Clone BS05861 Report

Search the DGRC for BS05861

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG6980-RA
Protein status:BS05861.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05861.3prime Sequence

778 bp (746 high quality bases) assembled on 2005-12-03

> BS05861.3prime
ATGGTCTAGAAAGCTTTTATATTTCTAGTGCTTTAAGATCGGCTTCCAGT
TGCTTAATGTACTTGTCAATGTACGCCAGTTGCTTGGGATTGTGTTCACG
TGCCTTGACCACGCTTTCCTCGAACTTGTCGTCTTGTTTCAAACCCTTGT
AGGCGTGGGCCTGGTAGAGCCAGGCGCGGAGATTACTCTCCTGCAGCTTC
TCCAACACGTACTGGCAGTCCTTGAGGGCGCGCTTATAGTTCTGTAGCTT
GATGTAGCACAAGGCGCGATTGCAATATGTAATAGCGCTGTCCTTAACTT
TGATGATAGCCTTGTCATAATGTAGGATTGCCTTCTCGTACTTCTGGCTG
CGAAATGCTTCGTTTCCCTGACTTCTCTGTAGTTCTGCTTCGTATTCGGC
TTTGGCACGTGCCTCTGCACGATCATTGGCATCCTTCTCCACCTGCTCCA
TGAAACTCTTCTGGTTCATATCCTTGACTTGCTTCTCATTGTCTTCTTCT
AGAGACTTTCTGTTGATGACTGTTCGATTTTCTTTCACTTTAAGCCGCAC
CTTATCCACATCCAAGTTGTCAAAGTTGATCTTCTCCTTGGCATCGCCAC
CTGCCTTTGAATCTTCATCGTCACAGGGTGCCTTGTTCTGCAGTATACAA
TCGATCTTCGCAAGGGTTGCCTCGAACTCAGCAAAATCATCCGCGACACT
GGGGTTCAAATTGCAGTTTAACATAGTTGCCTTAAGTTGGGCATTGTCTT
TAACCTCTTCGTTTGCCATGTCGACTGA

BS05861.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-PA 753 CG6980-RA 1..753 769..17 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-RA 927 CG6980-RA 66..818 769..17 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24807686..24808083 769..372 1990 100 Minus
3R 32079331 3R 24808337..24808568 248..17 1160 100 Minus
3R 32079331 3R 24808140..24808265 373..248 630 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:24:58 has no hits.

BS05861.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:36 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:52 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-PA 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:14 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..821 11..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:43 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..821 11..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:43 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24807686..24808083 372..769 100 -> Minus
3R 24808142..24808264 249..371 100 -> Minus
3R 24808337..24808571 11..248 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:14 Download gff for BS05861.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20633864..20633986 249..371 100 -> Minus
arm_3R 20634059..20634293 11..248 98   Minus
arm_3R 20633408..20633805 372..769 100 -> Minus

BS05861.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BS05861.5prime
GAAGTTATCAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAAC
TTAAGGCAACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGAT
TTTGCTGAGTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAA
CAAGGCACCCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGG
AGAAGATCAACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTG
AAAGAAAATCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGA
GAAGCAAGTCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGA
AGGATGCCAATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCA
GAACTACAGAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGA
GAAGGCAATCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCG
CTATTACATATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTAT
AAGCGCGCCCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAG
TAATCTCCGCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAAC
AAGACGACAAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCC
AAGCAACTGGCGTACATTGACAAGTACATTAAGCAACTGGAAGCCGATCT
TAAAGCACTAGAAATATAAAAGCTTTCTAGACC

BS05861.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-PA 753 CG6980-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-RA 927 CG6980-RA 66..818 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24807686..24808083 17..414 1990 100 Plus
3R 32079331 3R 24808337..24808568 538..769 1160 100 Plus
3R 32079331 3R 24808140..24808265 413..538 630 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:51:17 has no hits.

BS05861.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:37 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:54 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:43:15 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..821 17..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:29 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..821 17..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:29 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24807686..24808083 17..414 100 -> Plus
3R 24808142..24808264 415..537 100 -> Plus
3R 24808337..24808571 538..775 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:43:15 Download gff for BS05861.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20633408..20633805 17..414 100 -> Plus
arm_3R 20633864..20633986 415..537 100 -> Plus
arm_3R 20634059..20634293 538..775 98   Plus

BS05861.complete Sequence

785 bp (785 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635269

> BS05861.complete
GAAGTTATCAGTCGACATGGCAAACGAAGAGGTTAAAGACAATGCCCAAC
TTAAGGCAACTATGTTAAACTGCAATTTGAACCCCAGTGTCGCGGATGAT
TTTGCTGAGTTCGAGGCAACCCTTGCGAAGATCGATTGTATACTGCAGAA
CAAGGCACCCTGTGACGATGAAGATTCAAAGGCAGGTGGCGATGCCAAGG
AGAAGATCAACTTTGACAACTTGGATGTGGATAAGGTGCGGCTTAAAGTG
AAAGAAAATCGAACAGTCATCAACAGAAAGTCTCTAGAAGAAGACAATGA
GAAGCAAGTCAAGGATATGAACCAGAAGAGTTTCATGGAGCAGGTGGAGA
AGGATGCCAATGATCGTGCAGAGGCACGTGCCAAAGCCGAATACGAAGCA
GAACTACAGAGAAGTCAGGGAAACGAAGCATTTCGCAGCCAGAAGTACGA
GAAGGCAATCCTACATTATGACAAGGCTATCATCAAAGTTAAGGACAGCG
CTATTACATATTGCAATCGCGCCTTGTGCTACATCAAGCTACAGAACTAT
AAGCGCGCCCTCAAGGACTGCCAGTACGTGTTGGAGAAGCTGCAGGAGAG
TAATCTCCGCGCCTGGCTCTACCAGGCCCACGCCTACAAGGGTTTGAAAC
AAGACGACAAGTTCGAGGAAAGCGTGGTCAAGGCACGTGAACACAATCCC
AAGCAACTGGCGTACATTGACAAGTACATTAAGCAACTGGAAGCCGATCT
TAAAGCACTAGAAATATAAAAGCTTTCTAGACCAT

BS05861.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-RA 753 CG6980-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-RA 927 CG6980-RA 66..818 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24807686..24808083 17..414 1990 100 Plus
3R 32079331 3R 24808337..24808568 538..769 1160 100 Plus
3R 32079331 3R 24808140..24808265 413..538 630 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:01:31 has no hits.

BS05861.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:30 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:51 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 76..831 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:13 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..810 17..761 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:30 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 76..831 17..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:50 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
CG6980-RA 66..810 17..761 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:50 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24807686..24808083 17..414 100 -> Plus
3R 24808142..24808264 415..537 100 -> Plus
3R 24808337..24808560 538..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:13 Download gff for BS05861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20633408..20633805 17..414 100 -> Plus
arm_3R 20633864..20633986 415..537 100 -> Plus
arm_3R 20634059..20634282 538..761 100   Plus

BS05861.pep Sequence

Translation from 16 to 768

> BS05861.pep
MANEEVKDNAQLKATMLNCNLNPSVADDFAEFEATLAKIDCILQNKAPCD
DEDSKAGGDAKEKINFDNLDVDKVRLKVKENRTVINRKSLEEDNEKQVKD
MNQKSFMEQVEKDANDRAEARAKAEYEAELQRSQGNEAFRSQKYEKAILH
YDKAIIKVKDSAITYCNRALCYIKLQNYKRALKDCQYVLEKLQESNLRAW
LYQAHAYKGLKQDDKFEESVVKAREHNPKQLAYIDKYIKQLEADLKALEI
*

BS05861.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6980-PA 250 CG6980-PA 1..250 1..250 1283 100 Plus
CG34297-PA 233 CG34297-PA 6..233 22..242 353 34.3 Plus
CG34274-PA 250 CG34274-PA 64..248 59..243 308 35.1 Plus
CG31294-PA 225 CG31294-PA 38..224 52..244 288 35.4 Plus
Hop-PA 490 CG2720-PA 264..418 93..237 175 30.8 Plus