Clone BS05856 Report

Search the DGRC for BS05856

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:56
Vector:pDNR-Dual
Associated Gene/TranscripteIF6-RA
Protein status:BS05856.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05856.3prime Sequence

768 bp (767 high quality bases) assembled on 2005-12-03

> BS05856.3prime
ATGGTCTAGAAAGCTTTTAGGACATGTCCTCGATGAGGGCCGCACGCAGC
TTGGTCGTCACTGTGGCGGGCTGTGCCTGGTTAAGCTTGAAGACGCTCTC
GATCACGGAGATCTCTGTGGCCGTGGTGTTCATGCCCACGAAGGAGAGCC
AGTCGTTGACGACCATGCCGGCGGCGAGTACTTCGCTGCCCCGGTTCACT
GTTCCGGCCACGAGGGGAACCTGCAGCAGGGACGACAGTTCGTCCTGGTC
CTGAATGCTCGTCTTGGGATGCACCATGCCGCCCTGGTTGCTCAGCACGG
CGTAAGAGCCCACCAGTGAGTTGTCGGCAATGGTCTGGCGGAAGACCTCT
ACTTTGAGCACGTCCGCGATGATCTCCTCGGTCTCCTTGTCCAGATCCGG
GTGCACCAGGGCCACATAATCATTGCAGGCGATAACGTTGCCCAGCGCGG
ACAGGCGCTCCTCCACACGATAAATCTTCACGGCGTCTGGCAGGCTGTTA
CGCAGGTGTTGCAGCTCCTCGTCGGTGGTGGAGTTGGGCACCAGCAGGCC
GTTGCGGTTGCCCACGGTGAGGCGGCCGATGATCCGGCAGCCGCCCACAT
TCGCATGCACCACCGGGATGGTGTCGCCCAGCTCCGCCTCGAAGGCGCTG
TAGAAGGTCTCGGATCCACCGATGGCCACCAGGCAGTATGTGTTGGTTAG
TTTAGTGAAGACGCCGATGTCGTCGTTGTTCTCGAATTGGACGCGTAGAG
CCATGTCGACTGATAACT

BS05856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17611-PA 738 eIF6-RA 1..738 754..17 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
eIF6-RA 1056 CG17611-RA 230..967 754..17 3690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23849335..23850072 17..754 3690 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:20:58 has no hits.

BS05856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:27 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:41 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17611-PA 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:59 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 222..978 9..762 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:34 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 222..978 9..762 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:34 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23849324..23850080 9..762 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:59 Download gff for BS05856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19736847..19737603 9..762 98   Plus

BS05856.5prime Sequence

768 bp (749 high quality bases) assembled on 2005-12-03

> BS05856.5prime
GAAGTTATCAGTCGACATGGCTCTACGCGTCCAATTCGAGAACAACGACG
ACATCGGCGTCTTCACTAAACTAACCAACACATACTGCCTGGTGGCCATC
GGTGGATCCGAGACCTTCTACAGCGCCTTCGAGGCGGAGCTGGGCGACAC
CATCCCGGTGGTGCATGCGAATGTGGGCGGCTGCCGGATCATCGGCCGCC
TCACCGTGGGCAACCGCAACGGCCTGCTGGTGCCCAACTCCACCACCGAC
GAGGAGCTGCAACACCTGCGTAACAGCCTGCCAGACGCCGTGAAGATTTA
TCGTGTGGAGGAGCGCCTGTCCGCGCTGGGCAACGTTATCGCCTGCAATG
ATTATGTGGCCCTGGTGCACCCGGATCTGGACAAGGAGACCGAGGAGATC
ATCGCGGACGTGCTCAAAGTAGAGGTCTTCCGCCAGACCATTGCCGACAA
CTCACTGGTGGGCTCTTACGCCGTGCTGAGCAACCAGGGCGGCATGGTGC
ATCCCAAGACGAGCATTCAGGACCAGGACGAACTGTCGTCCCTGCTGCAG
GTTCCCCTCGTGGCCGGAACAGTGAACCGGGGCAGCGAAGTACTCGCCGC
CGGCATGGTCGTCAACGACTGGCTCTCCTTCGTGGGCATGAACACCACGG
CCACAGAGATCTCCGTGATCGAGAGCGTCTTCAAGCTTAACCAGGCACAG
CCCGCCACAGTGACGACCAAGCTGCGTGCGGCCCTCATCGAGGACATGTC
CTAAAAGCTTTCTAGACC

BS05856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17611-PA 738 eIF6-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
eIF6-RA 1056 CG17611-RA 230..967 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23849335..23850072 754..17 3690 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:37:22 has no hits.

BS05856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:28 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:42 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17611-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:29 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 222..978 9..762 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:43 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 222..978 9..762 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:43 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23849324..23850080 9..762 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:29 Download gff for BS05856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19736847..19737603 9..762 98   Minus

BS05856.complete Sequence

770 bp (770 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635265

> BS05856.complete
GAAGTTATCAGTCGACATGGCTCTACGCGTCCAATTCGAGAACAACGACG
ACATCGGCGTCTTCACTAAACTAACCAACACATACTGCCTGGTGGCCATC
GGTGGATCCGAGACCTTCTACAGCGCCTTCGAGGCGGAGCTGGGCGACAC
CATCCCGGTGGTGCATGCGAATGTGGGCGGCTGCCGGATCATCGGCCGCC
TCACCGTGGGCAACCGCAACGGCCTGCTGGTGCCCAACTCCACCACCGAC
GAGGAGCTGCAACACCTGCGTAACAGCCTGCCAGACGCCGTGAAGATTTA
TCGTGTGGAGGAGCGCCTGTCCGCGCTGGGCAACGTTATCGCCTGCAATG
ATTATGTGGCCCTGGTGCACCCGGATCTGGACAAGGAGACCGAGGAGATC
ATCGCGGACGTGCTCAAAGTAGAGGTCTTCCGCCAGACCATTGCCGACAA
CTCACTGGTGGGCTCTTACGCCGTGCTGAGCAACCAGGGCGGCATGGTGC
ATCCCAAGACGAGCATTCAGGACCAGGACGAACTGTCGTCCCTGCTGCAG
GTTCCCCTCGTGGCCGGAACAGTGAACCGGGGCAGCGAAGTACTCGCCGC
CGGCATGGTCGTCAACGACTGGCTCTCCTTCGTGGGCATGAACACCACGG
CCACAGAGATCTCCGTGATCGAGAGCGTCTTCAAGCTTAACCAGGCACAG
CCCGCCACAGTGACGACCAAGCTGCGTGCGGCCCTCATCGAGGACATGTC
CTAAAAGCTTTCTAGACCAT

BS05856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
eIF6-RA 738 CG17611-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
eIF6-RA 1056 CG17611-RA 230..967 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23849335..23850072 754..17 3690 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:11 has no hits.

BS05856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:24 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:44 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 220..976 9..762 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:48 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 230..965 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:24 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 220..976 9..762 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:01 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
eIF6-RA 230..965 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:01 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23849337..23850072 17..752 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:48 Download gff for BS05856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19736860..19737595 17..752 100   Minus

BS05856.pep Sequence

Translation from 16 to 753

> BS05856.pep
MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVH
ANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEER
LSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGS
YAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVN
DWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIEDMS*

BS05856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
eIF6-PA 245 CG17611-PA 1..245 1..245 1228 100 Plus