Clone BS05854 Report

Search the DGRC for BS05854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG9377-RA
Protein status:BS05854.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05854.3prime Sequence

888 bp (746 high quality bases) assembled on 2005-12-03

> BS05854.3prime
ATGGTCTAGAAAGCTTTCACACCATGTAGTGTCGTATATCAAGATTGCGT
TCCCTTAGCTTCAAATCGATCCACTGCCGGTACAACTTGACGTTTGTGTA
AATTCCAAGAAGTTGCGGGCCATCGCAGCGAGCCGTGCGGGTCAAAAGAC
CGGCCAGGTGGAAACGATCATCGTGACCGGAAAGAGGACACATCAGCGGC
ACAGCGGTCATGTCCACATCACCGCAGACGAAGTCACCCTTGTCGCCGCC
GGCACACAGCAGGCTATCGTTGTGGGCGTGGCGTCGCCCCAAGAGGGACA
ATCGCAACTTGGTCCTGCATTGATCGGGTGGTAGGACGTAGAGTGTCCAA
CGCTTGGGCAGGATTGCAGCTCTACCAAAATCACTCCTCTGCCAACCGGA
CACATAGCACTGGCTGTAGTTGTACATTATTCGCGGAGGCGGCAAGCAAA
TGGGCTGTACATTAGGAGCCAGCTGGAAAGGTTTCTCCTTGTCCACCAGA
AGTATCGCTATGTTGTGGGCCAATGGCATTTGAGTGTAATTGGGATGCAC
TAATGTCTCAACAACCGATCTTTGCTGGTGCGGCTGGGGCTCCAGCTCCA
CGGCGGCATCCCATTCCCCGGCCAACAGACGAACCTTCTCCATTTCCGAA
TTCTGAACGCAGTGCGCGGTGGTGATCACCGCCAGCGGAGTGATAAGTGC
TCCACTGCAGAGATAAGTATCCGACCCGTAGACCGCCACCAACCAGGGAA
ACTCCCCGAACTTGGCCTCTTGCTGTTTATATCCCAGCGGTCGAAGGTAG
TACCAGAGATCATGGCGTCCTCACACGGGCAGCTCATCATCTCTTCTGGA
ATTTTCNGAGTCGGGAGTTTATCGGGGGATATACAGCA

BS05854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-PA 1068 CG9377-RA 263..1068 822..17 4030 100 Minus
CG9377-PA 1068 CG9377-RA 207..262 877..822 236 96.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-RA 1191 CG9377-RA 278..1152 888..15 4279 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13359940..13360793 15..867 4194 99.6 Plus
Blast to na_te.dros performed on 2015-01-30 15:15:44 has no hits.

BS05854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:23 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-PA 197..1068 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:35 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-PA 197..1068 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:30 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 279..1158 7..887 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:01 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 279..1158 7..887 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:01 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13359934..13360800 7..875 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:30 Download gff for BS05854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13359934..13360800 7..875 98   Plus

BS05854.5prime Sequence

950 bp (855 high quality bases) assembled on 2005-12-03

> BS05854.5prime
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCANGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCC
GGCGGCGACAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGT
GCCGCTGATGTGTCCCTCTTCCGGTCACGATGATCGTTTTCACCTGGNCG

BS05854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-PA 1068 CG9377-RA 1..899 17..915 4476 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-RA 1191 CG9377-RA 83..1013 17..947 4584 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13360079..13360793 947..233 3504 99.3 Minus
2L 23513712 2L 13361268..13361483 232..17 1080 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:43:50 has no hits.

BS05854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:23 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:36 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:20:43 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 73..1016 7..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:33:52 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 73..1016 7..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:33:52 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13360076..13360793 233..950 99 <- Minus
2L 13361268..13361493 7..232 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:20:43 Download gff for BS05854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13361268..13361493 7..232 98   Minus
arm_2L 13360076..13360793 233..950 99 <- Minus

BS05854.complete Sequence

1100 bp (1100 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635264

> BS05854.complete
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCAGGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCC
GGCGGCGACAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGT
GCCGCTGATGTGTCCTCTTTCCGGTCACGATGATCGTTTCCACCTGGCCG
GTCTTTTGACCCGCACGGCTCGCTGCGATGGCCCGCAACTTCTTGGAATT
TACACAAACGTCAAGTTGTACCGGCAGTGGATCGATTTGAAGCTAAGGGA
ACGCAATCTTGATATACGACACTACATGGTGTGAAAGCTTTCTAGACCAT

BS05854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-RA 1068 CG9377-PA 1..1068 17..1084 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-RA 1191 CG9377-RA 83..1152 17..1086 5350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13359940..13360793 1086..233 4270 100 Minus
2L 23513712 2L 13361268..13361483 232..17 1080 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:45:37 has no hits.

BS05854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:23 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 1..1068 17..1084 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:43 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 35..1120 7..1094 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:15 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 83..1149 17..1083 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:23 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 35..1120 7..1094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:20 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
CG9377-RA 83..1149 17..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:20 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13361268..13361483 17..232 100   Minus
2L 13359943..13360793 233..1083 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:15 Download gff for BS05854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13359943..13360793 233..1083 100 <- Minus
arm_2L 13361268..13361483 17..232 100   Minus

BS05854.pep Sequence

Translation from 16 to 1083

> BS05854.pep
MCFYRIVVICLLGSLVPSIAASKVCGPEKHCVPYEQCNEGLMVDGKFYPD
RSRTTLDENCHYMEKCCNIPDKLPTPKIPEEMMSCPCGGRHDLWYYLRPL
GYKQQEAKFGEFPWLVAVYGSDTYLCSGALITPLAVITTAHCVQNSEMEK
VRLLAGEWDAAVELEPQPHQQRSVVETLVHPNYTQMPLAHNIAILLVDKE
KPFQLAPNVQPICLPPPRIMYNYSQCYVSGWQRSDFGRAAILPKRWTLYV
LPPDQCRTKLRLSLLGRRHAHNDSLLCAGGDKGDFVCGDVDMTAVPLMCP
LSGHDDRFHLAGLLTRTARCDGPQLLGIYTNVKLYRQWIDLKLRERNLDI
RHYMV*

BS05854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9377-PA 355 CG9377-PA 1..355 1..355 1958 100 Plus
CG5390-PB 406 CG5390-PB 71..404 25..353 543 35.6 Plus
CG5390-PA 406 CG5390-PA 71..404 25..353 543 35.6 Plus
CG8738-PA 459 CG8738-PA 117..445 23..340 477 33.8 Plus
CG8586-PC 444 CG8586-PC 105..435 25..344 440 31.5 Plus