Clone Sequence Records
BS05857.3prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-03
> BS05857.3prime
ATGGTCTAGAAAGCTTTCAGCAGTACATGTTGAGCTGGCGGAAGAAGTAG
TGGAAAATGAGCAGAACGCAGAAGGAGCTGGTCACGGGCAGACCAGCCGC
CTTGATCCATCCGAGGATGTTGAAGTCGTCCGGGTAGAACTCGAACTGCT
CCGTGGGTATCTCGCCGCAGTTGGAGATCACCACGGGTTCCACGGGGAAG
TCATCCGTATCGGTTTTTACATCCTCAATGGCATAGATGGTGTCCATTCC
CTCCAGCACCTTGCCGAAAACGGTGTGCTTTCCGTCCAGCCACTTGGCGC
CCACGGTGGTCACATAAAACTGGCAGCCATTGGTGTCCGGGCCCCGATTG
GCCATGCCCAAGTAACCGGGTCTGTTGTGCTCCACCGCCAGAGCCTTATC
CTCGTCCGGAAAGTAGTCCCCATAGATGCTAATGGAGCCAGTTCCGTCGC
CGTTCACAATGTCGCCGCCTTGGACGAGAAAGCGGTCCACCACGCGATGG
AATCGCGAGCCCACGTAGCTGGTCCCGTTGATGCCGCGCAAGCAAATGTG
CCGGAAGTTGGCCACCGTCTTGGGAGCCAGCTTCCCGAACAGTCCAAACG
TGATCCTGCCCACCGGCTTCTTGTTGTGCTTCACATCCATGTAGATCCGA
GACGTGACCGTGAAGCTCAGACCACTGGCCACGGCCAGAAAGGCGCTGCA
CAGGATTATCCGATTGAGCAATGACTTCATGTCGACTGATAACT
BS05857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3966-PA | 714 | ninaA-RA | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..774 | 731..17 | 3575 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 219..731 | 2565 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6071..6274 | 17..220 | 1020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 731..219 | 2565 | 100 | Minus |
2L | 23513712 | 2L | 877970..878173 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:16:33 has no hits.
BS05857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:29 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:44 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3966-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:42 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..785 | 6..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:07 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..785 | 6..731 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:07 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877361..877871 | 221..731 | 100 | -> | Minus |
2L | 877970..878184 | 6..220 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:42 Download gff for
BS05857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877361..877871 | 221..731 | 100 | -> | Minus |
arm_2L | 877970..878184 | 6..220 | 97 | | Minus |
BS05857.5prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-03
> BS05857.5prime
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCTGAAAGCTTTCTAGACC
BS05857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3966-PA | 714 | ninaA-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..774 | 16..730 | 3575 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 528..16 | 2565 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6071..6274 | 730..527 | 1020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 16..528 | 2565 | 100 | Plus |
2L | 23513712 | 2L | 877970..878173 | 527..730 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:24:43 has no hits.
BS05857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:30 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:45 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3966-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:43 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..785 | 16..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:08 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..785 | 16..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:08 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877361..877871 | 16..526 | 100 | -> | Plus |
2L | 877970..878184 | 527..741 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:43 Download gff for
BS05857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877970..878184 | 527..741 | 97 | | Plus |
arm_2L | 877361..877871 | 16..526 | 100 | -> | Plus |
BS05857.complete Sequence
746 bp (746 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635266
> BS05857.complete
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCTGAAAGCTTTCTAGACCAT
BS05857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 714 | CG3966-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..774 | 16..730 | 3575 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 528..16 | 2565 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6071..6274 | 730..527 | 1020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 16..528 | 2565 | 100 | Plus |
2L | 23513712 | 2L | 877970..878173 | 527..730 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:24:09 has no hits.
BS05857.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:25 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:46 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 69..794 | 16..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:03 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 61..773 | 17..729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:26 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 69..794 | 16..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:42 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 61..773 | 17..729 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:42 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877362..877871 | 17..526 | 100 | -> | Plus |
2L | 877970..878172 | 527..729 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:03 Download gff for
BS05857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877362..877871 | 17..526 | 100 | -> | Plus |
arm_2L | 877970..878172 | 527..729 | 100 | | Plus |
BS05857.pep Sequence
Translation from 16 to 729
> BS05857.pep
MKSLLNRIILCSAFLAVASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGK
LAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSI
SIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDG
KHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEIPTEQFEFYP
DDFNILGWIKAAGLPVTSSFCVLLIFHYFFRQLNMYC*
BS05857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-PA | 237 | CG3966-PA | 1..237 | 1..237 | 1269 | 100 | Plus |
CG2852-PD | 205 | CG2852-PD | 27..194 | 25..195 | 446 | 49.1 | Plus |
CG2852-PA | 205 | CG2852-PA | 27..194 | 25..195 | 446 | 49.1 | Plus |
CG17266-PB | 183 | CG17266-PB | 19..183 | 29..191 | 375 | 44.3 | Plus |
CG17266-PA | 183 | CG17266-PA | 19..183 | 29..191 | 375 | 44.3 | Plus |