Clone BS05857 Report

Search the DGRC for BS05857

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptninaA-RA
Protein status:BS05857.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05857.3prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-03

> BS05857.3prime
ATGGTCTAGAAAGCTTTCAGCAGTACATGTTGAGCTGGCGGAAGAAGTAG
TGGAAAATGAGCAGAACGCAGAAGGAGCTGGTCACGGGCAGACCAGCCGC
CTTGATCCATCCGAGGATGTTGAAGTCGTCCGGGTAGAACTCGAACTGCT
CCGTGGGTATCTCGCCGCAGTTGGAGATCACCACGGGTTCCACGGGGAAG
TCATCCGTATCGGTTTTTACATCCTCAATGGCATAGATGGTGTCCATTCC
CTCCAGCACCTTGCCGAAAACGGTGTGCTTTCCGTCCAGCCACTTGGCGC
CCACGGTGGTCACATAAAACTGGCAGCCATTGGTGTCCGGGCCCCGATTG
GCCATGCCCAAGTAACCGGGTCTGTTGTGCTCCACCGCCAGAGCCTTATC
CTCGTCCGGAAAGTAGTCCCCATAGATGCTAATGGAGCCAGTTCCGTCGC
CGTTCACAATGTCGCCGCCTTGGACGAGAAAGCGGTCCACCACGCGATGG
AATCGCGAGCCCACGTAGCTGGTCCCGTTGATGCCGCGCAAGCAAATGTG
CCGGAAGTTGGCCACCGTCTTGGGAGCCAGCTTCCCGAACAGTCCAAACG
TGATCCTGCCCACCGGCTTCTTGTTGTGCTTCACATCCATGTAGATCCGA
GACGTGACCGTGAAGCTCAGACCACTGGCCACGGCCAGAAAGGCGCTGCA
CAGGATTATCCGATTGAGCAATGACTTCATGTCGACTGATAACT

BS05857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3966-PA 714 ninaA-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..774 731..17 3575 100 Minus
CG15824-RC 7072 CG15824-RC 6371..6883 219..731 2565 100 Plus
CG15824-RC 7072 CG15824-RC 6071..6274 17..220 1020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 731..219 2565 100 Minus
2L 23513712 2L 877970..878173 220..17 1020 100 Minus
Blast to na_te.dros performed on 2015-01-30 15:16:33 has no hits.

BS05857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:29 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:44 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3966-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:11:42 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..785 6..731 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:07 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..785 6..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:07 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 877361..877871 221..731 100 -> Minus
2L 877970..878184 6..220 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:11:42 Download gff for BS05857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877361..877871 221..731 100 -> Minus
arm_2L 877970..878184 6..220 97   Minus

BS05857.5prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-03

> BS05857.5prime
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCTGAAAGCTTTCTAGACC

BS05857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3966-PA 714 ninaA-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..774 16..730 3575 100 Plus
CG15824-RC 7072 CG15824-RC 6371..6883 528..16 2565 100 Minus
CG15824-RC 7072 CG15824-RC 6071..6274 730..527 1020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 16..528 2565 100 Plus
2L 23513712 2L 877970..878173 527..730 1020 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:24:43 has no hits.

BS05857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:30 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:45 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3966-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:43 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..785 16..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:08 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..785 16..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:08 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 877361..877871 16..526 100 -> Plus
2L 877970..878184 527..741 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:43 Download gff for BS05857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877970..878184 527..741 97   Plus
arm_2L 877361..877871 16..526 100 -> Plus

BS05857.complete Sequence

746 bp (746 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635266

> BS05857.complete
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCTGAAAGCTTTCTAGACCAT

BS05857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 714 CG3966-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..774 16..730 3575 100 Plus
CG15824-RC 7072 CG15824-RC 6371..6883 528..16 2565 100 Minus
CG15824-RC 7072 CG15824-RC 6071..6274 730..527 1020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 16..528 2565 100 Plus
2L 23513712 2L 877970..878173 527..730 1020 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:24:09 has no hits.

BS05857.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:25 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:46 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 69..794 16..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:03 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 61..773 17..729 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:26 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 69..794 16..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:42 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 61..773 17..729 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:42 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 877362..877871 17..526 100 -> Plus
2L 877970..878172 527..729 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:03 Download gff for BS05857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877362..877871 17..526 100 -> Plus
arm_2L 877970..878172 527..729 100   Plus

BS05857.pep Sequence

Translation from 16 to 729

> BS05857.pep
MKSLLNRIILCSAFLAVASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGK
LAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSI
SIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDG
KHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEIPTEQFEFYP
DDFNILGWIKAAGLPVTSSFCVLLIFHYFFRQLNMYC*

BS05857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-PA 237 CG3966-PA 1..237 1..237 1269 100 Plus
CG2852-PD 205 CG2852-PD 27..194 25..195 446 49.1 Plus
CG2852-PA 205 CG2852-PA 27..194 25..195 446 49.1 Plus
CG17266-PB 183 CG17266-PB 19..183 29..191 375 44.3 Plus
CG17266-PA 183 CG17266-PA 19..183 29..191 375 44.3 Plus