Clone Sequence Records
BS05865.3prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-03
> BS05865.3prime
ATGGTCTAGAAAGCTTCTACAGTTCCTCTTTGCCATCAAAGTCATACTCC
TCCTGGACCGGCGATTCGTCGCAGTAGCTCGCTTGTTCTGAGCAGATCTT
GATGTCTAAATCGTTTCCGAGCTCTTCGGCCTGGAAGGCTTTAACGAAGA
TCTCATCGTTGTCCTCCAGTACTTCGTTGCAGAAGTGCCCCAGGCTTTTG
TTGAGATCACCATCTTGCACAAAGTCAACCAACGAGGAGTCTGGGTTCAT
CTGACCATTGATGATCATCTTGAGGAGTGTGAATTTCCCGTTGCTCTTGT
AGGTTGCCTTCAAGTAGTCGTCCATTTTTTCGCAGATCTTCTCCATCAGT
TCGGTAAGGAACATTTCAGATTTCACTAGGCGAACTTTCTTGCTGATCGA
ATTTCCCTGTGCGTCCAGCCGGAATCCACTGACATCGGCCATCTTGTGGG
GGTCCTCCTTGGCAATGGCCTCCTCCAGTTCCGTAACCACGGCCTTGCAC
ACGTGACACTTGACCTCGCGGGAGGTGAAGCTGTAACCTTGGGCCAAGGC
CAGCAGGCCGAACAGGATAAGCGCCTTCGTCAGCATGTCGACTGATAACT
BS05865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12918-PA | 570 | CG12918-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..851 | 586..17 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051023..10051339 | 17..333 | 1585 | 100 | Plus |
2R | 25286936 | 2R | 10051533..10051702 | 333..502 | 850 | 100 | Plus |
2R | 25286936 | 2R | 10051802..10051886 | 502..586 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:09:30 has no hits.
BS05865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:45 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:04 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:58 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 10..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:40 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 10..586 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:40 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051020..10051339 | 10..333 | 98 | <- | Plus |
2R | 10051534..10051701 | 334..501 | 100 | <- | Plus |
2R | 10051802..10051886 | 502..586 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:58 Download gff for
BS05865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938525..5938844 | 10..333 | 98 | <- | Plus |
arm_2R | 5939039..5939206 | 334..501 | 100 | <- | Plus |
arm_2R | 5939307..5939391 | 502..586 | 100 | | Plus |
BS05865.5prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-03
> BS05865.5prime
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGTAGAAGCTTTCTAGACC
BS05865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12918-PA | 570 | CG12918-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..851 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051023..10051339 | 586..270 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 10051533..10051702 | 270..101 | 850 | 100 | Minus |
2R | 25286936 | 2R | 10051802..10051886 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:14:53 has no hits.
BS05865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:46 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:05 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:07 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:13 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 17..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:13 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051020..10051339 | 270..593 | 98 | <- | Minus |
2R | 10051534..10051701 | 102..269 | 100 | <- | Minus |
2R | 10051802..10051886 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:07 Download gff for
BS05865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938525..5938844 | 270..593 | 98 | <- | Minus |
arm_2R | 5939039..5939206 | 102..269 | 100 | <- | Minus |
arm_2R | 5939307..5939391 | 17..101 | 100 | | Minus |
BS05865.complete Sequence
602 bp (602 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635272
> BS05865.complete
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGTAGAAGCTTTCTAGACC
AT
BS05865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 570 | CG12918-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..851 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051023..10051339 | 586..270 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 10051533..10051702 | 270..101 | 850 | 100 | Minus |
2R | 25286936 | 2R | 10051802..10051886 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:42:42 has no hits.
BS05865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:33 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:56 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 247..819 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:09 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..851 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:33 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 247..819 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:27 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..851 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:27 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051023..10051339 | 270..586 | 100 | <- | Minus |
2R | 10051534..10051701 | 102..269 | 100 | <- | Minus |
2R | 10051802..10051886 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:09 Download gff for
BS05865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938528..5938844 | 270..586 | 100 | <- | Minus |
arm_2R | 5939039..5939206 | 102..269 | 100 | <- | Minus |
arm_2R | 5939307..5939391 | 17..101 | 100 | | Minus |
BS05865.pep Sequence
Translation from 16 to 585
> BS05865.pep
MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA
DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG
KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA
FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEEL*
BS05865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-PA | 189 | CG12918-PA | 1..189 | 1..189 | 971 | 100 | Plus |