Clone Sequence Records
BS05854.3prime Sequence
888 bp (746 high quality bases) assembled on 2005-12-03
> BS05854.3prime
ATGGTCTAGAAAGCTTTCACACCATGTAGTGTCGTATATCAAGATTGCGT
TCCCTTAGCTTCAAATCGATCCACTGCCGGTACAACTTGACGTTTGTGTA
AATTCCAAGAAGTTGCGGGCCATCGCAGCGAGCCGTGCGGGTCAAAAGAC
CGGCCAGGTGGAAACGATCATCGTGACCGGAAAGAGGACACATCAGCGGC
ACAGCGGTCATGTCCACATCACCGCAGACGAAGTCACCCTTGTCGCCGCC
GGCACACAGCAGGCTATCGTTGTGGGCGTGGCGTCGCCCCAAGAGGGACA
ATCGCAACTTGGTCCTGCATTGATCGGGTGGTAGGACGTAGAGTGTCCAA
CGCTTGGGCAGGATTGCAGCTCTACCAAAATCACTCCTCTGCCAACCGGA
CACATAGCACTGGCTGTAGTTGTACATTATTCGCGGAGGCGGCAAGCAAA
TGGGCTGTACATTAGGAGCCAGCTGGAAAGGTTTCTCCTTGTCCACCAGA
AGTATCGCTATGTTGTGGGCCAATGGCATTTGAGTGTAATTGGGATGCAC
TAATGTCTCAACAACCGATCTTTGCTGGTGCGGCTGGGGCTCCAGCTCCA
CGGCGGCATCCCATTCCCCGGCCAACAGACGAACCTTCTCCATTTCCGAA
TTCTGAACGCAGTGCGCGGTGGTGATCACCGCCAGCGGAGTGATAAGTGC
TCCACTGCAGAGATAAGTATCCGACCCGTAGACCGCCACCAACCAGGGAA
ACTCCCCGAACTTGGCCTCTTGCTGTTTATATCCCAGCGGTCGAAGGTAG
TACCAGAGATCATGGCGTCCTCACACGGGCAGCTCATCATCTCTTCTGGA
ATTTTCNGAGTCGGGAGTTTATCGGGGGATATACAGCA
BS05854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-PA | 1068 | CG9377-RA | 263..1068 | 822..17 | 4030 | 100 | Minus |
CG9377-PA | 1068 | CG9377-RA | 207..262 | 877..822 | 236 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-RA | 1191 | CG9377-RA | 278..1152 | 888..15 | 4279 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13359940..13360793 | 15..867 | 4194 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:15:44 has no hits.
BS05854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:23 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-PA | 197..1068 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:35 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-PA | 197..1068 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:30 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 279..1158 | 7..887 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:01 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 279..1158 | 7..887 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:01 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13359934..13360800 | 7..875 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:30 Download gff for
BS05854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13359934..13360800 | 7..875 | 98 | | Plus |
BS05854.5prime Sequence
950 bp (855 high quality bases) assembled on 2005-12-03
> BS05854.5prime
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCANGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCC
GGCGGCGACAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGT
GCCGCTGATGTGTCCCTCTTCCGGTCACGATGATCGTTTTCACCTGGNCG
BS05854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-PA | 1068 | CG9377-RA | 1..899 | 17..915 | 4476 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-RA | 1191 | CG9377-RA | 83..1013 | 17..947 | 4584 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13360079..13360793 | 947..233 | 3504 | 99.3 | Minus |
2L | 23513712 | 2L | 13361268..13361483 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:43:50 has no hits.
BS05854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:23 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:36 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:43 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 73..1016 | 7..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:52 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 73..1016 | 7..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:52 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13360076..13360793 | 233..950 | 99 | <- | Minus |
2L | 13361268..13361493 | 7..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:43 Download gff for
BS05854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13361268..13361493 | 7..232 | 98 | | Minus |
arm_2L | 13360076..13360793 | 233..950 | 99 | <- | Minus |
BS05854.complete Sequence
1100 bp (1100 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635264
> BS05854.complete
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCAGGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCC
GGCGGCGACAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGT
GCCGCTGATGTGTCCTCTTTCCGGTCACGATGATCGTTTCCACCTGGCCG
GTCTTTTGACCCGCACGGCTCGCTGCGATGGCCCGCAACTTCTTGGAATT
TACACAAACGTCAAGTTGTACCGGCAGTGGATCGATTTGAAGCTAAGGGA
ACGCAATCTTGATATACGACACTACATGGTGTGAAAGCTTTCTAGACCAT
BS05854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-RA | 1068 | CG9377-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-RA | 1191 | CG9377-RA | 83..1152 | 17..1086 | 5350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13359940..13360793 | 1086..233 | 4270 | 100 | Minus |
2L | 23513712 | 2L | 13361268..13361483 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:45:37 has no hits.
BS05854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:23 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 1..1068 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:43 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 35..1120 | 7..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:15 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 83..1149 | 17..1083 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:23 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 35..1120 | 7..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:20 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9377-RA | 83..1149 | 17..1083 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:20 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13361268..13361483 | 17..232 | 100 | | Minus |
2L | 13359943..13360793 | 233..1083 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:15 Download gff for
BS05854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13359943..13360793 | 233..1083 | 100 | <- | Minus |
arm_2L | 13361268..13361483 | 17..232 | 100 | | Minus |
BS05854.pep Sequence
Translation from 16 to 1083
> BS05854.pep
MCFYRIVVICLLGSLVPSIAASKVCGPEKHCVPYEQCNEGLMVDGKFYPD
RSRTTLDENCHYMEKCCNIPDKLPTPKIPEEMMSCPCGGRHDLWYYLRPL
GYKQQEAKFGEFPWLVAVYGSDTYLCSGALITPLAVITTAHCVQNSEMEK
VRLLAGEWDAAVELEPQPHQQRSVVETLVHPNYTQMPLAHNIAILLVDKE
KPFQLAPNVQPICLPPPRIMYNYSQCYVSGWQRSDFGRAAILPKRWTLYV
LPPDQCRTKLRLSLLGRRHAHNDSLLCAGGDKGDFVCGDVDMTAVPLMCP
LSGHDDRFHLAGLLTRTARCDGPQLLGIYTNVKLYRQWIDLKLRERNLDI
RHYMV*
BS05854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9377-PA | 355 | CG9377-PA | 1..355 | 1..355 | 1958 | 100 | Plus |
CG5390-PB | 406 | CG5390-PB | 71..404 | 25..353 | 543 | 35.6 | Plus |
CG5390-PA | 406 | CG5390-PA | 71..404 | 25..353 | 543 | 35.6 | Plus |
CG8738-PA | 459 | CG8738-PA | 117..445 | 23..340 | 477 | 33.8 | Plus |
CG8586-PC | 444 | CG8586-PC | 105..435 | 25..344 | 440 | 31.5 | Plus |