Clone BS05858 Report

Search the DGRC for BS05858

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG4891-RA
Protein status:BS05858.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05858.3prime Sequence

750 bp (749 high quality bases) assembled on 2005-12-03

> BS05858.3prime
ATGGTCTAGAAAGCTTTTAATATACCAATAATCCAAAAATATATTTAATG
TCTGAAAAATAAATAACGAAAATCCATGAAATAAGTGCACCTAACCATGA
TGACCTTAAGCTAGCCCCACTACTTGCGTTGACGGGCATGGCATTATCAA
CCCGGGGTAGCCTTTTGCTGACCTCGCACTTGTGGATCATGGCTCTGCCC
ATGCTGTCGCCTGCGAAGGACCTTAGTTGCCTGGCAACCTCAAGTCCGCA
CAACAAGGCTGCCCTCGTATAGTAACAGTCGAGAACATCGTTGAATATGT
GGCACACCTTGCTGGCATTCCTGCGTTCGTACCAATCAGCCGGTGCCTCG
CACTCGATCATGTCCGTCCGGAGTTCCTTGAGGCAGTTGTGCGACTCCTG
GAGTCCAGTGCATCGCTTCCTGTTGCTGCCATCGCCACCAACGCAGACCT
CCGATTGGAAGTAGCTCAGTCCATCAGCTAGTCTTCCGTATATGTTATCC
GGTGCCAAGACACAATTGCGCATGGAGTTCCGAATATTGTCCAGCACATC
GGTGATCTCGGCGCAGGACTCGGTTAGTGATGGCTGCGCCAGGAGCAGGA
CAATCCTCTCAGGACTCACCACATAGAGACGCGCCAGTTGCATCAACACG
GGATTATCGTCGCAAAGGCGTCCTGCTTTCGATCCAACTACGCGTTCACA
TCCGGCCGTTCCGCCAGACAATCCTGCCACTGATGCCTTTATTTCGTAGC

BS05858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-PA 909 CG4891-RA 176..909 750..17 3670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-RA 948 CG4891-RA 215..948 750..17 3670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16095211..16095946 750..15 3680 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:28:13 has no hits.

BS05858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:31 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-PA 176..909 17..750 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:46 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-PA 176..909 17..750 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:07 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 215..948 17..750 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:11 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 215..948 17..750 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:11 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16095211..16095947 14..750 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:07 Download gff for BS05858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16095211..16095947 14..750 99 <- Minus

BS05858.5prime Sequence

910 bp (820 high quality bases) assembled on 2005-12-03

> BS05858.5prime
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGNTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAATAT
ATTTTTGGAT

BS05858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-PA 909 CG4891-RA 1..881 17..897 4386 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-RA 948 CG4891-RA 40..934 17..910 4439 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16095036..16095930 17..910 4414 99.8 Plus
Blast to na_te.dros performed 2015-02-12 13:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1553..1591 31..71 119 80.5 Plus

BS05858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:32 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-PA 1..895 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:48 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-PA 1..895 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:08 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 40..934 17..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:08 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 40..934 17..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:08 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16095036..16095930 17..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:08 Download gff for BS05858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16095036..16095930 17..910 99   Plus

BS05858.complete Sequence

941 bp (941 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635267

> BS05858.complete
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGTTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAAATA
TATTTTTGGATTATTGGTATATTAAAAGCTTTCTAGACCAT

BS05858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-RA 909 CG4891-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-RA 948 CG4891-RA 40..948 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16095036..16095946 17..927 4555 100 Plus
Blast to na_te.dros performed 2014-11-27 07:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 1553..1591 31..71 119 80.5 Plus

BS05858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:27 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:47 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 28..936 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:34 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 40..946 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:27 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 28..936 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:43 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
CG4891-RA 40..946 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:43 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16095036..16095942 17..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:34 Download gff for BS05858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16095036..16095942 17..923 100   Plus

BS05858.pep Sequence

Translation from 16 to 924

> BS05858.pep
MREKWKALLLLLQLLAHLESGQAIWFPWYFQRYGLAPHSSRHGGGHKNNT
DPGSTCPPGYEIKASVAGLSGGTAGCERVVGSKAGRLCDDNPVLMQLARL
YVVSPERIVLLLAQPSLTESCAEITDVLDNIRNSMRNCVLAPDNIYGRLA
DGLSYFQSEVCVGGDGSNRKRCTGLQESHNCLKELRTDMIECEAPADWYE
RRNASKVCHIFNDVLDCYYTRAALLCGLEVARQLRSFAGDSMGRAMIHKC
EVSKRLPRVDNAMPVNASSGASLRSSWLGALISWIFVIYFSDIKYIFGLL
VY*

BS05858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4891-PA 302 CG4891-PA 1..302 1..302 1608 100 Plus