Clone Sequence Records
BS05861.3prime Sequence
778 bp (746 high quality bases) assembled on 2005-12-03
> BS05861.3prime
ATGGTCTAGAAAGCTTTTATATTTCTAGTGCTTTAAGATCGGCTTCCAGT
TGCTTAATGTACTTGTCAATGTACGCCAGTTGCTTGGGATTGTGTTCACG
TGCCTTGACCACGCTTTCCTCGAACTTGTCGTCTTGTTTCAAACCCTTGT
AGGCGTGGGCCTGGTAGAGCCAGGCGCGGAGATTACTCTCCTGCAGCTTC
TCCAACACGTACTGGCAGTCCTTGAGGGCGCGCTTATAGTTCTGTAGCTT
GATGTAGCACAAGGCGCGATTGCAATATGTAATAGCGCTGTCCTTAACTT
TGATGATAGCCTTGTCATAATGTAGGATTGCCTTCTCGTACTTCTGGCTG
CGAAATGCTTCGTTTCCCTGACTTCTCTGTAGTTCTGCTTCGTATTCGGC
TTTGGCACGTGCCTCTGCACGATCATTGGCATCCTTCTCCACCTGCTCCA
TGAAACTCTTCTGGTTCATATCCTTGACTTGCTTCTCATTGTCTTCTTCT
AGAGACTTTCTGTTGATGACTGTTCGATTTTCTTTCACTTTAAGCCGCAC
CTTATCCACATCCAAGTTGTCAAAGTTGATCTTCTCCTTGGCATCGCCAC
CTGCCTTTGAATCTTCATCGTCACAGGGTGCCTTGTTCTGCAGTATACAA
TCGATCTTCGCAAGGGTTGCCTCGAACTCAGCAAAATCATCCGCGACACT
GGGGTTCAAATTGCAGTTTAACATAGTTGCCTTAAGTTGGGCATTGTCTT
TAACCTCTTCGTTTGCCATGTCGACTGA
BS05861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-PA | 753 | CG6980-RA | 1..753 | 769..17 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-RA | 927 | CG6980-RA | 66..818 | 769..17 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24807686..24808083 | 769..372 | 1990 | 100 | Minus |
3R | 32079331 | 3R | 24808337..24808568 | 248..17 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 24808140..24808265 | 373..248 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:24:58 has no hits.
BS05861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:36 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:52 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-PA | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:14 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..821 | 11..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:43 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..821 | 11..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:43 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24807686..24808083 | 372..769 | 100 | -> | Minus |
3R | 24808142..24808264 | 249..371 | 100 | -> | Minus |
3R | 24808337..24808571 | 11..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:14 Download gff for
BS05861.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20633864..20633986 | 249..371 | 100 | -> | Minus |
arm_3R | 20634059..20634293 | 11..248 | 98 | | Minus |
arm_3R | 20633408..20633805 | 372..769 | 100 | -> | Minus |
BS05861.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BS05861.5prime
GAAGTTATCAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAAC
TTAAGGCAACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGAT
TTTGCTGAGTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAA
CAAGGCACCCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGG
AGAAGATCAACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTG
AAAGAAAATCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGA
GAAGCAAGTCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGA
AGGATGCCAATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCA
GAACTACAGAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGA
GAAGGCAATCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCG
CTATTACATATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTAT
AAGCGCGCCCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAG
TAATCTCCGCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAAC
AAGACGACAAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCC
AAGCAACTGGCGTACATTGACAAGTACATTAAGCAACTGGAAGCCGATCT
TAAAGCACTAGAAATATAAAAGCTTTCTAGACC
BS05861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-PA | 753 | CG6980-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-RA | 927 | CG6980-RA | 66..818 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24807686..24808083 | 17..414 | 1990 | 100 | Plus |
3R | 32079331 | 3R | 24808337..24808568 | 538..769 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 24808140..24808265 | 413..538 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:51:17 has no hits.
BS05861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:37 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:54 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:43:15 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..821 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:29 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..821 | 17..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:29 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24807686..24808083 | 17..414 | 100 | -> | Plus |
3R | 24808142..24808264 | 415..537 | 100 | -> | Plus |
3R | 24808337..24808571 | 538..775 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:43:15 Download gff for
BS05861.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20633408..20633805 | 17..414 | 100 | -> | Plus |
arm_3R | 20633864..20633986 | 415..537 | 100 | -> | Plus |
arm_3R | 20634059..20634293 | 538..775 | 98 | | Plus |
BS05861.complete Sequence
785 bp (785 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635269
> BS05861.complete
GAAGTTATCAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAAC
TTAAGGCAACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGAT
TTTGCTGAGTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAA
CAAGGCACCCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGG
AGAAGATCAACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTG
AAAGAAAATCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGA
GAAGCAAGTCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGA
AGGATGCCAATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCA
GAACTACAGAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGA
GAAGGCAATCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCG
CTATTACATATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTAT
AAGCGCGCCCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAG
TAATCTCCGCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAAC
AAGACGACAAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCC
AAGCAACTGGCGTACATTGACAAGTACATTAAGCAACTGGAAGCCGATCT
TAAAGCACTAGAAATATAAAAGCTTTCTAGACCAT
BS05861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-RA | 753 | CG6980-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-RA | 927 | CG6980-RA | 66..818 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24807686..24808083 | 17..414 | 1990 | 100 | Plus |
3R | 32079331 | 3R | 24808337..24808568 | 538..769 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 24808140..24808265 | 413..538 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:31 has no hits.
BS05861.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:30 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:51 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 76..831 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:13 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..810 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:30 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 76..831 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:50 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6980-RA | 66..810 | 17..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:50 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24807686..24808083 | 17..414 | 100 | -> | Plus |
3R | 24808142..24808264 | 415..537 | 100 | -> | Plus |
3R | 24808337..24808560 | 538..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:13 Download gff for
BS05861.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20633408..20633805 | 17..414 | 100 | -> | Plus |
arm_3R | 20633864..20633986 | 415..537 | 100 | -> | Plus |
arm_3R | 20634059..20634282 | 538..761 | 100 | | Plus |
BS05861.pep Sequence
Translation from 16 to 768
> BS05861.pep
MANEEVKDNAQLKATMLNCNLNPSVADDFAEFEATLAKIDCILQNKAPCD
DEDSKAGGDAKEKINFDNLDVDKVRLKVKENRTVINRKSLEEDNEKQVKD
MNQKSFMEQVEKDANDRAEARAKAEYEAELQRSQGNEAFRSQKYEKAILH
YDKAIIKVKDSAITYCNRALCYIKLQNYKRALKDCQYVLEKLQESNLRAW
LYQAHAYKGLKQDDKFEESVVKAREHNPKQLAYIDKYIKQLEADLKALEI
*
BS05861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6980-PA | 250 | CG6980-PA | 1..250 | 1..250 | 1283 | 100 | Plus |
CG34297-PA | 233 | CG34297-PA | 6..233 | 22..242 | 353 | 34.3 | Plus |
CG34274-PA | 250 | CG34274-PA | 64..248 | 59..243 | 308 | 35.1 | Plus |
CG31294-PA | 225 | CG31294-PA | 38..224 | 52..244 | 288 | 35.4 | Plus |
Hop-PA | 490 | CG2720-PA | 264..418 | 93..237 | 175 | 30.8 | Plus |