Clone Sequence Records
BS05862.3prime Sequence
811 bp (685 high quality bases) assembled on 2005-12-03
> BS05862.3prime
ATGGTCTAGAAAGCTTTCACAAAATGTTCAGCAGATCGCCCAGACGGGGC
AGATAAAAGTCTGGCTGGGGCAGCCTGTCTTTTTCCAGCCGGACATCCGA
GAGATTATTGTAACGACCCGTGCCCACCAGAAGCGATAGCATGCCACAAT
TGCTGGCGAAACCGACATCTATTTTGAGGCAGTCACCAATCATAAGCGTT
CGCTCGGTACGTAGTCCCTCGGCCTTGATAAAGGGCTCAAGGACCAATGG
ATTTGGCTTGCCCATCTCGAGGGCTTCACGCTCCGAACATGCCTCGATTC
CGGCCACAAAGGCCCCAGTGCCGGGGATACAAAAGGATGGATACTTGTGC
ACGGCATCCCGGTTGGTGACCAAAAAGGCGGCGTCGGGATTACTGCAGAG
GATGTGACAGGCGCGCGCCATCTTGCAGTAGCTAAAGTACTCATCCCAGC
CGACCACCACGGCACCCACGTCCTTCGCCGCCTCTGGGTTCCCAAACTCG
CGTGTCACAAAGTCCGGCCATTTGTCGCCCGGAGGCAGTTCATCTGTTCC
GCCGGCTCCGTAGCTGTCGATTCCGCGCTGCCTTAATTCCCGCGCAATGG
CCGCATTGCCCACCACATAGACCTTGTGCCGGGTCCTGTCGAACTTCGGA
CTCCCAACCAGATAGTCGGCGATGGCCGCCGTGGGCGAAATGATGTGTCG
GTCGCTGGGTAAATGGAAGCCAAGGCGCTGGGAGCGCTCAAAGAGCTCCT
GTCGCGTCTTTAGGCCATTGTTGGTAATCAGGTAAACTTTTTTGTCAAAT
CGATCCTGCAG
BS05862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PA | 948 | CG5577-RA | 154..948 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 198..992 | 811..17 | 3975 | 100 | Minus |
CG5577-RA | 1021 | CG5577-RA | 198..992 | 811..17 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840667 | 180..811 | 3160 | 100 | Plus |
3L | 28110227 | 3L | 17839820..17839983 | 17..180 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:57:11 has no hits.
BS05862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:38 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 154..948 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:56 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 154..948 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:05 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 198..994 | 13..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:33 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 198..994 | 13..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:33 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839818..17839982 | 13..179 | 98 | <- | Plus |
3L | 17840036..17840667 | 180..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:05 Download gff for
BS05862.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17832918..17833082 | 13..179 | 98 | <- | Plus |
arm_3L | 17833136..17833767 | 180..811 | 100 | | Plus |
BS05862.5prime Sequence
853 bp (754 high quality bases) assembled on 2005-12-03
> BS05862.5prime
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGGCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTG
BS05862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PA | 948 | CG5577-RA | 1..837 | 17..853 | 4160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 45..881 | 17..853 | 4170 | 99.9 | Plus |
CG5577-RA | 1021 | CG5577-RA | 45..881 | 17..853 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840724 | 801..113 | 3430 | 99.9 | Minus |
3L | 28110227 | 3L | 17841286..17841383 | 114..17 | 490 | 100 | Minus |
3L | 28110227 | 3L | 17839931..17839983 | 853..801 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:21:55 has no hits.
BS05862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:40 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:57 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:08 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 39..881 | 10..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:50 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 39..881 | 10..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:50 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839931..17839982 | 802..853 | 100 | <- | Minus |
3L | 17840036..17840723 | 114..801 | 99 | <- | Minus |
3L | 17841287..17841389 | 10..113 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:08 Download gff for
BS05862.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17833031..17833082 | 802..853 | 100 | <- | Minus |
arm_3L | 17833136..17833823 | 114..801 | 99 | <- | Minus |
arm_3L | 17834387..17834489 | 10..113 | 97 | | Minus |
BS05862.complete Sequence
980 bp (980 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635270
> BS05862.complete
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTGGTGGGCACGGGTCGTTACAATAATCTCTCGGATGTCCGGCTGGAAAA
AGACAGGCTGCCCCAGCCAGACTTTTATCTGCCCCGTCTGGGCGATCTGC
TGAACATTTTGTGAAAGCTTTCTAGACCAT
BS05862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 948 | CG5577-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
CG5577-RA | 948 | CG5577-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 45..992 | 17..964 | 4740 | 100 | Plus |
CG5577-RA | 1021 | CG5577-RA | 45..992 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840724 | 801..113 | 3445 | 100 | Minus |
3L | 28110227 | 3L | 17839820..17839983 | 964..801 | 820 | 100 | Minus |
3L | 28110227 | 3L | 17841286..17841383 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:53:10 has no hits.
BS05862.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:31 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:53 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 16..971 | 10..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:39 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 45..991 | 17..963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:17 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 45..991 | 17..963 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:17 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839821..17839982 | 802..963 | 100 | <- | Minus |
3L | 17840036..17840723 | 114..801 | 100 | <- | Minus |
3L | 17841287..17841383 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:39 Download gff for
BS05862.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17832921..17833082 | 802..963 | 100 | <- | Minus |
arm_3L | 17833136..17833823 | 114..801 | 100 | <- | Minus |
arm_3L | 17834387..17834483 | 17..113 | 100 | | Minus |
BS05862.pep Sequence
Translation from 16 to 963
> BS05862.pep
MSRGGAIDLTGLSEEQVSEWLQSFDTVLCDGDGTIWQDDTAIAGAPDVVN
ALQDRFDKKVYLITNNGLKTRQELFERSQRLGFHLPSDRHIISPTAAIAD
YLVGSPKFDRTRHKVYVVGNAAIARELRQRGIDSYGAGGTDELPPGDKWP
DFVTREFGNPEAAKDVGAVVVGWDEYFSYCKMARACHILCSNPDAAFLVT
NRDAVHKYPSFCIPGTGAFVAGIEACSEREALEMGKPNPLVLEPFIKAEG
LRTERTLMIGDCLKIDVGFASNCGMLSLLVGTGRYNNLSDVRLEKDRLPQ
PDFYLPRLGDLLNIL*
BS05862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PB | 315 | CG5577-PB | 1..315 | 1..315 | 1668 | 100 | Plus |
CG5577-PA | 315 | CG5577-PA | 1..315 | 1..315 | 1668 | 100 | Plus |
CG5567-PA | 330 | CG5567-PA | 16..319 | 1..312 | 494 | 38.1 | Plus |
CG32488-PB | 307 | CG32488-PB | 8..306 | 8..315 | 410 | 35 | Plus |
CG32488-PA | 307 | CG32488-PA | 8..306 | 8..315 | 410 | 35 | Plus |