Clone BS05862 Report

Search the DGRC for BS05862

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG5577-RA
Protein status:BS05862.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05862.3prime Sequence

811 bp (685 high quality bases) assembled on 2005-12-03

> BS05862.3prime
ATGGTCTAGAAAGCTTTCACAAAATGTTCAGCAGATCGCCCAGACGGGGC
AGATAAAAGTCTGGCTGGGGCAGCCTGTCTTTTTCCAGCCGGACATCCGA
GAGATTATTGTAACGACCCGTGCCCACCAGAAGCGATAGCATGCCACAAT
TGCTGGCGAAACCGACATCTATTTTGAGGCAGTCACCAATCATAAGCGTT
CGCTCGGTACGTAGTCCCTCGGCCTTGATAAAGGGCTCAAGGACCAATGG
ATTTGGCTTGCCCATCTCGAGGGCTTCACGCTCCGAACATGCCTCGATTC
CGGCCACAAAGGCCCCAGTGCCGGGGATACAAAAGGATGGATACTTGTGC
ACGGCATCCCGGTTGGTGACCAAAAAGGCGGCGTCGGGATTACTGCAGAG
GATGTGACAGGCGCGCGCCATCTTGCAGTAGCTAAAGTACTCATCCCAGC
CGACCACCACGGCACCCACGTCCTTCGCCGCCTCTGGGTTCCCAAACTCG
CGTGTCACAAAGTCCGGCCATTTGTCGCCCGGAGGCAGTTCATCTGTTCC
GCCGGCTCCGTAGCTGTCGATTCCGCGCTGCCTTAATTCCCGCGCAATGG
CCGCATTGCCCACCACATAGACCTTGTGCCGGGTCCTGTCGAACTTCGGA
CTCCCAACCAGATAGTCGGCGATGGCCGCCGTGGGCGAAATGATGTGTCG
GTCGCTGGGTAAATGGAAGCCAAGGCGCTGGGAGCGCTCAAAGAGCTCCT
GTCGCGTCTTTAGGCCATTGTTGGTAATCAGGTAAACTTTTTTGTCAAAT
CGATCCTGCAG

BS05862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PA 948 CG5577-RA 154..948 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 198..992 811..17 3975 100 Minus
CG5577-RA 1021 CG5577-RA 198..992 811..17 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840667 180..811 3160 100 Plus
3L 28110227 3L 17839820..17839983 17..180 820 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:57:11 has no hits.

BS05862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:38 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 154..948 17..811 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:56 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 154..948 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:05 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 198..994 13..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:33 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 198..994 13..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:33 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17839818..17839982 13..179 98 <- Plus
3L 17840036..17840667 180..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:05 Download gff for BS05862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17832918..17833082 13..179 98 <- Plus
arm_3L 17833136..17833767 180..811 100   Plus

BS05862.5prime Sequence

853 bp (754 high quality bases) assembled on 2005-12-03

> BS05862.5prime
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGGCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTG

BS05862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PA 948 CG5577-RA 1..837 17..853 4160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 45..881 17..853 4170 99.9 Plus
CG5577-RA 1021 CG5577-RA 45..881 17..853 4170 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840724 801..113 3430 99.9 Minus
3L 28110227 3L 17841286..17841383 114..17 490 100 Minus
3L 28110227 3L 17839931..17839983 853..801 265 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:21:55 has no hits.

BS05862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:40 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:57:57 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:08 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 39..881 10..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:50 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 39..881 10..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:50 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17839931..17839982 802..853 100 <- Minus
3L 17840036..17840723 114..801 99 <- Minus
3L 17841287..17841389 10..113 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:08 Download gff for BS05862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17833031..17833082 802..853 100 <- Minus
arm_3L 17833136..17833823 114..801 99 <- Minus
arm_3L 17834387..17834489 10..113 97   Minus

BS05862.complete Sequence

980 bp (980 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635270

> BS05862.complete
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTGGTGGGCACGGGTCGTTACAATAATCTCTCGGATGTCCGGCTGGAAAA
AGACAGGCTGCCCCAGCCAGACTTTTATCTGCCCCGTCTGGGCGATCTGC
TGAACATTTTGTGAAAGCTTTCTAGACCAT

BS05862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 948 CG5577-PB 1..948 17..964 4740 100 Plus
CG5577-RA 948 CG5577-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 45..992 17..964 4740 100 Plus
CG5577-RA 1021 CG5577-RA 45..992 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840724 801..113 3445 100 Minus
3L 28110227 3L 17839820..17839983 964..801 820 100 Minus
3L 28110227 3L 17841286..17841383 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:53:10 has no hits.

BS05862.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:31 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:53 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 16..971 10..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:39 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 45..991 17..963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:17 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 45..991 17..963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:17 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17839821..17839982 802..963 100 <- Minus
3L 17840036..17840723 114..801 100 <- Minus
3L 17841287..17841383 17..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:39 Download gff for BS05862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17832921..17833082 802..963 100 <- Minus
arm_3L 17833136..17833823 114..801 100 <- Minus
arm_3L 17834387..17834483 17..113 100   Minus

BS05862.pep Sequence

Translation from 16 to 963

> BS05862.pep
MSRGGAIDLTGLSEEQVSEWLQSFDTVLCDGDGTIWQDDTAIAGAPDVVN
ALQDRFDKKVYLITNNGLKTRQELFERSQRLGFHLPSDRHIISPTAAIAD
YLVGSPKFDRTRHKVYVVGNAAIARELRQRGIDSYGAGGTDELPPGDKWP
DFVTREFGNPEAAKDVGAVVVGWDEYFSYCKMARACHILCSNPDAAFLVT
NRDAVHKYPSFCIPGTGAFVAGIEACSEREALEMGKPNPLVLEPFIKAEG
LRTERTLMIGDCLKIDVGFASNCGMLSLLVGTGRYNNLSDVRLEKDRLPQ
PDFYLPRLGDLLNIL*

BS05862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PB 315 CG5577-PB 1..315 1..315 1668 100 Plus
CG5577-PA 315 CG5577-PA 1..315 1..315 1668 100 Plus
CG5567-PA 330 CG5567-PA 16..319 1..312 494 38.1 Plus
CG32488-PB 307 CG32488-PB 8..306 8..315 410 35 Plus
CG32488-PA 307 CG32488-PA 8..306 8..315 410 35 Plus