Clone BS05865 Report

Search the DGRC for BS05865

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:58
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptsel-RA
Protein status:BS05865.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05865.3prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-03

> BS05865.3prime
ATGGTCTAGAAAGCTTCTACAGTTCCTCTTTGCCATCAAAGTCATACTCC
TCCTGGACCGGCGATTCGTCGCAGTAGCTCGCTTGTTCTGAGCAGATCTT
GATGTCTAAATCGTTTCCGAGCTCTTCGGCCTGGAAGGCTTTAACGAAGA
TCTCATCGTTGTCCTCCAGTACTTCGTTGCAGAAGTGCCCCAGGCTTTTG
TTGAGATCACCATCTTGCACAAAGTCAACCAACGAGGAGTCTGGGTTCAT
CTGACCATTGATGATCATCTTGAGGAGTGTGAATTTCCCGTTGCTCTTGT
AGGTTGCCTTCAAGTAGTCGTCCATTTTTTCGCAGATCTTCTCCATCAGT
TCGGTAAGGAACATTTCAGATTTCACTAGGCGAACTTTCTTGCTGATCGA
ATTTCCCTGTGCGTCCAGCCGGAATCCACTGACATCGGCCATCTTGTGGG
GGTCCTCCTTGGCAATGGCCTCCTCCAGTTCCGTAACCACGGCCTTGCAC
ACGTGACACTTGACCTCGCGGGAGGTGAAGCTGTAACCTTGGGCCAAGGC
CAGCAGGCCGAACAGGATAAGCGCCTTCGTCAGCATGTCGACTGATAACT

BS05865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12918-PA 570 CG12918-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..851 586..17 2850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051023..10051339 17..333 1585 100 Plus
2R 25286936 2R 10051533..10051702 333..502 850 100 Plus
2R 25286936 2R 10051802..10051886 502..586 425 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:09:30 has no hits.

BS05865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:45 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:04 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:58 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 10..586 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:40 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 10..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:40 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10051020..10051339 10..333 98 <- Plus
2R 10051534..10051701 334..501 100 <- Plus
2R 10051802..10051886 502..586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:58 Download gff for BS05865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938525..5938844 10..333 98 <- Plus
arm_2R 5939039..5939206 334..501 100 <- Plus
arm_2R 5939307..5939391 502..586 100   Plus

BS05865.5prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-03

> BS05865.5prime
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGTAGAAGCTTTCTAGACC

BS05865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12918-PA 570 CG12918-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..851 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051023..10051339 586..270 1585 100 Minus
2R 25286936 2R 10051533..10051702 270..101 850 100 Minus
2R 25286936 2R 10051802..10051886 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:14:53 has no hits.

BS05865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:46 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:05 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:36:07 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 17..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:13 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 17..593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:13 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10051020..10051339 270..593 98 <- Minus
2R 10051534..10051701 102..269 100 <- Minus
2R 10051802..10051886 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:36:07 Download gff for BS05865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938525..5938844 270..593 98 <- Minus
arm_2R 5939039..5939206 102..269 100 <- Minus
arm_2R 5939307..5939391 17..101 100   Minus

BS05865.complete Sequence

602 bp (602 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ635272

> BS05865.complete
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGTAGAAGCTTTCTAGACC
AT

BS05865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 570 CG12918-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..851 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051023..10051339 586..270 1585 100 Minus
2R 25286936 2R 10051533..10051702 270..101 850 100 Minus
2R 25286936 2R 10051802..10051886 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:42:42 has no hits.

BS05865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:21:33 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:02:56 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 247..819 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:09 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..851 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:21:33 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 247..819 17..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:27 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..851 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:27 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10051023..10051339 270..586 100 <- Minus
2R 10051534..10051701 102..269 100 <- Minus
2R 10051802..10051886 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:09 Download gff for BS05865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938528..5938844 270..586 100 <- Minus
arm_2R 5939039..5939206 102..269 100 <- Minus
arm_2R 5939307..5939391 17..101 100   Minus

BS05865.pep Sequence

Translation from 16 to 585

> BS05865.pep
MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA
DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG
KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA
FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEEL*

BS05865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
sel-PA 189 CG12918-PA 1..189 1..189 971 100 Plus