Clone BS05859 Report

Search the DGRC for BS05859

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG7448-RA
Protein status:BS05859.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05859.5prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-03

> BS05859.5prime
GAAGTTATCAGTCGACATGTTAAAGCTGGACCAATCGAAGTTGGTTTCGG
GGGAGCCTAAATCCGGATCGGGTGACATAGACATACCGAAGACGTCAGAG
GAGAACCAGCTGGACGCGATCATCGTTGAGATTGGCCAGTTCGGACATTT
TCAAGTCTTCAACTACTTGCTGCTTTGCCTGCCCATCATCTGCAACGCCT
TTTACTCCATTTCCTACGTCTTCACCGCCAGCGATGTGCCCCACAGGTGC
AACATCACAATGTGCGATGGGTTAGACTCCAGGTATGAAGAACCATTCCT
AAATTTCACCACTCCACAACGTCACGGCAACTGGGCTCAATGTGAGCAGT
ACGCCGTGCGATCCAACCTCGTGGGTCAACCTTCGTGCAATGTCAGCAGC
TTTGATGTTGGTCAGAGGGTCCCCTGCGATGCTGGCTATAAGATGACGGA
CGGCGAAAAGACAATAGCAGCTGAGTTTAACATTTTCTGCTTTGACCAGT
GGAAGCTGTCAATGGTGGGAACCGTCAACAACATTGGACAGTTTGTGGGT
TATCTAGCCAATCCGTGAAAGCTTTCTAGACC

BS05859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-PA 552 CG7448-RA 1..552 17..568 2760 100 Plus
CG7448-PB 1104 CG7448-RB 1..524 17..540 2620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-RA 920 CG7448-RA 346..898 16..568 2765 100 Plus
CG7448-RC 1446 CG7448-RC 346..870 16..540 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21950170..21950403 16..249 1170 100 Plus
3L 28110227 3L 21950454..21950684 245..475 1155 100 Plus
3L 28110227 3L 21950735..21950829 474..568 475 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:14:45 has no hits.

BS05859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:35 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:51 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:49 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:12 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 9..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:12 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21950164..21950400 9..246 98 -> Plus
3L 21950456..21950684 247..475 100 -> Plus
3L 21950737..21950829 476..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:49 Download gff for BS05859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21943264..21943500 9..246 98 -> Plus
arm_3L 21943556..21943784 247..475 100 -> Plus
arm_3L 21943837..21943929 476..568 100   Plus

BS05859.3prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-03

> BS05859.3prime
ATGGTCTAGAAAGCTTTCACGGATTGGCTAGATAACCCACAAACTGTCCA
ATGTTGTTGACGGTTCCCACCATTGACAGCTTCCACTGGTCAAAGCAGAA
AATGTTAAACTCAGCTGCTATTGTCTTTTCGCCGTCCGTCATCTTATAGC
CAGCATCGCAGGGGACCCTCTGACCAACATCAAAGCTGCTGACATTGCAC
GAAGGTTGACCCACGAGGTTGGATCGCACGGCGTACTGCTCACATTGAGC
CCAGTTGCCGTGACGTTGTGGAGTGGTGAAATTTAGGAATGGTTCTTCAT
ACCTGGAGTCTAACCCATCGCACATTGTGATGTTGCACCTGTGGGGCACA
TCGCTGGCGGTGAAGACGTAGGAAATGGAGTAAAAGGCGTTGCAGATGAT
GGGCAGGCAAAGCAGCAAGTAGTTGAAGACTTGAAAATGTCCGAACTGGC
CAATCTCAACGATGATCGCGTCCAGCTGGTTCTCCTCTGACGTCTTCGGT
ATGTCTATGTCACCCGATCCGGATTTAGGCTCCCCCGAAACCAACTTCGA
TTGGTCCAGCTTTAACATGTCGACTGATAACT

BS05859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-PA 552 CG7448-RA 1..552 568..17 2760 100 Minus
CG7448-PB 1104 CG7448-RB 1..524 568..45 2620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-RA 920 CG7448-RA 346..898 569..17 2765 100 Minus
CG7448-RC 1446 CG7448-RC 346..870 569..45 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21950170..21950403 569..336 1170 100 Minus
3L 28110227 3L 21950454..21950684 340..110 1155 100 Minus
3L 28110227 3L 21950735..21950829 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:38:33 has no hits.

BS05859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:33 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:49 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:33 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 17..576 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:24 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 17..576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:24 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21950164..21950400 339..576 98 -> Minus
3L 21950456..21950684 110..338 100 -> Minus
3L 21950737..21950829 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:33 Download gff for BS05859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21943264..21943500 339..576 98 -> Minus
arm_3L 21943556..21943784 110..338 100 -> Minus
arm_3L 21943837..21943929 17..109 100   Minus

BS05859.complete Sequence

584 bp (584 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635268

> BS05859.complete
GAAGTTATCAGTCGACATGTTAAAGCTGGACCAATCGAAGTTGGTTTCGG
GGGAGCCTAAATCCGGATCGGGTGACATAGACATACCGAAGACGTCAGAG
GAGAACCAGCTGGACGCGATCATCGTTGAGATTGGCCAGTTCGGACATTT
TCAAGTCTTCAACTACTTGCTGCTTTGCCTGCCCATCATCTGCAACGCCT
TTTACTCCATTTCCTACGTCTTCACCGCCAGCGATGTGCCCCACAGGTGC
AACATCACAATGTGCGATGGGTTAGACTCCAGGTATGAAGAACCATTCCT
AAATTTCACCACTCCACAACGTCACGGCAACTGGGCTCAATGTGAGCAGT
ACGCCGTGCGATCCAACCTCGTGGGTCAACCTTCGTGCAATGTCAGCAGC
TTTGATGTTGGTCAGAGGGTCCCCTGCGATGCTGGCTATAAGATGACGGA
CGGCGAAAAGACAATAGCAGCTGAGTTTAACATTTTCTGCTTTGACCAGT
GGAAGCTGTCAATGGTGGGAACCGTCAACAACATTGGACAGTTTGTGGGT
TATCTAGCCAATCCGTGAAAGCTTTCTAGACCAT

BS05859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-RA 552 CG7448-PA 1..552 17..568 2760 100 Plus
CG7448-RC 1100 CG7448-PC 1..524 17..540 2620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-RA 920 CG7448-RA 346..898 16..568 2765 100 Plus
CG7448-RC 1446 CG7448-RC 346..870 16..540 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21950170..21950403 16..249 1170 100 Plus
3L 28110227 3L 21950454..21950684 245..475 1155 100 Plus
3L 28110227 3L 21950735..21950829 474..568 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:52:55 has no hits.

BS05859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:28 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:49 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 9..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:19 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 352..897 22..567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:28 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 340..898 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:48 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
CG7448-RA 352..897 22..567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:48 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21950176..21950400 22..246 100 -> Plus
3L 21950456..21950684 247..475 100 -> Plus
3L 21950737..21950828 476..567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:19 Download gff for BS05859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21943276..21943500 22..246 100 -> Plus
arm_3L 21943556..21943784 247..475 100 -> Plus
arm_3L 21943837..21943928 476..567 100   Plus

BS05859.pep Sequence

Translation from 16 to 567

> BS05859.pep
MLKLDQSKLVSGEPKSGSGDIDIPKTSEENQLDAIIVEIGQFGHFQVFNY
LLLCLPIICNAFYSISYVFTASDVPHRCNITMCDGLDSRYEEPFLNFTTP
QRHGNWAQCEQYAVRSNLVGQPSCNVSSFDVGQRVPCDAGYKMTDGEKTI
AAEFNIFCFDQWKLSMVGTVNNIGQFVGYLANP*

BS05859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7448-PA 183 CG7448-PA 1..183 1..183 988 100 Plus
CG7448-PC 373 CG7448-PC 1..175 1..175 944 100 Plus
CG7458-PA 572 CG7458-PA 34..190 28..178 416 51.3 Plus
CG7442-PA 568 CG7442-PA 20..176 25..178 325 41.8 Plus
CG4630-PA 563 CG4630-PA 16..176 33..178 204 33.5 Plus