Clone Sequence Records
BS05866.3prime Sequence
903 bp (789 high quality bases) assembled on 2005-12-03
> BS05866.3prime
ATGGTCTAGAAAGCTTTCAGAAGCTCCTAAGGCAAAGATTGCAGTTGTTT
CCGCCTACTGCATTGTCGTGTCGGTGCAGCTCCAGGCTGAGGGGCTCCGT
GTCGTCCACCCAGGTCTCCAGGGTGCAGGAGCTGGACTGGTGGCTGGACT
TTTGCGACTGGGAGAGGGATCTGGTGGCCGCCGCCGCCTGCCGCCACCTG
GCTTCGAAGTCATCCCAGCGATCGCAGGCGTCGTCGTCCAGGGAGTTCCC
GTTGATGTCCCACTTAACAATGGGGAAGTCGTCGTGCGGTGGCTCCATGA
TCACCACGCTGTGGTAGTTGCCCTCCAGCTTGGAGCCCAGGCTGATACTG
CAGGGATGGTAGCGGCTGGGCGTGGGAATCCTTTGCTGCACTTGTTGTTT
CCTAGGAGTTGCCTGCTGCAGCACTTGCTGTTTCCGCGGAGTAGCCTGCT
GCTGCTGCTGCTGCTCTGGCTGCTCCTCCTTCTGTTCCTCCAGCTGCAGA
TCCAGACTGGAATTGGAGGGCGTGTGCCGCAGGTAGCGTACATTCGCCTT
GTATTTCACCCGCTCGAACTCGATGGTCGTTAGTGGTGTGTCCAACACCT
CGTAGTTGCCGCAGCTCATCATGTATTTGGTGCGCAGGTCATGCTTGGCC
GCTGGCTGCAGTTCCTCCACCTCCACCTCCTTGGAGGTGGCCAAGTCCAA
GGCCTGGTTGCACTCGCTCAGCTGCAGCTCTTCGTAGATGGCCTCCGTCA
CCGGACAGTTGCTGTTCACATCCAGCTCCAGATCTCGCTGCAGGTTGAGC
TCCTCCTCCAACTCCTCGTCGTCCCCGTCCTCCTCGTCCCAGCGCTGGAC
AAAGAGCTGCTTTGAAGTCGATATCTTGCGCAAGAACTTCAGACAGGACT
TCT
BS05866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PA | 912 | CG11191-RA | 90..912 | 839..17 | 4090 | 99.8 | Minus |
CG11191-PA | 912 | CG11191-RA | 26..86 | 903..843 | 280 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 182..1068 | 903..17 | 4360 | 99.5 | Minus |
CG11191-RA | 1300 | CG11191-RA | 182..1068 | 903..17 | 4360 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000881..8001752 | 17..888 | 4285 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:20:03 has no hits.
BS05866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:47 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 26..912 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:06 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 26..912 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:09:56 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 182..1068 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:16 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 182..1068 | 17..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:16 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000881..8001750 | 17..886 | 99 | <- | Plus |
2R | 8001923..8001939 | 887..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:09:56 Download gff for
BS05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888386..3889255 | 17..886 | 99 | <- | Plus |
arm_2R | 3889428..3889444 | 887..903 | 100 | | Plus |
BS05866.5prime Sequence
936 bp (789 high quality bases) assembled on 2005-12-03
> BS05866.5prime
GAAGTTATCAGTCGACATGTCGCACTTGCTGAGGCGCACCAAGAAGTCCT
GTCTGAAGTTCCTGCGCAAGATATCGACTTCAAAGCAGCTCTTTGTCCAG
CGGCTGGACGAGGAGGACGGGGACGACGAGGAGGTGGAGGAGGAGCTCAA
CCTGCAGCGAGATCTGGAGCTGGATGTGAACAGCAACTGTCCGGTGACGG
AGGCCATCTACGAAGAGCTGCAGCTGAGCGAGTGCAACCAGGCCTTGGAC
TTGGCCACCTCCAAGGAGGTGGAGGTGGAGGAACTGCAGCCAGCGGCCAA
GCATGACCTGCGCACCAAATACATGATGAGCTGCGGCAACTACGAGGTGT
TGGACACACCACTAACGACCATCGAGTTCGAGCGGGTGAAATACAAGGCG
AATGTACGCTACCTGCGGCACACGCCCTCCAATTCCAGTCTGGATCTGCA
GCTGGAGGAACAGAAGGAGGAGCAGCCAGAGCAGCAGCAGCAGCAGCAGG
CTACTCCGCGGAAACAGCAAGTGCTGCAGCAGGCAACTCCTAGGAAACAA
CAAGTGCAGCAAAGGATTCCCACGCCCAGCCGCTACCATCCCTGCAGTAT
CAGCCTGGGCTCCAAGCTGGAGGGCAACTACCACAGCGTGGTGATCATGG
AGCCACCGCACGACGACTTCCCCATTGTTAAGTGGGACATCAACGGGAAC
TCCCTGGACGACGACGCCTGCGATCGCTGGGATGACTTCGAAGCCAGGTG
GCGGCAGGCGGCGGCGGCCACCAGATCCCTCTCCCAGTCGCAAAAGTCCA
GCCACCAGTCCAGCTCCTGCACCCTGGAGACCTGGGTGGACGACACGGAG
CCCCTCAGCCTGGAGCTGCACCGACACGACAATGCAGTAGGCGGAAAACA
CTGCATCTTTGCTTANGAGCTTCTGAAAGCTTCTAG
BS05866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PA | 912 | CG11191-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 156..1068 | 16..926 | 4474 | 99.5 | Plus |
CG11191-RA | 1300 | CG11191-RA | 156..1068 | 16..926 | 4474 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000904..8001752 | 905..57 | 4215 | 99.8 | Minus |
2R | 25286936 | 2R | 8001923..8001965 | 58..16 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:14:27 has no hits.
BS05866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:24:48 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:58:08 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:45 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1068 | 2..926 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:52 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1068 | 2..926 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:52 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000881..8001750 | 59..926 | 99 | <- | Minus |
2R | 8001923..8001978 | 2..58 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:45 Download gff for
BS05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888386..3889255 | 59..926 | 99 | <- | Minus |
arm_2R | 3889428..3889483 | 2..58 | 91 | | Minus |
BS05866.complete Sequence
944 bp (944 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ635273
> BS05866.complete
GAAGTTATCAGTCGACATGTCGCACTTGCTGAGGCGCACCAAGAAGTCCT
GTCTGAAGTTCCTGCGCAAGATATCGACTTCAAAGCAGCTCTTTGTCCAG
CGGCTGGACGAGGAGGACGGGGACGACGAGGAGGTGGAGGAGGAGCTCAA
CCTGCAGCGAGATCTGGAGCTGGATGTGAACAGCAACTGTCCGGTGACGG
AGGCCATCTACGAAGAGCTGCAGCTGAGCGAGTGCAACCAGGCCTTGGAC
TTGGCCACCTCCAAGGAGGTGGAGGTGGAGGAACTGCAGCCAGCGGCCAA
GCATGACCTGCGCACCAAATACATGATGAGCTGCGGCAACTACGAGGTGT
TGGACACACCACTAACGACCATCGAGTTCGAGCGGGTGAAATACAAGGCG
AATGTACGCTACCTGCGGCACACGCCCTCCAATTCCAGTCTGGATCTGCA
GCTGGAGGAACAGAAGGAGGAGCAGCCAGAGCAGCAGCAGCAGCAGCAGG
CTACTCCGCGGAAACAGCAAGTGCTGCAGCAGGCAACTCCTAGGAAACAA
CAAGTGCAGCAAAGGATTCCCACGCCCAGCCGCTACCATCCCTGCAGTAT
CAGCCTGGGCTCCAAGCTGGAGGGCAACTACCACAGCGTGGTGATCATGG
AGCCACCGCACGACGACTTCCCCATTGTTAAGTGGGACATCAACGGGAAC
TCCCTGGACGACGACGCCTGCGATCGCTGGGATGACTTCGAAGCCAGGTG
GCGGCAGGCGGCGGCGGCCACCAGATCCCTCTCCCAGTCGCAAAAGTCCA
GCCACCAGTCCAGCTCCTGCACCCTGGAGACCTGGGTGGACGACACGGAG
CCCCTCAGCCTGGAGCTGCACCGACACGACAATGCAGTAGGCGGAAACAA
CTGCAATCTTTGCCTTAGGAGCTTCTGAAAGCTTTCTAGACCAT
BS05866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 912 | CG11191-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG11191-RA | 912 | CG11191-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 156..1068 | 16..928 | 4565 | 100 | Plus |
CG11191-RA | 1300 | CG11191-RA | 156..1068 | 16..928 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000881..8001752 | 928..57 | 4360 | 100 | Minus |
2R | 25286936 | 2R | 8001923..8001965 | 58..16 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:59 has no hits.
BS05866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:22 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:33 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1068 | 2..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:56 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 157..1067 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:22 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1068 | 2..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:01 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 157..1067 | 17..927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:01 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000882..8001750 | 59..927 | 100 | <- | Minus |
2R | 8001923..8001964 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:56 Download gff for
BS05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888387..3889255 | 59..927 | 100 | <- | Minus |
arm_2R | 3889428..3889469 | 17..58 | 100 | | Minus |
BS05866.pep Sequence
Translation from 16 to 927
> BS05866.pep
MSHLLRRTKKSCLKFLRKISTSKQLFVQRLDEEDGDDEEVEEELNLQRDL
ELDVNSNCPVTEAIYEELQLSECNQALDLATSKEVEVEELQPAAKHDLRT
KYMMSCGNYEVLDTPLTTIEFERVKYKANVRYLRHTPSNSSLDLQLEEQK
EEQPEQQQQQQATPRKQQVLQQATPRKQQVQQRIPTPSRYHPCSISLGSK
LEGNYHSVVIMEPPHDDFPIVKWDINGNSLDDDACDRWDDFEARWRQAAA
ATRSLSQSQKSSHQSSSCTLETWVDDTEPLSLELHRHDNAVGGNNCNLCL
RSF*
BS05866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PB | 303 | CG11191-PB | 1..303 | 1..303 | 1594 | 100 | Plus |
CG11191-PA | 303 | CG11191-PA | 1..303 | 1..303 | 1594 | 100 | Plus |