:44 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 92..758 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:49 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11808-RA | 94..753 | 17..676 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:49 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15216300..15216878 | 17..595 | 100 | -> | Plus |
2R | 15216942..15217022 | 596..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:41 Download gff for
BS05853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11103805..11104383 | 17..595 | 100 | -> | Plus |
arm_2R | 11104447..11104527 | 596..676 | 100 | | Plus |
BS05853.pep Sequence
Translation from 16 to 675
> BS05853.pep
MRDRDRRDRDRDRERDRDRDRERDRERDRDRRHRSKSPSRSSRQVSKPKK
KKAKKSKKYSRRSRSSSRSTSRSSSSSRSSSRSTHSKSRTRDHHKSRSIS
QRKTRGPSSESNSRSATTPAAAPVKAIDLFDTKVQKALETIDEDTFKPES
FFSSRDSKETSDKVIIDLNNETVTVASKPATAVRNEDVIFHPNFLGDPDM
KAEKWLRKLYNYRQKYMQE*
BS05853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11808-PA | 219 | CG11808-PA | 1..219 | 1..219 | 1108 | 100 | Plus |
CG12877-PC | 991 | CG12877-PC | 200..326 | 1..123 | 213 | 41.5 | Plus |
SF1-PC | 323 | CG5836-PC | 53..217 | 2..144 | 192 | 36.5 | Plus |
SF1-PB | 347 | CG5836-PB | 53..217 | 2..144 | 192 | 36.5 | Plus |
SF1-PA | 787 | CG5836-PA | 53..217 | 2..144 | 192 | 36.5 | Plus |
CG12877-PC | 991 | CG12877-PC | 170..295 | 2..115 | 176 | 34.9 | Plus |
CG12877-PC | 991 | CG12877-PC | 221..350 | 2..131 | 166 | 33.6 | Plus |