Clone Sequence Records
BS05859.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-03
> BS05859.5prime
GAAGTTATCAGTCGACATGTTAAAGCTGGACCAATCGAAGTTGGTTTCGG
GGGAGCCTAAATCCGGATCGGGTGACATAGACATACCGAAGACGTCAGAG
GAGAACCAGCTGGACGCGATCATCGTTGAGATTGGCCAGTTCGGACATTT
TCAAGTCTTCAACTACTTGCTGCTTTGCCTGCCCATCATCTGCAACGCCT
TTTACTCCATTTCCTACGTCTTCACCGCCAGCGATGTGCCCCACAGGTGC
AACATCACAATGTGCGATGGGTTAGACTCCAGGTATGAAGAACCATTCCT
AAATTTCACCACTCCACAACGTCACGGCAACTGGGCTCAATGTGAGCAGT
ACGCCGTGCGATCCAACCTCGTGGGTCAACCTTCGTGCAATGTCAGCAGC
TTTGATGTTGGTCAGAGGGTCCCCTGCGATGCTGGCTATAAGATGACGGA
CGGCGAAAAGACAATAGCAGCTGAGTTTAACATTTTCTGCTTTGACCAGT
GGAAGCTGTCAATGGTGGGAACCGTCAACAACATTGGACAGTTTGTGGGT
TATCTAGCCAATCCGTGAAAGCTTTCTAGACC
BS05859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-PA | 552 | CG7448-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG7448-PB | 1104 | CG7448-RB | 1..524 | 17..540 | 2620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-RA | 920 | CG7448-RA | 346..898 | 16..568 | 2765 | 100 | Plus |
CG7448-RC | 1446 | CG7448-RC | 346..870 | 16..540 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21950170..21950403 | 16..249 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 21950454..21950684 | 245..475 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 21950735..21950829 | 474..568 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:14:45 has no hits.
BS05859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:35 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:51 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:49 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:12 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 9..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:12 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21950164..21950400 | 9..246 | 98 | -> | Plus |
3L | 21950456..21950684 | 247..475 | 100 | -> | Plus |
3L | 21950737..21950829 | 476..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:49 Download gff for
BS05859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21943264..21943500 | 9..246 | 98 | -> | Plus |
arm_3L | 21943556..21943784 | 247..475 | 100 | -> | Plus |
arm_3L | 21943837..21943929 | 476..568 | 100 | | Plus |
BS05859.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-03
> BS05859.3prime
ATGGTCTAGAAAGCTTTCACGGATTGGCTAGATAACCCACAAACTGTCCA
ATGTTGTTGACGGTTCCCACCATTGACAGCTTCCACTGGTCAAAGCAGAA
AATGTTAAACTCAGCTGCTATTGTCTTTTCGCCGTCCGTCATCTTATAGC
CAGCATCGCAGGGGACCCTCTGACCAACATCAAAGCTGCTGACATTGCAC
GAAGGTTGACCCACGAGGTTGGATCGCACGGCGTACTGCTCACATTGAGC
CCAGTTGCCGTGACGTTGTGGAGTGGTGAAATTTAGGAATGGTTCTTCAT
ACCTGGAGTCTAACCCATCGCACATTGTGATGTTGCACCTGTGGGGCACA
TCGCTGGCGGTGAAGACGTAGGAAATGGAGTAAAAGGCGTTGCAGATGAT
GGGCAGGCAAAGCAGCAAGTAGTTGAAGACTTGAAAATGTCCGAACTGGC
CAATCTCAACGATGATCGCGTCCAGCTGGTTCTCCTCTGACGTCTTCGGT
ATGTCTATGTCACCCGATCCGGATTTAGGCTCCCCCGAAACCAACTTCGA
TTGGTCCAGCTTTAACATGTCGACTGATAACT
BS05859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-PA | 552 | CG7448-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG7448-PB | 1104 | CG7448-RB | 1..524 | 568..45 | 2620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-RA | 920 | CG7448-RA | 346..898 | 569..17 | 2765 | 100 | Minus |
CG7448-RC | 1446 | CG7448-RC | 346..870 | 569..45 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21950170..21950403 | 569..336 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 21950454..21950684 | 340..110 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 21950735..21950829 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:38:33 has no hits.
BS05859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:33 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:49 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:33 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 17..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:24 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 17..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:24 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21950164..21950400 | 339..576 | 98 | -> | Minus |
3L | 21950456..21950684 | 110..338 | 100 | -> | Minus |
3L | 21950737..21950829 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:33 Download gff for
BS05859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21943264..21943500 | 339..576 | 98 | -> | Minus |
arm_3L | 21943556..21943784 | 110..338 | 100 | -> | Minus |
arm_3L | 21943837..21943929 | 17..109 | 100 | | Minus |
BS05859.complete Sequence
584 bp (584 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635268
> BS05859.complete
GAAGTTATCAGTCGACATGTTAAAGCTGGACCAATCGAAGTTGGTTTCGG
GGGAGCCTAAATCCGGATCGGGTGACATAGACATACCGAAGACGTCAGAG
GAGAACCAGCTGGACGCGATCATCGTTGAGATTGGCCAGTTCGGACATTT
TCAAGTCTTCAACTACTTGCTGCTTTGCCTGCCCATCATCTGCAACGCCT
TTTACTCCATTTCCTACGTCTTCACCGCCAGCGATGTGCCCCACAGGTGC
AACATCACAATGTGCGATGGGTTAGACTCCAGGTATGAAGAACCATTCCT
AAATTTCACCACTCCACAACGTCACGGCAACTGGGCTCAATGTGAGCAGT
ACGCCGTGCGATCCAACCTCGTGGGTCAACCTTCGTGCAATGTCAGCAGC
TTTGATGTTGGTCAGAGGGTCCCCTGCGATGCTGGCTATAAGATGACGGA
CGGCGAAAAGACAATAGCAGCTGAGTTTAACATTTTCTGCTTTGACCAGT
GGAAGCTGTCAATGGTGGGAACCGTCAACAACATTGGACAGTTTGTGGGT
TATCTAGCCAATCCGTGAAAGCTTTCTAGACCAT
BS05859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-RA | 552 | CG7448-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG7448-RC | 1100 | CG7448-PC | 1..524 | 17..540 | 2620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-RA | 920 | CG7448-RA | 346..898 | 16..568 | 2765 | 100 | Plus |
CG7448-RC | 1446 | CG7448-RC | 346..870 | 16..540 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21950170..21950403 | 16..249 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 21950454..21950684 | 245..475 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 21950735..21950829 | 474..568 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:55 has no hits.
BS05859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:28 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:49 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:19 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 352..897 | 22..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:28 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 340..898 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:48 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7448-RA | 352..897 | 22..567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:48 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21950176..21950400 | 22..246 | 100 | -> | Plus |
3L | 21950456..21950684 | 247..475 | 100 | -> | Plus |
3L | 21950737..21950828 | 476..567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:19 Download gff for
BS05859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21943276..21943500 | 22..246 | 100 | -> | Plus |
arm_3L | 21943556..21943784 | 247..475 | 100 | -> | Plus |
arm_3L | 21943837..21943928 | 476..567 | 100 | | Plus |
BS05859.pep Sequence
Translation from 16 to 567
> BS05859.pep
MLKLDQSKLVSGEPKSGSGDIDIPKTSEENQLDAIIVEIGQFGHFQVFNY
LLLCLPIICNAFYSISYVFTASDVPHRCNITMCDGLDSRYEEPFLNFTTP
QRHGNWAQCEQYAVRSNLVGQPSCNVSSFDVGQRVPCDAGYKMTDGEKTI
AAEFNIFCFDQWKLSMVGTVNNIGQFVGYLANP*
BS05859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7448-PA | 183 | CG7448-PA | 1..183 | 1..183 | 988 | 100 | Plus |
CG7448-PC | 373 | CG7448-PC | 1..175 | 1..175 | 944 | 100 | Plus |
CG7458-PA | 572 | CG7458-PA | 34..190 | 28..178 | 416 | 51.3 | Plus |
CG7442-PA | 568 | CG7442-PA | 20..176 | 25..178 | 325 | 41.8 | Plus |
CG4630-PA | 563 | CG4630-PA | 16..176 | 33..178 | 204 | 33.5 | Plus |