Clone Sequence Records
BS05856.3prime Sequence
768 bp (767 high quality bases) assembled on 2005-12-03
> BS05856.3prime
ATGGTCTAGAAAGCTTTTAGGACATGTCCTCGATGAGGGCCGCACGCAGC
TTGGTCGTCACTGTGGCGGGCTGTGCCTGGTTAAGCTTGAAGACGCTCTC
GATCACGGAGATCTCTGTGGCCGTGGTGTTCATGCCCACGAAGGAGAGCC
AGTCGTTGACGACCATGCCGGCGGCGAGTACTTCGCTGCCCCGGTTCACT
GTTCCGGCCACGAGGGGAACCTGCAGCAGGGACGACAGTTCGTCCTGGTC
CTGAATGCTCGTCTTGGGATGCACCATGCCGCCCTGGTTGCTCAGCACGG
CGTAAGAGCCCACCAGTGAGTTGTCGGCAATGGTCTGGCGGAAGACCTCT
ACTTTGAGCACGTCCGCGATGATCTCCTCGGTCTCCTTGTCCAGATCCGG
GTGCACCAGGGCCACATAATCATTGCAGGCGATAACGTTGCCCAGCGCGG
ACAGGCGCTCCTCCACACGATAAATCTTCACGGCGTCTGGCAGGCTGTTA
CGCAGGTGTTGCAGCTCCTCGTCGGTGGTGGAGTTGGGCACCAGCAGGCC
GTTGCGGTTGCCCACGGTGAGGCGGCCGATGATCCGGCAGCCGCCCACAT
TCGCATGCACCACCGGGATGGTGTCGCCCAGCTCCGCCTCGAAGGCGCTG
TAGAAGGTCTCGGATCCACCGATGGCCACCAGGCAGTATGTGTTGGTTAG
TTTAGTGAAGACGCCGATGTCGTCGTTGTTCTCGAATTGGACGCGTAGAG
CCATGTCGACTGATAACT
BS05856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17611-PA | 738 | eIF6-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF6-RA | 1056 | CG17611-RA | 230..967 | 754..17 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23849335..23850072 | 17..754 | 3690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:20:58 has no hits.
BS05856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:27 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:41 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17611-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:51:59 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 222..978 | 9..762 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:34 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 222..978 | 9..762 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:34 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23849324..23850080 | 9..762 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:51:59 Download gff for
BS05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19736847..19737603 | 9..762 | 98 | | Plus |
BS05856.5prime Sequence
768 bp (749 high quality bases) assembled on 2005-12-03
> BS05856.5prime
GAAGTTATCAGTCGACATGGCTCTACGCGTCCAATTCGAGAACAACGACG
ACATCGGCGTCTTCACTAAACTAACCAACACATACTGCCTGGTGGCCATC
GGTGGATCCGAGACCTTCTACAGCGCCTTCGAGGCGGAGCTGGGCGACAC
CATCCCGGTGGTGCATGCGAATGTGGGCGGCTGCCGGATCATCGGCCGCC
TCACCGTGGGCAACCGCAACGGCCTGCTGGTGCCCAACTCCACCACCGAC
GAGGAGCTGCAACACCTGCGTAACAGCCTGCCAGACGCCGTGAAGATTTA
TCGTGTGGAGGAGCGCCTGTCCGCGCTGGGCAACGTTATCGCCTGCAATG
ATTATGTGGCCCTGGTGCACCCGGATCTGGACAAGGAGACCGAGGAGATC
ATCGCGGACGTGCTCAAAGTAGAGGTCTTCCGCCAGACCATTGCCGACAA
CTCACTGGTGGGCTCTTACGCCGTGCTGAGCAACCAGGGCGGCATGGTGC
ATCCCAAGACGAGCATTCAGGACCAGGACGAACTGTCGTCCCTGCTGCAG
GTTCCCCTCGTGGCCGGAACAGTGAACCGGGGCAGCGAAGTACTCGCCGC
CGGCATGGTCGTCAACGACTGGCTCTCCTTCGTGGGCATGAACACCACGG
CCACAGAGATCTCCGTGATCGAGAGCGTCTTCAAGCTTAACCAGGCACAG
CCCGCCACAGTGACGACCAAGCTGCGTGCGGCCCTCATCGAGGACATGTC
CTAAAAGCTTTCTAGACC
BS05856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17611-PA | 738 | eIF6-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF6-RA | 1056 | CG17611-RA | 230..967 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23849335..23850072 | 754..17 | 3690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:37:22 has no hits.
BS05856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:28 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:42 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17611-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:29 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 222..978 | 9..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:43 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 222..978 | 9..762 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:43 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23849324..23850080 | 9..762 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:29 Download gff for
BS05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19736847..19737603 | 9..762 | 98 | | Minus |
BS05856.complete Sequence
770 bp (770 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635265
> BS05856.complete
GAAGTTATCAGTCGACATGGCTCTACGCGTCCAATTCGAGAACAACGACG
ACATCGGCGTCTTCACTAAACTAACCAACACATACTGCCTGGTGGCCATC
GGTGGATCCGAGACCTTCTACAGCGCCTTCGAGGCGGAGCTGGGCGACAC
CATCCCGGTGGTGCATGCGAATGTGGGCGGCTGCCGGATCATCGGCCGCC
TCACCGTGGGCAACCGCAACGGCCTGCTGGTGCCCAACTCCACCACCGAC
GAGGAGCTGCAACACCTGCGTAACAGCCTGCCAGACGCCGTGAAGATTTA
TCGTGTGGAGGAGCGCCTGTCCGCGCTGGGCAACGTTATCGCCTGCAATG
ATTATGTGGCCCTGGTGCACCCGGATCTGGACAAGGAGACCGAGGAGATC
ATCGCGGACGTGCTCAAAGTAGAGGTCTTCCGCCAGACCATTGCCGACAA
CTCACTGGTGGGCTCTTACGCCGTGCTGAGCAACCAGGGCGGCATGGTGC
ATCCCAAGACGAGCATTCAGGACCAGGACGAACTGTCGTCCCTGCTGCAG
GTTCCCCTCGTGGCCGGAACAGTGAACCGGGGCAGCGAAGTACTCGCCGC
CGGCATGGTCGTCAACGACTGGCTCTCCTTCGTGGGCATGAACACCACGG
CCACAGAGATCTCCGTGATCGAGAGCGTCTTCAAGCTTAACCAGGCACAG
CCCGCCACAGTGACGACCAAGCTGCGTGCGGCCCTCATCGAGGACATGTC
CTAAAAGCTTTCTAGACCAT
BS05856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF6-RA | 738 | CG17611-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF6-RA | 1056 | CG17611-RA | 230..967 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23849335..23850072 | 754..17 | 3690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:11 has no hits.
BS05856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:24 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:44 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 220..976 | 9..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:48 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 230..965 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:24 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 220..976 | 9..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:01 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF6-RA | 230..965 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:01 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23849337..23850072 | 17..752 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:48 Download gff for
BS05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19736860..19737595 | 17..752 | 100 | | Minus |
BS05856.pep Sequence
Translation from 16 to 753
> BS05856.pep
MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVH
ANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEER
LSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGS
YAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVN
DWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIEDMS*
BS05856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF6-PA | 245 | CG17611-PA | 1..245 | 1..245 | 1228 | 100 | Plus |