Clone Sequence Records
BS05858.3prime Sequence
750 bp (749 high quality bases) assembled on 2005-12-03
> BS05858.3prime
ATGGTCTAGAAAGCTTTTAATATACCAATAATCCAAAAATATATTTAATG
TCTGAAAAATAAATAACGAAAATCCATGAAATAAGTGCACCTAACCATGA
TGACCTTAAGCTAGCCCCACTACTTGCGTTGACGGGCATGGCATTATCAA
CCCGGGGTAGCCTTTTGCTGACCTCGCACTTGTGGATCATGGCTCTGCCC
ATGCTGTCGCCTGCGAAGGACCTTAGTTGCCTGGCAACCTCAAGTCCGCA
CAACAAGGCTGCCCTCGTATAGTAACAGTCGAGAACATCGTTGAATATGT
GGCACACCTTGCTGGCATTCCTGCGTTCGTACCAATCAGCCGGTGCCTCG
CACTCGATCATGTCCGTCCGGAGTTCCTTGAGGCAGTTGTGCGACTCCTG
GAGTCCAGTGCATCGCTTCCTGTTGCTGCCATCGCCACCAACGCAGACCT
CCGATTGGAAGTAGCTCAGTCCATCAGCTAGTCTTCCGTATATGTTATCC
GGTGCCAAGACACAATTGCGCATGGAGTTCCGAATATTGTCCAGCACATC
GGTGATCTCGGCGCAGGACTCGGTTAGTGATGGCTGCGCCAGGAGCAGGA
CAATCCTCTCAGGACTCACCACATAGAGACGCGCCAGTTGCATCAACACG
GGATTATCGTCGCAAAGGCGTCCTGCTTTCGATCCAACTACGCGTTCACA
TCCGGCCGTTCCGCCAGACAATCCTGCCACTGATGCCTTTATTTCGTAGC
BS05858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-PA | 909 | CG4891-RA | 176..909 | 750..17 | 3670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-RA | 948 | CG4891-RA | 215..948 | 750..17 | 3670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16095211..16095946 | 750..15 | 3680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:28:13 has no hits.
BS05858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:31 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-PA | 176..909 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:46 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-PA | 176..909 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:51:07 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 215..948 | 17..750 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:11 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 215..948 | 17..750 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:11 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16095211..16095947 | 14..750 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:51:07 Download gff for
BS05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16095211..16095947 | 14..750 | 99 | <- | Minus |
BS05858.5prime Sequence
910 bp (820 high quality bases) assembled on 2005-12-03
> BS05858.5prime
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGNTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAATAT
ATTTTTGGAT
BS05858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-PA | 909 | CG4891-RA | 1..881 | 17..897 | 4386 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-RA | 948 | CG4891-RA | 40..934 | 17..910 | 4439 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16095036..16095930 | 17..910 | 4414 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 13:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1553..1591 | 31..71 | 119 | 80.5 | Plus |
BS05858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:32 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-PA | 1..895 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:48 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-PA | 1..895 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:08 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 40..934 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:08 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 40..934 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:08 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16095036..16095930 | 17..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:08 Download gff for
BS05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16095036..16095930 | 17..910 | 99 | | Plus |
BS05858.complete Sequence
941 bp (941 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635267
> BS05858.complete
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGTTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAAATA
TATTTTTGGATTATTGGTATATTAAAAGCTTTCTAGACCAT
BS05858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-RA | 909 | CG4891-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-RA | 948 | CG4891-RA | 40..948 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16095036..16095946 | 17..927 | 4555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1553..1591 | 31..71 | 119 | 80.5 | Plus |
BS05858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:27 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:47 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 28..936 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:34 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 40..946 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:27 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 28..936 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:43 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4891-RA | 40..946 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:43 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16095036..16095942 | 17..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:34 Download gff for
BS05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16095036..16095942 | 17..923 | 100 | | Plus |
BS05858.pep Sequence
Translation from 16 to 924
> BS05858.pep
MREKWKALLLLLQLLAHLESGQAIWFPWYFQRYGLAPHSSRHGGGHKNNT
DPGSTCPPGYEIKASVAGLSGGTAGCERVVGSKAGRLCDDNPVLMQLARL
YVVSPERIVLLLAQPSLTESCAEITDVLDNIRNSMRNCVLAPDNIYGRLA
DGLSYFQSEVCVGGDGSNRKRCTGLQESHNCLKELRTDMIECEAPADWYE
RRNASKVCHIFNDVLDCYYTRAALLCGLEVARQLRSFAGDSMGRAMIHKC
EVSKRLPRVDNAMPVNASSGASLRSSWLGALISWIFVIYFSDIKYIFGLL
VY*
BS05858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4891-PA | 302 | CG4891-PA | 1..302 | 1..302 | 1608 | 100 | Plus |